Wall clock time and date at job start Wed Apr 1 2020 04:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00021 * 2 1 4 4 H 1.48499 * 109.47307 * 240.00130 * 3 2 1 5 5 H 1.48495 * 109.47304 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46900 * 120.00350 * 3 2 1 7 7 C 1.38816 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99896 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.64805 * 13.22976 * 9 7 2 11 11 C 1.54917 * 104.83001 * 155.91694 * 10 9 7 12 12 C 1.55160 * 101.57927 * 37.01232 * 11 10 9 13 13 C 1.47026 * 125.64703 * 193.28459 * 9 7 2 14 14 H 1.08994 * 110.01054 * 300.50288 * 13 9 7 15 15 C 1.52995 * 109.87929 * 61.59504 * 13 9 7 16 16 N 1.46502 * 109.46690 * 179.56179 * 15 13 9 17 17 C 1.34783 * 120.00133 * 185.11414 * 16 15 13 18 18 O 1.21284 * 119.99624 * 0.02562 * 17 16 15 19 19 C 1.50696 * 120.00334 * 180.02562 * 17 16 15 20 20 H 1.08999 * 109.50541 * 30.82381 * 19 17 16 21 21 C 1.53099 * 109.50836 * 270.73719 * 19 17 16 22 22 O 1.43103 * 109.20766 * 183.21106 * 21 19 17 23 23 C 1.43018 * 113.76120 * 58.64592 * 22 21 19 24 24 C 1.53094 * 109.25794 * 301.32543 * 23 22 21 25 25 N 1.47009 * 109.50840 * 150.91083 * 19 17 16 26 26 C 1.46902 * 111.00067 * 302.37238 * 25 19 17 27 27 C 1.52997 * 109.47225 * 163.04826 * 26 25 19 28 28 F 1.39902 * 109.47015 * 304.02677 * 27 26 25 29 29 F 1.39899 * 109.47155 * 64.03204 * 27 26 25 30 30 H 0.96998 * 119.99667 * 359.97438 * 1 2 3 31 31 H 1.09005 * 110.36610 * 37.08147 * 10 9 7 32 32 H 1.08996 * 110.46294 * 274.80155 * 10 9 7 33 33 H 1.08994 * 111.00491 * 278.93333 * 11 10 9 34 34 H 1.09002 * 111.03449 * 155.09772 * 11 10 9 35 35 H 1.09001 * 110.71310 * 206.13229 * 12 11 10 36 36 H 1.08996 * 110.72044 * 82.86178 * 12 11 10 37 37 H 1.09003 * 109.47213 * 59.57273 * 15 13 9 38 38 H 1.08999 * 109.47626 * 299.56470 * 15 13 9 39 39 H 0.96999 * 120.00078 * 5.12389 * 16 15 13 40 40 H 1.08991 * 109.50971 * 303.10825 * 21 19 17 41 41 H 1.09000 * 109.50552 * 63.23888 * 21 19 17 42 42 H 1.09002 * 109.50725 * 181.39211 * 23 22 21 43 43 H 1.09001 * 109.54207 * 61.28281 * 23 22 21 44 44 H 1.08999 * 109.50546 * 296.91330 * 24 23 22 45 45 H 1.09000 * 109.50742 * 176.77938 * 24 23 22 46 46 H 1.08998 * 109.47046 * 283.05255 * 26 25 19 47 47 H 1.09006 * 109.46669 * 43.04675 * 26 25 19 48 48 H 1.09001 * 109.46878 * 184.03125 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1141 -2.5490 -0.2742 11 6 -0.2641 -4.0121 -0.7607 12 6 0.7672 -4.7460 0.1366 13 6 1.9042 -3.7116 0.2735 14 1 2.6929 -3.9302 -0.4464 15 6 2.4719 -3.7473 1.6938 16 7 3.0365 -5.0725 1.9608 17 6 3.5032 -5.3712 3.1894 18 8 3.4554 -4.5429 4.0741 19 6 4.0845 -6.7341 3.4640 20 1 4.5453 -7.1229 2.5559 21 6 2.9719 -7.6823 3.9189 22 8 3.5418 -8.9526 4.2495 23 6 4.5328 -8.8893 5.2787 24 6 5.6605 -7.9529 4.8369 25 7 5.0983 -6.6311 4.5235 26 6 6.1571 -5.6842 4.1489 27 6 6.9448 -5.2800 5.3967 28 9 6.0674 -4.7588 6.3536 29 9 7.5945 -6.4022 5.9218 30 1 -0.4849 0.8401 0.0004 31 1 -0.4320 -1.8557 -1.0530 32 1 -0.6948 -2.3899 0.6344 33 1 0.0002 -4.1025 -1.8142 34 1 -1.2731 -4.3830 -0.5800 35 1 1.1268 -5.6521 -0.3511 36 1 0.3359 -4.9763 1.1108 37 1 1.6754 -3.5410 2.4087 38 1 3.2528 -2.9931 1.7921 39 1 3.0746 -5.7350 1.2533 40 1 2.4756 -7.2668 4.7959 41 1 2.2472 -7.8057 3.1142 42 1 4.9364 -9.8860 5.4573 43 1 4.0824 -8.5093 6.1957 44 1 6.1465 -8.3612 3.9508 45 1 6.3899 -7.8567 5.6412 46 1 6.8291 -6.1556 3.4318 47 1 5.7093 -4.7980 3.6990 48 1 7.6834 -4.5238 5.1309 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028050191.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:47 Heat of formation + Delta-G solvation = -141.567998 kcal Electronic energy + Delta-G solvation = -32337.044345 eV Core-core repulsion = 27677.829186 eV Total energy + Delta-G solvation = -4659.215159 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.06891 -47.00879 -40.60848 -38.81615 -37.62657 -36.05805 -34.30634 -32.54546 -31.85613 -30.67100 -29.68486 -28.67283 -26.56468 -25.40708 -24.68700 -23.64495 -22.64032 -21.35181 -20.40546 -20.04707 -19.48629 -18.05825 -17.58699 -17.20807 -16.97707 -16.60991 -16.46377 -16.25516 -15.77912 -15.30101 -14.98553 -14.80103 -14.49139 -14.41810 -14.18455 -13.99561 -13.90806 -13.64337 -13.37004 -13.23206 -12.89053 -12.58677 -12.47191 -12.11964 -12.02053 -11.92631 -11.79948 -11.73763 -11.40648 -11.31155 -10.99348 -10.81102 -10.75080 -10.29961 -10.17611 -10.08700 -9.97072 -9.88242 -9.75228 -9.53483 -8.80570 -8.74737 -8.62698 -6.90011 -5.80130 -3.17219 2.61185 2.97465 3.31080 3.37803 3.42790 3.43173 3.62227 3.70184 4.03697 4.27626 4.44168 4.54005 4.61556 4.64991 4.71801 4.75830 4.94105 4.97964 5.15180 5.27533 5.28636 5.34536 5.36778 5.40961 5.45644 5.52154 5.57272 5.62289 5.75724 5.98428 6.07208 6.18544 6.32340 6.40478 6.46697 6.49843 6.54165 6.63462 6.74385 6.77033 6.99265 7.48100 7.55669 7.66813 7.75290 8.21314 8.36200 9.13062 9.73769 10.40333 11.31244 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.013052 B = 0.002939 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.772461 B = 9526.235463 C =11252.526132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.000 4.000 3 Si 0.911 3.089 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.236 4.236 8 H 0.075 0.925 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.149 4.149 12 C -0.127 4.127 13 C 0.152 3.848 14 H 0.037 0.963 15 C 0.110 3.890 16 N -0.722 5.722 17 C 0.507 3.493 18 O -0.512 6.512 19 C 0.033 3.967 20 H 0.070 0.930 21 C 0.078 3.922 22 O -0.380 6.380 23 C 0.062 3.938 24 C 0.001 3.999 25 N -0.508 5.508 26 C -0.001 4.001 27 C 0.274 3.726 28 F -0.187 7.187 29 F -0.209 7.209 30 H 0.255 0.745 31 H 0.075 0.925 32 H 0.025 0.975 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.395 0.605 40 H 0.070 0.930 41 H 0.106 0.894 42 H 0.101 0.899 43 H 0.064 0.936 44 H 0.046 0.954 45 H 0.110 0.890 46 H 0.066 0.934 47 H 0.111 0.889 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.011 -18.411 5.991 22.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.198 4.198 3 Si 0.741 3.259 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.364 4.364 8 H 0.093 0.907 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.165 4.165 13 C 0.044 3.956 14 H 0.054 0.946 15 C -0.015 4.015 16 N -0.374 5.374 17 C 0.290 3.710 18 O -0.386 6.386 19 C -0.079 4.079 20 H 0.088 0.912 21 C 0.000 4.000 22 O -0.298 6.298 23 C -0.015 4.015 24 C -0.126 4.126 25 N -0.234 5.234 26 C -0.130 4.130 27 C 0.219 3.781 28 F -0.168 7.168 29 F -0.190 7.190 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.043 0.957 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.228 0.772 40 H 0.089 0.911 41 H 0.124 0.876 42 H 0.119 0.881 43 H 0.082 0.918 44 H 0.064 0.936 45 H 0.128 0.872 46 H 0.084 0.916 47 H 0.130 0.870 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 10.588 -17.518 6.987 21.628 hybrid contribution 1.014 0.561 -0.795 1.405 sum 11.602 -16.956 6.192 21.458 Atomic orbital electron populations 1.69922 1.05022 1.25476 1.55699 1.24896 0.95681 0.97868 1.01326 0.86223 0.78610 0.83070 0.78002 1.21070 1.21508 1.20946 1.18927 0.90339 0.82209 1.44975 0.90716 1.44482 1.05582 1.00655 1.80551 1.21484 0.84563 0.90359 0.98936 1.23008 0.97464 0.99571 0.98686 1.22605 0.97073 0.96952 0.99832 1.21120 0.94384 0.88113 0.92020 0.94573 1.22276 0.98236 0.81452 0.99531 1.46234 1.62398 1.17328 1.11443 1.20114 0.79346 0.88518 0.83030 1.90780 1.54503 1.49158 1.44197 1.22362 0.95492 0.95400 0.94644 0.91243 1.22555 0.93048 0.82650 1.01700 1.88021 1.56058 1.28746 1.56944 1.22716 0.88241 0.99651 0.90880 1.23309 0.98506 0.88307 1.02488 1.61867 1.12339 1.08895 1.40270 1.23336 0.94464 0.99537 0.95646 1.21857 0.87392 0.83824 0.84980 1.93048 1.71014 1.86457 1.66308 1.92855 1.82267 1.55165 1.88723 0.93494 0.90676 0.95704 0.92304 0.92309 0.92400 0.91778 0.91360 0.91668 0.77150 0.91124 0.87553 0.88066 0.91817 0.93609 0.87181 0.91582 0.87042 0.86938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.27 10.52 55.49 0.58 -25.68 16 2 C 0.00 -0.01 5.47 -17.43 -0.10 -0.10 16 3 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.24 -6.32 9.82 -15.06 -0.15 -6.47 16 8 H 0.08 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.59 -14.19 3.13 -162.57 -0.51 -14.69 16 10 C 0.17 3.99 5.43 -2.52 -0.01 3.97 16 11 C -0.15 -2.63 7.09 -24.58 -0.17 -2.80 16 12 C -0.13 -1.99 5.95 -24.89 -0.15 -2.14 16 13 C 0.15 2.85 3.26 -66.95 -0.22 2.63 16 14 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 15 C 0.11 2.00 5.05 -4.04 -0.02 1.97 16 16 N -0.72 -9.79 5.29 -60.29 -0.32 -10.11 16 17 C 0.51 7.27 5.68 -10.98 -0.06 7.21 16 18 O -0.51 -9.69 15.68 5.55 0.09 -9.60 16 19 C 0.03 0.37 2.37 -68.76 -0.16 0.21 16 20 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 21 C 0.08 0.83 6.28 37.21 0.23 1.07 16 22 O -0.38 -4.06 10.83 -35.23 -0.38 -4.44 16 23 C 0.06 0.56 7.01 37.21 0.26 0.82 16 24 C 0.00 0.01 5.33 -3.71 -0.02 -0.01 16 25 N -0.51 -5.84 4.08 -227.73 -0.93 -6.77 16 26 C 0.00 -0.01 5.03 -3.82 -0.02 -0.03 16 27 C 0.27 2.74 5.57 37.16 0.21 2.94 16 28 F -0.19 -2.62 17.19 2.25 0.04 -2.58 16 29 F -0.21 -2.09 14.44 2.25 0.03 -2.06 16 30 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.08 1.96 6.83 -51.93 -0.35 1.60 16 32 H 0.02 0.63 8.09 -51.93 -0.42 0.21 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 1.00 7.84 -51.93 -0.41 0.59 16 37 H 0.07 1.43 8.13 -51.93 -0.42 1.01 16 38 H 0.06 1.34 8.00 -51.93 -0.42 0.92 16 39 H 0.40 4.16 8.24 -40.82 -0.34 3.82 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.11 1.01 5.37 -51.93 -0.28 0.73 16 46 H 0.07 0.53 8.03 -51.93 -0.42 0.11 16 47 H 0.11 1.37 5.99 -51.93 -0.31 1.06 16 48 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 383.59 15.07 5.78 5.78 Total: -1.00 -32.80 383.59 -8.58 -41.38 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -7.56 Total: 2.78 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: -0.38 Total: 9.28 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: -1.17 Total: -57.26 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.29 Total: -14.05 kcal Atomic # 9 Polarization: -4.71 SS G_CDS: 0.07 Total: -4.64 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.80 -8.58 -41.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028050191.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.189 kcal (2) G-P(sol) polarization free energy of solvation -32.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds