Wall clock time and date at job start Wed Apr 1 2020 04:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00021 * 2 1 4 4 H 1.48499 * 109.47307 * 240.00130 * 3 2 1 5 5 H 1.48495 * 109.47304 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46900 * 120.00350 * 3 2 1 7 7 C 1.38816 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99896 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.64805 * 13.22976 * 9 7 2 11 11 C 1.54917 * 104.83001 * 155.91694 * 10 9 7 12 12 C 1.55160 * 101.57927 * 37.01232 * 11 10 9 13 13 C 1.47026 * 125.64703 * 193.28459 * 9 7 2 14 14 H 1.08994 * 110.01054 * 300.50288 * 13 9 7 15 15 C 1.52995 * 109.87929 * 61.59504 * 13 9 7 16 16 N 1.46502 * 109.46690 * 179.56179 * 15 13 9 17 17 C 1.34783 * 120.00133 * 185.11414 * 16 15 13 18 18 O 1.21284 * 119.99624 * 0.02562 * 17 16 15 19 19 C 1.50696 * 120.00334 * 180.02562 * 17 16 15 20 20 H 1.08999 * 109.50541 * 30.82381 * 19 17 16 21 21 C 1.53099 * 109.50836 * 270.73719 * 19 17 16 22 22 O 1.43103 * 109.20766 * 183.21106 * 21 19 17 23 23 C 1.43018 * 113.76120 * 58.64592 * 22 21 19 24 24 C 1.53094 * 109.25794 * 301.32543 * 23 22 21 25 25 N 1.47009 * 109.50840 * 150.91083 * 19 17 16 26 26 C 1.46902 * 111.00067 * 302.37238 * 25 19 17 27 27 C 1.52997 * 109.47225 * 163.04826 * 26 25 19 28 28 F 1.39902 * 109.47015 * 304.02677 * 27 26 25 29 29 F 1.39899 * 109.47155 * 64.03204 * 27 26 25 30 30 H 0.96998 * 119.99667 * 359.97438 * 1 2 3 31 31 H 1.09005 * 110.36610 * 37.08147 * 10 9 7 32 32 H 1.08996 * 110.46294 * 274.80155 * 10 9 7 33 33 H 1.08994 * 111.00491 * 278.93333 * 11 10 9 34 34 H 1.09002 * 111.03449 * 155.09772 * 11 10 9 35 35 H 1.09001 * 110.71310 * 206.13229 * 12 11 10 36 36 H 1.08996 * 110.72044 * 82.86178 * 12 11 10 37 37 H 1.09003 * 109.47213 * 59.57273 * 15 13 9 38 38 H 1.08999 * 109.47626 * 299.56470 * 15 13 9 39 39 H 0.96999 * 120.00078 * 5.12389 * 16 15 13 40 40 H 1.08991 * 109.50971 * 303.10825 * 21 19 17 41 41 H 1.09000 * 109.50552 * 63.23888 * 21 19 17 42 42 H 1.09002 * 109.50725 * 181.39211 * 23 22 21 43 43 H 1.09001 * 109.54207 * 61.28281 * 23 22 21 44 44 H 1.08999 * 109.50546 * 296.91330 * 24 23 22 45 45 H 1.09000 * 109.50742 * 176.77938 * 24 23 22 46 46 H 1.08998 * 109.47046 * 283.05255 * 26 25 19 47 47 H 1.09006 * 109.46669 * 43.04675 * 26 25 19 48 48 H 1.09001 * 109.46878 * 184.03125 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1141 -2.5490 -0.2742 11 6 -0.2641 -4.0121 -0.7607 12 6 0.7672 -4.7460 0.1366 13 6 1.9042 -3.7116 0.2735 14 1 2.6929 -3.9302 -0.4464 15 6 2.4719 -3.7473 1.6938 16 7 3.0365 -5.0725 1.9608 17 6 3.5032 -5.3712 3.1894 18 8 3.4554 -4.5429 4.0741 19 6 4.0845 -6.7341 3.4640 20 1 4.5453 -7.1229 2.5559 21 6 2.9719 -7.6823 3.9189 22 8 3.5418 -8.9526 4.2495 23 6 4.5328 -8.8893 5.2787 24 6 5.6605 -7.9529 4.8369 25 7 5.0983 -6.6311 4.5235 26 6 6.1571 -5.6842 4.1489 27 6 6.9448 -5.2800 5.3967 28 9 6.0674 -4.7588 6.3536 29 9 7.5945 -6.4022 5.9218 30 1 -0.4849 0.8401 0.0004 31 1 -0.4320 -1.8557 -1.0530 32 1 -0.6948 -2.3899 0.6344 33 1 0.0002 -4.1025 -1.8142 34 1 -1.2731 -4.3830 -0.5800 35 1 1.1268 -5.6521 -0.3511 36 1 0.3359 -4.9763 1.1108 37 1 1.6754 -3.5410 2.4087 38 1 3.2528 -2.9931 1.7921 39 1 3.0746 -5.7350 1.2533 40 1 2.4756 -7.2668 4.7959 41 1 2.2472 -7.8057 3.1142 42 1 4.9364 -9.8860 5.4573 43 1 4.0824 -8.5093 6.1957 44 1 6.1465 -8.3612 3.9508 45 1 6.3899 -7.8567 5.6412 46 1 6.8291 -6.1556 3.4318 47 1 5.7093 -4.7980 3.6990 48 1 7.6834 -4.5238 5.1309 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028050191.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:46 Heat of formation + Delta-G solvation = -166.256109 kcal Electronic energy + Delta-G solvation = -32338.114901 eV Core-core repulsion = 27677.829186 eV Total energy + Delta-G solvation = -4660.285716 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.90109 -47.89135 -41.61209 -39.95843 -39.10869 -36.90393 -35.73714 -34.40547 -32.78772 -31.47389 -31.35369 -30.22140 -27.41918 -26.78504 -26.19635 -24.99878 -23.42621 -22.37059 -21.94252 -21.31549 -20.90969 -19.12266 -18.63650 -18.39955 -17.98502 -17.79755 -17.48063 -17.19276 -16.89991 -16.60713 -16.24215 -15.95736 -15.78724 -15.64464 -15.45357 -15.10635 -14.88323 -14.79095 -14.60321 -14.24234 -13.98509 -13.85287 -13.64241 -13.53029 -13.35295 -13.30296 -12.94276 -12.87621 -12.78441 -12.64699 -12.52047 -12.16514 -12.06848 -11.85791 -11.71238 -11.51737 -11.46953 -11.38889 -11.01477 -10.68604 -10.63233 -10.09375 -9.56188 -8.87247 -7.88021 -5.25609 1.43952 1.47270 1.48284 1.52768 1.92538 2.43302 2.49574 2.84790 2.92016 3.30793 3.31421 3.50659 3.61413 3.70965 3.81610 3.86948 3.91935 3.97379 3.99347 4.02010 4.22544 4.23230 4.28161 4.38962 4.46064 4.49763 4.55071 4.62815 4.65438 4.73939 4.82304 4.90233 4.97313 5.00952 5.15417 5.21050 5.36204 5.47512 5.52771 5.57621 5.67282 5.74117 5.78928 6.00150 6.23008 6.56692 7.08694 7.23945 7.76597 8.41790 9.22207 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.013052 B = 0.002939 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.772461 B = 9526.235463 C =11252.526132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.060 4.060 3 Si 0.971 3.029 4 H -0.273 1.273 5 H -0.295 1.295 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.078 0.922 9 N -0.611 5.611 10 C 0.172 3.828 11 C -0.134 4.134 12 C -0.113 4.113 13 C 0.148 3.852 14 H 0.054 0.946 15 C 0.132 3.868 16 N -0.703 5.703 17 C 0.511 3.489 18 O -0.563 6.563 19 C 0.045 3.955 20 H 0.099 0.901 21 C 0.080 3.920 22 O -0.383 6.383 23 C 0.058 3.942 24 C 0.006 3.994 25 N -0.535 5.535 26 C 0.000 4.000 27 C 0.267 3.733 28 F -0.215 7.215 29 F -0.208 7.208 30 H 0.247 0.753 31 H 0.037 0.963 32 H -0.011 1.011 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.108 0.892 36 H 0.065 0.935 37 H 0.033 0.967 38 H 0.034 0.966 39 H 0.416 0.584 40 H 0.048 0.952 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.051 0.949 44 H 0.062 0.938 45 H 0.110 0.890 46 H 0.096 0.904 47 H 0.088 0.912 48 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.856 -21.506 4.884 25.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.254 4.254 3 Si 0.799 3.201 4 H -0.198 1.198 5 H -0.221 1.221 6 H -0.209 1.209 7 C -0.369 4.369 8 H 0.096 0.904 9 N -0.336 5.336 10 C 0.047 3.953 11 C -0.172 4.172 12 C -0.151 4.151 13 C 0.041 3.959 14 H 0.071 0.929 15 C 0.006 3.994 16 N -0.357 5.357 17 C 0.296 3.704 18 O -0.440 6.440 19 C -0.067 4.067 20 H 0.117 0.883 21 C 0.002 3.998 22 O -0.301 6.301 23 C -0.019 4.019 24 C -0.120 4.120 25 N -0.261 5.261 26 C -0.129 4.129 27 C 0.213 3.787 28 F -0.197 7.197 29 F -0.189 7.189 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.007 0.993 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.126 0.874 36 H 0.084 0.916 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.253 0.747 40 H 0.066 0.934 41 H 0.146 0.854 42 H 0.146 0.854 43 H 0.070 0.930 44 H 0.080 0.920 45 H 0.128 0.872 46 H 0.114 0.886 47 H 0.107 0.893 48 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 12.468 -20.689 5.856 24.855 hybrid contribution 0.494 1.462 -0.406 1.595 sum 12.962 -19.227 5.450 23.820 Atomic orbital electron populations 1.70137 1.06308 1.25399 1.57596 1.25665 0.96485 1.00999 1.02254 0.85270 0.77335 0.79271 0.78197 1.19820 1.22111 1.20859 1.19279 0.90791 0.83616 1.43224 0.90374 1.44752 1.06008 1.01925 1.80892 1.21287 0.84006 0.93690 0.96303 1.22870 0.99596 0.95271 0.99508 1.22608 0.94966 0.97418 1.00069 1.21346 0.95959 0.86561 0.92050 0.92868 1.21659 0.96234 0.83097 0.98418 1.45892 1.61679 1.15948 1.12180 1.20709 0.78144 0.89361 0.82158 1.90767 1.56363 1.51093 1.45799 1.22283 0.95719 0.92773 0.95936 0.88318 1.22569 0.93090 0.82599 1.01549 1.88023 1.56427 1.28395 1.57277 1.22884 0.87880 1.01079 0.90010 1.23312 0.98460 0.87180 1.03091 1.61839 1.13134 1.10263 1.40904 1.23329 0.94620 0.98692 0.96235 1.22277 0.87743 0.84591 0.84073 1.92990 1.72212 1.86937 1.67536 1.92850 1.82083 1.55266 1.88716 0.94370 0.94421 0.99334 0.91124 0.90044 0.87413 0.91594 0.94813 0.94707 0.74655 0.93360 0.85433 0.85390 0.93045 0.92027 0.87223 0.88645 0.89345 0.83467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.84 10.52 21.65 0.23 -56.61 16 2 C -0.06 -3.42 5.47 84.86 0.46 -2.96 16 3 Si 0.97 45.90 29.55 68.60 2.03 47.92 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 6 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 7 C -0.24 -13.13 9.82 84.03 0.83 -12.30 16 8 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 9 N -0.61 -29.89 3.13 -668.25 -2.09 -31.98 16 10 C 0.17 8.23 5.43 86.86 0.47 8.70 16 11 C -0.13 -4.45 7.09 31.99 0.23 -4.22 16 12 C -0.11 -3.16 5.95 31.78 0.19 -2.97 16 13 C 0.15 5.33 3.26 45.34 0.15 5.47 16 14 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 15 C 0.13 4.80 5.05 86.38 0.44 5.24 16 16 N -0.70 -17.75 5.29 -463.05 -2.45 -20.20 16 17 C 0.51 14.14 5.68 87.65 0.50 14.64 16 18 O -0.56 -21.79 15.68 -3.04 -0.05 -21.84 16 19 C 0.04 0.89 2.37 44.18 0.10 1.00 16 20 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 21 C 0.08 1.52 6.28 72.02 0.45 1.97 16 22 O -0.38 -7.12 10.83 -148.98 -1.61 -8.73 16 23 C 0.06 0.91 7.01 72.01 0.50 1.41 16 24 C 0.01 0.10 5.33 86.31 0.46 0.56 16 25 N -0.53 -11.38 4.08 -874.42 -3.57 -14.95 16 26 C 0.00 0.00 5.03 86.30 0.43 0.43 16 27 C 0.27 4.99 5.57 71.98 0.40 5.39 16 28 F -0.22 -6.08 17.19 44.97 0.77 -5.31 16 29 F -0.21 -3.79 14.44 44.97 0.65 -3.14 16 30 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 31 H 0.04 2.05 6.83 -2.38 -0.02 2.03 16 32 H -0.01 -0.61 8.09 -2.39 -0.02 -0.63 16 33 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.07 1.86 7.84 -2.39 -0.02 1.84 16 37 H 0.03 1.46 8.13 -2.39 -0.02 1.44 16 38 H 0.03 1.47 8.00 -2.39 -0.02 1.45 16 39 H 0.42 7.10 8.24 -92.71 -0.76 6.33 16 40 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.11 1.77 5.37 -2.39 -0.01 1.76 16 46 H 0.10 1.21 8.03 -2.39 -0.02 1.19 16 47 H 0.09 2.12 5.99 -2.38 -0.01 2.10 16 48 H 0.15 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -76.91 383.59 -0.27 -77.17 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: 0.21 Total: 15.30 kcal Atomic # 6 Polarization: 16.76 SS G_CDS: 5.62 Total: 22.37 kcal Atomic # 7 Polarization: -115.87 SS G_CDS: -7.88 Total: -123.75 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -1.66 Total: -30.57 kcal Atomic # 9 Polarization: -9.87 SS G_CDS: 1.42 Total: -8.45 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.92 kcal Total: -76.91 -0.27 -77.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028050191.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.082 kcal (2) G-P(sol) polarization free energy of solvation -76.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds