Wall clock time and date at job start Wed Apr 1 2020 04:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99540 * 2 1 4 4 H 1.48502 * 109.47119 * 239.99905 * 3 2 1 5 5 H 1.48500 * 109.47283 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47394 * 120.00246 * 3 2 1 7 7 C 1.38803 * 120.00582 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00766 * 180.02562 * 7 2 1 9 9 N 1.36946 * 119.99953 * 359.97438 * 7 2 1 10 10 C 1.47746 * 125.81726 * 348.11228 * 9 7 2 11 11 C 1.54916 * 104.83723 * 204.24419 * 10 9 7 12 12 C 1.55155 * 101.58018 * 322.90877 * 11 10 9 13 13 C 1.47013 * 125.64928 * 168.10749 * 9 7 2 14 14 H 1.08999 * 109.88436 * 59.32776 * 13 9 7 15 15 C 1.53001 * 109.88417 * 298.31342 * 13 9 7 16 16 N 1.46502 * 109.47245 * 178.22313 * 15 13 9 17 17 C 1.34777 * 120.00056 * 183.53883 * 16 15 13 18 18 O 1.21276 * 119.99786 * 0.02562 * 17 16 15 19 19 C 1.50697 * 120.00065 * 180.02562 * 17 16 15 20 20 H 1.09005 * 109.50637 * 32.70831 * 19 17 16 21 21 C 1.53096 * 109.50741 * 272.61917 * 19 17 16 22 22 O 1.43015 * 109.25928 * 183.21602 * 21 19 17 23 23 C 1.43013 * 113.74006 * 58.67287 * 22 21 19 24 24 C 1.53097 * 109.25589 * 301.32893 * 23 22 21 25 25 N 1.47016 * 109.29400 * 56.82656 * 24 23 22 26 26 C 1.46900 * 110.99775 * 177.62890 * 25 24 23 27 27 C 1.52996 * 109.47377 * 74.14817 * 26 25 24 28 28 F 1.39906 * 109.46954 * 305.76193 * 27 26 25 29 29 F 1.39903 * 109.47459 * 65.75654 * 27 26 25 30 30 H 0.97003 * 120.00367 * 0.02562 * 1 2 3 31 31 H 1.08997 * 110.43703 * 85.37246 * 10 9 7 32 32 H 1.08997 * 110.29339 * 323.04929 * 10 9 7 33 33 H 1.08997 * 111.00642 * 204.82743 * 11 10 9 34 34 H 1.09000 * 111.03482 * 80.99487 * 11 10 9 35 35 H 1.09002 * 110.71370 * 277.13308 * 12 11 10 36 36 H 1.09005 * 110.86759 * 153.93599 * 12 11 10 37 37 H 1.09005 * 109.46702 * 58.22661 * 15 13 9 38 38 H 1.08992 * 109.47421 * 298.22937 * 15 13 9 39 39 H 0.97003 * 119.99784 * 3.54277 * 16 15 13 40 40 H 1.09006 * 109.50808 * 63.27970 * 21 19 17 41 41 H 1.08999 * 109.50750 * 303.15215 * 21 19 17 42 42 H 1.08992 * 109.50536 * 181.39323 * 23 22 21 43 43 H 1.09000 * 109.54307 * 61.28126 * 23 22 21 44 44 H 1.09001 * 109.50543 * 176.78132 * 24 23 22 45 45 H 1.08994 * 109.50684 * 296.86983 * 24 23 22 46 46 H 1.09008 * 109.47106 * 194.14581 * 26 25 24 47 47 H 1.08998 * 109.47447 * 314.14028 * 26 25 24 48 48 H 1.09001 * 109.47476 * 185.76246 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1039 1.6966 1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1218 -2.5508 0.2468 11 6 -0.2769 -4.0078 0.7499 12 6 0.7732 -4.7504 -0.1179 13 6 1.9097 -3.7145 -0.2472 14 1 2.6853 -3.9210 0.4902 15 6 2.5041 -3.7675 -1.6561 16 7 3.1206 -5.0780 -1.8770 17 6 3.7734 -5.3300 -3.0289 18 8 3.8509 -4.4718 -3.8822 19 6 4.4071 -6.6783 -3.2564 20 1 3.8144 -7.4473 -2.7609 21 6 5.8269 -6.6790 -2.6837 22 8 6.4497 -7.9345 -2.9685 23 6 6.5245 -8.2368 -4.3643 24 6 5.1117 -8.2518 -4.9540 25 7 4.4650 -6.9564 -4.6988 26 6 3.1250 -6.9097 -5.2990 27 6 2.1642 -7.7630 -4.4687 28 9 2.6851 -9.0545 -4.3338 29 9 2.0063 -7.1894 -3.2025 30 1 -0.4851 0.8400 -0.0004 31 1 -0.6841 -2.4063 -0.6757 32 1 -0.4563 -1.8483 1.0101 33 1 -1.2813 -4.3837 0.5549 34 1 -0.0324 -4.0839 1.8094 35 1 0.3609 -4.9950 -1.0968 36 1 1.1269 -5.6501 0.3858 37 1 3.2592 -2.9884 -1.7613 38 1 1.7140 -3.6092 -2.3900 39 1 3.0588 -5.7643 -1.1943 40 1 5.7843 -6.5302 -1.6047 41 1 6.4039 -5.8747 -3.1401 42 1 6.9863 -9.2145 -4.5007 43 1 7.1219 -7.4782 -4.8701 44 1 5.1677 -8.4252 -6.0286 45 1 4.5307 -9.0469 -4.4868 46 1 2.7712 -5.8788 -5.3184 47 1 3.1689 -7.2979 -6.3166 48 1 1.1968 -7.8118 -4.9687 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028050193.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:53 Heat of formation + Delta-G solvation = -128.945193 kcal Electronic energy + Delta-G solvation = -33288.372639 eV Core-core repulsion = 28629.704846 eV Total energy + Delta-G solvation = -4658.667793 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.52881 -47.39053 -40.44592 -38.72858 -37.55145 -36.05353 -34.18613 -32.49617 -31.77245 -30.67682 -29.62131 -28.57404 -26.51252 -25.30797 -24.64063 -23.64027 -22.87143 -21.33067 -20.39400 -19.94240 -19.43515 -18.18189 -17.81631 -17.57514 -16.76789 -16.70363 -16.46467 -16.10364 -15.90421 -15.26933 -14.81009 -14.63238 -14.60747 -14.38400 -14.05619 -14.03539 -13.90353 -13.63970 -13.56514 -13.04468 -12.84226 -12.61213 -12.47933 -12.10408 -12.02789 -11.87380 -11.79988 -11.73795 -11.37564 -11.32096 -10.95891 -10.93297 -10.77392 -10.21035 -10.15496 -10.11505 -9.89339 -9.83206 -9.69485 -9.42498 -8.68271 -8.57781 -8.52877 -6.86205 -5.75456 -3.12082 2.73683 3.08892 3.35326 3.41691 3.45881 3.47071 3.51144 3.77798 3.91390 4.16708 4.36697 4.48822 4.59211 4.72585 4.76346 4.86761 5.00702 5.05746 5.14161 5.30411 5.33844 5.40119 5.43824 5.44579 5.52085 5.55400 5.62585 5.69497 5.81139 6.04901 6.13313 6.24996 6.38156 6.46457 6.50051 6.54764 6.62486 6.71280 6.81240 6.83145 7.06227 7.52591 7.58510 7.79174 7.80612 8.25411 8.49107 9.17176 9.78190 10.44814 11.35727 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.015878 B = 0.003071 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.003423 B = 9115.332068 C = 9922.906518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.002 4.002 3 Si 0.911 3.089 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.232 4.232 8 H 0.076 0.924 9 N -0.589 5.589 10 C 0.170 3.830 11 C -0.148 4.148 12 C -0.126 4.126 13 C 0.152 3.848 14 H 0.037 0.963 15 C 0.112 3.888 16 N -0.715 5.715 17 C 0.521 3.479 18 O -0.527 6.527 19 C 0.015 3.985 20 H 0.088 0.912 21 C 0.076 3.924 22 O -0.378 6.378 23 C 0.062 3.938 24 C -0.006 4.006 25 N -0.505 5.505 26 C 0.004 3.996 27 C 0.219 3.781 28 F -0.202 7.202 29 F -0.194 7.194 30 H 0.254 0.746 31 H 0.023 0.977 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.395 0.605 40 H 0.105 0.895 41 H 0.068 0.932 42 H 0.100 0.900 43 H 0.060 0.940 44 H 0.090 0.910 45 H 0.074 0.926 46 H 0.122 0.878 47 H 0.108 0.892 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.026 -20.688 -8.701 23.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.199 4.199 3 Si 0.741 3.259 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.360 4.360 8 H 0.094 0.906 9 N -0.314 5.314 10 C 0.046 3.954 11 C -0.187 4.187 12 C -0.164 4.164 13 C 0.043 3.957 14 H 0.055 0.945 15 C -0.013 4.013 16 N -0.366 5.366 17 C 0.304 3.696 18 O -0.403 6.403 19 C -0.097 4.097 20 H 0.106 0.894 21 C -0.002 4.002 22 O -0.296 6.296 23 C -0.015 4.015 24 C -0.133 4.133 25 N -0.229 5.229 26 C -0.125 4.125 27 C 0.163 3.837 28 F -0.184 7.184 29 F -0.175 7.175 30 H 0.064 0.936 31 H 0.041 0.959 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.228 0.772 40 H 0.123 0.877 41 H 0.086 0.914 42 H 0.118 0.882 43 H 0.079 0.921 44 H 0.108 0.892 45 H 0.092 0.908 46 H 0.140 0.860 47 H 0.126 0.874 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.384 -19.537 -9.339 22.575 hybrid contribution -0.287 0.057 0.381 0.480 sum 6.097 -19.480 -8.958 22.291 Atomic orbital electron populations 1.69918 1.04996 1.25353 1.56147 1.24859 0.95677 0.97807 1.01564 0.86218 0.78570 0.83062 0.78047 1.20966 1.21569 1.21068 1.18957 0.90396 0.82206 1.44489 0.90618 1.44563 1.04851 1.00392 1.81568 1.21561 0.84455 0.90547 0.98868 1.23001 0.97299 0.99524 0.98861 1.22599 0.96999 0.96921 0.99873 1.21113 0.94260 0.87929 0.92351 0.94495 1.22220 0.97296 0.82306 0.99479 1.46107 1.55082 1.17116 1.18291 1.19909 0.78814 0.88257 0.82608 1.90704 1.59322 1.46750 1.43536 1.22760 0.99495 0.97414 0.90039 0.89442 1.22577 0.89882 0.86763 1.00981 1.88010 1.79712 1.37851 1.24076 1.22695 0.95278 1.01712 0.81829 1.23321 0.96724 0.90800 1.02446 1.61999 1.18295 1.31341 1.11259 1.23579 0.87438 1.02829 0.98693 1.23013 1.00694 0.77522 0.82442 1.92869 1.88198 1.40882 1.96404 1.92979 1.96492 1.84352 1.43680 0.93585 0.95884 0.90397 0.92405 0.92297 0.91837 0.92435 0.91301 0.92021 0.77151 0.87672 0.91412 0.88177 0.92129 0.89217 0.90782 0.85986 0.87353 0.86878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.60 10.49 55.49 0.58 -26.02 16 2 C 0.00 -0.06 5.48 -17.43 -0.10 -0.16 16 3 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.23 -6.35 9.79 -15.06 -0.15 -6.49 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.59 -14.54 3.14 -162.32 -0.51 -15.05 16 10 C 0.17 4.03 5.48 -2.35 -0.01 4.02 16 11 C -0.15 -2.70 7.09 -24.58 -0.17 -2.88 16 12 C -0.13 -2.08 5.94 -24.90 -0.15 -2.23 16 13 C 0.15 2.97 3.25 -66.96 -0.22 2.76 16 14 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 15 C 0.11 2.13 5.06 -4.04 -0.02 2.11 16 16 N -0.71 -10.67 4.76 -60.29 -0.29 -10.96 16 17 C 0.52 7.97 4.78 -10.99 -0.05 7.92 16 18 O -0.53 -10.13 15.30 5.56 0.09 -10.05 16 19 C 0.01 0.18 1.75 -68.75 -0.12 0.06 16 20 H 0.09 1.05 5.48 -51.93 -0.28 0.76 16 21 C 0.08 0.88 6.27 37.21 0.23 1.11 16 22 O -0.38 -4.33 10.83 -35.23 -0.38 -4.71 16 23 C 0.06 0.55 7.01 37.21 0.26 0.81 16 24 C -0.01 -0.05 5.25 -3.71 -0.02 -0.07 16 25 N -0.50 -5.70 4.48 -227.73 -1.02 -6.72 16 26 C 0.00 0.04 5.46 -3.83 -0.02 0.02 16 27 C 0.22 1.97 5.14 37.16 0.19 2.16 16 28 F -0.20 -1.94 13.87 2.25 0.03 -1.91 16 29 F -0.19 -2.25 12.26 2.25 0.03 -2.22 16 30 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.02 0.59 8.12 -51.93 -0.42 0.17 16 32 H 0.08 2.06 6.74 -51.93 -0.35 1.71 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 1.04 7.82 -51.93 -0.41 0.64 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 1.50 7.94 -51.93 -0.41 1.09 16 38 H 0.06 1.30 8.10 -51.93 -0.42 0.88 16 39 H 0.40 4.96 8.15 -40.82 -0.33 4.63 16 40 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.09 0.63 8.05 -51.93 -0.42 0.21 16 45 H 0.07 0.70 5.28 -51.93 -0.27 0.42 16 46 H 0.12 1.47 6.54 -51.92 -0.34 1.13 16 47 H 0.11 0.75 7.96 -51.93 -0.41 0.33 16 48 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 373.36 15.07 5.63 5.63 Total: -1.00 -32.69 373.36 -8.64 -41.33 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -7.42 Total: 4.44 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: -0.34 Total: 9.15 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: -1.23 Total: -58.75 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.30 Total: -14.76 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.06 Total: -4.13 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.69 -8.64 -41.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028050193.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.614 kcal (2) G-P(sol) polarization free energy of solvation -32.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds