Wall clock time and date at job start Wed Apr 1 2020 04:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99540 * 2 1 4 4 H 1.48502 * 109.47119 * 239.99905 * 3 2 1 5 5 H 1.48500 * 109.47283 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47394 * 120.00246 * 3 2 1 7 7 C 1.38803 * 120.00582 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00766 * 180.02562 * 7 2 1 9 9 N 1.36946 * 119.99953 * 359.97438 * 7 2 1 10 10 C 1.47746 * 125.81726 * 348.11228 * 9 7 2 11 11 C 1.54916 * 104.83723 * 204.24419 * 10 9 7 12 12 C 1.55155 * 101.58018 * 322.90877 * 11 10 9 13 13 C 1.47013 * 125.64928 * 168.10749 * 9 7 2 14 14 H 1.08999 * 109.88436 * 59.32776 * 13 9 7 15 15 C 1.53001 * 109.88417 * 298.31342 * 13 9 7 16 16 N 1.46502 * 109.47245 * 178.22313 * 15 13 9 17 17 C 1.34777 * 120.00056 * 183.53883 * 16 15 13 18 18 O 1.21276 * 119.99786 * 0.02562 * 17 16 15 19 19 C 1.50697 * 120.00065 * 180.02562 * 17 16 15 20 20 H 1.09005 * 109.50637 * 32.70831 * 19 17 16 21 21 C 1.53096 * 109.50741 * 272.61917 * 19 17 16 22 22 O 1.43015 * 109.25928 * 183.21602 * 21 19 17 23 23 C 1.43013 * 113.74006 * 58.67287 * 22 21 19 24 24 C 1.53097 * 109.25589 * 301.32893 * 23 22 21 25 25 N 1.47016 * 109.29400 * 56.82656 * 24 23 22 26 26 C 1.46900 * 110.99775 * 177.62890 * 25 24 23 27 27 C 1.52996 * 109.47377 * 74.14817 * 26 25 24 28 28 F 1.39906 * 109.46954 * 305.76193 * 27 26 25 29 29 F 1.39903 * 109.47459 * 65.75654 * 27 26 25 30 30 H 0.97003 * 120.00367 * 0.02562 * 1 2 3 31 31 H 1.08997 * 110.43703 * 85.37246 * 10 9 7 32 32 H 1.08997 * 110.29339 * 323.04929 * 10 9 7 33 33 H 1.08997 * 111.00642 * 204.82743 * 11 10 9 34 34 H 1.09000 * 111.03482 * 80.99487 * 11 10 9 35 35 H 1.09002 * 110.71370 * 277.13308 * 12 11 10 36 36 H 1.09005 * 110.86759 * 153.93599 * 12 11 10 37 37 H 1.09005 * 109.46702 * 58.22661 * 15 13 9 38 38 H 1.08992 * 109.47421 * 298.22937 * 15 13 9 39 39 H 0.97003 * 119.99784 * 3.54277 * 16 15 13 40 40 H 1.09006 * 109.50808 * 63.27970 * 21 19 17 41 41 H 1.08999 * 109.50750 * 303.15215 * 21 19 17 42 42 H 1.08992 * 109.50536 * 181.39323 * 23 22 21 43 43 H 1.09000 * 109.54307 * 61.28126 * 23 22 21 44 44 H 1.09001 * 109.50543 * 176.78132 * 24 23 22 45 45 H 1.08994 * 109.50684 * 296.86983 * 24 23 22 46 46 H 1.09008 * 109.47106 * 194.14581 * 26 25 24 47 47 H 1.08998 * 109.47447 * 314.14028 * 26 25 24 48 48 H 1.09001 * 109.47476 * 185.76246 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1039 1.6966 1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1218 -2.5508 0.2468 11 6 -0.2769 -4.0078 0.7499 12 6 0.7732 -4.7504 -0.1179 13 6 1.9097 -3.7145 -0.2472 14 1 2.6853 -3.9210 0.4902 15 6 2.5041 -3.7675 -1.6561 16 7 3.1206 -5.0780 -1.8770 17 6 3.7734 -5.3300 -3.0289 18 8 3.8509 -4.4718 -3.8822 19 6 4.4071 -6.6783 -3.2564 20 1 3.8144 -7.4473 -2.7609 21 6 5.8269 -6.6790 -2.6837 22 8 6.4497 -7.9345 -2.9685 23 6 6.5245 -8.2368 -4.3643 24 6 5.1117 -8.2518 -4.9540 25 7 4.4650 -6.9564 -4.6988 26 6 3.1250 -6.9097 -5.2990 27 6 2.1642 -7.7630 -4.4687 28 9 2.6851 -9.0545 -4.3338 29 9 2.0063 -7.1894 -3.2025 30 1 -0.4851 0.8400 -0.0004 31 1 -0.6841 -2.4063 -0.6757 32 1 -0.4563 -1.8483 1.0101 33 1 -1.2813 -4.3837 0.5549 34 1 -0.0324 -4.0839 1.8094 35 1 0.3609 -4.9950 -1.0968 36 1 1.1269 -5.6501 0.3858 37 1 3.2592 -2.9884 -1.7613 38 1 1.7140 -3.6092 -2.3900 39 1 3.0588 -5.7643 -1.1943 40 1 5.7843 -6.5302 -1.6047 41 1 6.4039 -5.8747 -3.1401 42 1 6.9863 -9.2145 -4.5007 43 1 7.1219 -7.4782 -4.8701 44 1 5.1677 -8.4252 -6.0286 45 1 4.5307 -9.0469 -4.4868 46 1 2.7712 -5.8788 -5.3184 47 1 3.1689 -7.2979 -6.3166 48 1 1.1968 -7.8118 -4.9687 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028050193.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:52 Heat of formation + Delta-G solvation = -153.591127 kcal Electronic energy + Delta-G solvation = -33289.441367 eV Core-core repulsion = 28629.704846 eV Total energy + Delta-G solvation = -4659.736521 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.27005 -48.14115 -41.49918 -39.93975 -39.08980 -36.92037 -35.69088 -34.40421 -32.75101 -31.49149 -31.32621 -30.16861 -27.36164 -26.77100 -26.15864 -25.03149 -23.63449 -22.36768 -21.96855 -21.28078 -20.96458 -19.06517 -18.82419 -18.57987 -18.29264 -17.59310 -17.54372 -17.28408 -16.82992 -16.69724 -16.14867 -16.00679 -15.74326 -15.65264 -15.33436 -15.17331 -14.87703 -14.76677 -14.48882 -14.30605 -14.00961 -13.86656 -13.63334 -13.51439 -13.34658 -13.21879 -12.98394 -12.88191 -12.77870 -12.66178 -12.56751 -12.19921 -12.06365 -11.85068 -11.73237 -11.66792 -11.45828 -11.40562 -11.07662 -10.69718 -10.62410 -10.05952 -9.34890 -8.87843 -7.87215 -5.24692 1.44248 1.47423 1.52987 1.53366 1.98669 2.44840 2.50275 2.78265 2.94789 3.23976 3.31346 3.44571 3.63512 3.68195 3.74464 3.81767 3.93347 3.97615 3.99589 4.02070 4.19579 4.26311 4.34346 4.43027 4.45394 4.54702 4.57651 4.60840 4.67235 4.73421 4.83434 4.96200 4.97058 4.99602 5.14786 5.21133 5.36943 5.47370 5.54295 5.58561 5.67170 5.76748 5.78283 6.01274 6.23145 6.58370 7.08785 7.25591 7.76117 8.41671 9.22632 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.015878 B = 0.003071 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.003423 B = 9115.332068 C = 9922.906518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.059 4.059 3 Si 0.971 3.029 4 H -0.283 1.283 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.239 4.239 8 H 0.076 0.924 9 N -0.611 5.611 10 C 0.172 3.828 11 C -0.133 4.133 12 C -0.112 4.112 13 C 0.148 3.852 14 H 0.048 0.952 15 C 0.135 3.865 16 N -0.701 5.701 17 C 0.524 3.476 18 O -0.570 6.570 19 C 0.028 3.972 20 H 0.097 0.903 21 C 0.076 3.924 22 O -0.387 6.387 23 C 0.055 3.945 24 C -0.001 4.001 25 N -0.525 5.525 26 C 0.003 3.997 27 C 0.217 3.783 28 F -0.203 7.203 29 F -0.211 7.211 30 H 0.248 0.752 31 H -0.009 1.009 32 H 0.042 0.958 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.101 0.899 37 H 0.034 0.966 38 H 0.035 0.965 39 H 0.411 0.589 40 H 0.117 0.883 41 H 0.052 0.948 42 H 0.127 0.873 43 H 0.057 0.943 44 H 0.112 0.888 45 H 0.074 0.926 46 H 0.094 0.906 47 H 0.138 0.862 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.797 -23.731 -8.824 26.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.253 4.253 3 Si 0.799 3.201 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.200 1.200 7 C -0.368 4.368 8 H 0.094 0.906 9 N -0.336 5.336 10 C 0.047 3.953 11 C -0.171 4.171 12 C -0.149 4.149 13 C 0.041 3.959 14 H 0.066 0.934 15 C 0.009 3.991 16 N -0.353 5.353 17 C 0.310 3.690 18 O -0.448 6.448 19 C -0.084 4.084 20 H 0.114 0.886 21 C -0.001 4.001 22 O -0.305 6.305 23 C -0.022 4.022 24 C -0.128 4.128 25 N -0.250 5.250 26 C -0.126 4.126 27 C 0.162 3.838 28 F -0.184 7.184 29 F -0.192 7.192 30 H 0.057 0.943 31 H 0.009 0.991 32 H 0.060 0.940 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.119 0.881 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.248 0.752 40 H 0.135 0.865 41 H 0.070 0.930 42 H 0.145 0.855 43 H 0.075 0.925 44 H 0.130 0.870 45 H 0.092 0.908 46 H 0.112 0.888 47 H 0.156 0.844 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 7.181 -22.649 -9.447 25.570 hybrid contribution -0.470 0.944 0.346 1.110 sum 6.711 -21.705 -9.101 24.474 Atomic orbital electron populations 1.70125 1.06196 1.25393 1.57698 1.25612 0.96508 1.00847 1.02285 0.85270 0.77335 0.79319 0.78142 1.20958 1.21842 1.19988 1.19265 0.90716 0.83667 1.43201 0.90637 1.44819 1.05399 1.01524 1.81852 1.21375 0.83782 0.93677 0.96477 1.22865 0.99403 0.95397 0.99478 1.22574 0.94958 0.97124 1.00281 1.21311 0.95695 0.86603 0.92322 0.93402 1.21628 0.95525 0.83436 0.98544 1.45830 1.54656 1.15880 1.18941 1.20469 0.77857 0.89071 0.81635 1.90689 1.60763 1.48466 1.44892 1.22605 0.99472 0.94973 0.91342 0.88588 1.22558 0.89265 0.86723 1.01591 1.88003 1.79563 1.37300 1.25662 1.22947 0.95606 1.03020 0.80600 1.23388 0.96182 0.89376 1.03866 1.61982 1.19550 1.33050 1.10375 1.23578 0.86912 1.01678 1.00424 1.23236 1.01962 0.77036 0.81597 1.92865 1.88393 1.40821 1.96356 1.92933 1.96575 1.84708 1.44985 0.94312 0.99093 0.93997 0.89883 0.91260 0.91513 0.88095 0.94769 0.94619 0.75232 0.86488 0.92951 0.85505 0.92477 0.86979 0.90795 0.88803 0.84412 0.83570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.05 10.49 21.65 0.23 -56.83 16 2 C -0.06 -3.38 5.48 84.86 0.46 -2.92 16 3 Si 0.97 46.64 29.55 68.60 2.03 48.66 16 4 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 5 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 6 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.24 -13.43 9.79 84.03 0.82 -12.61 16 8 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 9 N -0.61 -30.76 3.14 -667.47 -2.09 -32.86 16 10 C 0.17 8.33 5.48 86.80 0.48 8.81 16 11 C -0.13 -4.59 7.09 31.99 0.23 -4.36 16 12 C -0.11 -3.38 5.94 31.78 0.19 -3.20 16 13 C 0.15 5.68 3.25 45.34 0.15 5.83 16 14 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 15 C 0.14 5.21 5.06 86.38 0.44 5.65 16 16 N -0.70 -20.36 4.76 -463.06 -2.20 -22.56 16 17 C 0.52 15.90 4.78 87.66 0.42 16.32 16 18 O -0.57 -22.45 15.30 -3.02 -0.05 -22.49 16 19 C 0.03 0.65 1.75 44.18 0.08 0.72 16 20 H 0.10 2.08 5.48 -2.38 -0.01 2.07 16 21 C 0.08 1.69 6.27 72.01 0.45 2.14 16 22 O -0.39 -8.06 10.83 -148.98 -1.61 -9.68 16 23 C 0.05 0.85 7.01 72.01 0.50 1.35 16 24 C 0.00 -0.02 5.25 86.31 0.45 0.43 16 25 N -0.52 -11.01 4.48 -874.39 -3.92 -14.92 16 26 C 0.00 0.05 5.46 86.30 0.47 0.53 16 27 C 0.22 3.36 5.14 71.98 0.37 3.73 16 28 F -0.20 -3.28 13.87 44.97 0.62 -2.65 16 29 F -0.21 -4.44 12.26 44.97 0.55 -3.89 16 30 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 31 H -0.01 -0.48 8.12 -2.39 -0.02 -0.50 16 32 H 0.04 2.31 6.74 -2.39 -0.02 2.29 16 33 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.07 2.02 7.82 -2.39 -0.02 2.00 16 36 H 0.10 2.27 8.14 -2.38 -0.02 2.25 16 37 H 0.03 1.55 7.94 -2.38 -0.02 1.53 16 38 H 0.04 1.56 8.10 -2.39 -0.02 1.54 16 39 H 0.41 9.37 8.15 -92.71 -0.76 8.62 16 40 H 0.12 2.21 8.14 -2.38 -0.02 2.20 16 41 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.11 1.19 8.05 -2.39 -0.02 1.17 16 45 H 0.07 1.16 5.28 -2.39 -0.01 1.15 16 46 H 0.09 2.25 6.54 -2.38 -0.02 2.23 16 47 H 0.14 1.53 7.96 -2.39 -0.02 1.51 16 48 H 0.15 1.32 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -74.87 373.36 -0.71 -75.58 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 0.22 Total: 19.20 kcal Atomic # 6 Polarization: 16.92 SS G_CDS: 5.51 Total: 22.43 kcal Atomic # 7 Polarization: -119.18 SS G_CDS: -7.99 Total: -127.17 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -1.66 Total: -32.17 kcal Atomic # 9 Polarization: -7.72 SS G_CDS: 1.18 Total: -6.54 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.66 kcal Total: -74.87 -0.71 -75.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028050193.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.010 kcal (2) G-P(sol) polarization free energy of solvation -74.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds