Wall clock time and date at job start Wed Apr 1 2020 04:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99966 * 2 1 4 4 H 1.48508 * 109.46958 * 274.99403 * 3 2 1 5 5 H 1.48497 * 109.47056 * 34.98665 * 3 2 1 6 6 H 1.48494 * 109.47436 * 154.99215 * 3 2 1 7 7 C 1.38807 * 120.00277 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00515 * 186.04087 * 7 2 1 9 9 N 1.36940 * 119.99945 * 6.04070 * 7 2 1 10 10 C 1.47211 * 125.89068 * 353.08501 * 9 7 2 11 11 C 1.54726 * 107.24348 * 183.75640 * 10 9 7 12 12 C 1.54201 * 102.06516 * 21.51366 * 11 10 9 13 13 H 1.09004 * 108.73345 * 78.17558 * 12 11 10 14 14 C 1.50931 * 112.77152 * 199.86177 * 12 11 10 15 15 N 1.46708 * 111.14337 * 70.08669 * 14 12 11 16 16 C 1.34774 * 121.35845 * 232.20284 * 15 14 12 17 17 O 1.21280 * 120.00097 * 359.97438 * 16 15 14 18 18 C 1.50705 * 119.99901 * 179.97438 * 16 15 14 19 19 C 1.53002 * 109.47164 * 179.97438 * 18 16 15 20 20 C 1.50695 * 109.47168 * 179.97438 * 19 18 16 21 21 C 1.38239 * 120.40305 * 90.00367 * 20 19 18 22 22 N 1.31844 * 120.81800 * 180.02562 * 21 20 19 23 23 C 1.31867 * 121.75435 * 359.97136 * 22 21 20 24 24 C 1.38426 * 120.72451 * 0.02562 * 23 22 21 25 25 F 1.35100 * 120.44320 * 179.97438 * 24 23 22 26 26 C 1.38591 * 120.40840 * 269.97586 * 20 19 18 27 27 C 1.47211 * 117.28170 * 52.46328 * 15 14 12 28 28 C 1.53264 * 107.49622 * 301.62136 * 27 15 14 29 29 C 1.48633 * 125.88867 * 173.10384 * 9 7 2 30 30 H 1.08997 * 112.01086 * 31.84287 * 29 9 7 31 31 H 0.96995 * 120.00168 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.88328 * 303.16334 * 10 9 7 33 33 H 1.09000 * 109.89171 * 64.18564 * 10 9 7 34 34 H 1.08995 * 110.91130 * 263.32241 * 11 10 9 35 35 H 1.09001 * 110.91228 * 139.70526 * 11 10 9 36 36 H 1.08998 * 109.14692 * 309.65336 * 14 12 11 37 37 H 1.09001 * 109.14326 * 190.51034 * 14 12 11 38 38 H 1.08997 * 109.47504 * 59.99547 * 18 16 15 39 39 H 1.09006 * 109.46759 * 299.99222 * 18 16 15 40 40 H 1.08997 * 109.47056 * 59.99547 * 19 18 16 41 41 H 1.09001 * 109.46787 * 300.00159 * 19 18 16 42 42 H 1.07999 * 119.59299 * 359.96947 * 21 20 19 43 43 H 1.07998 * 119.64254 * 180.02562 * 23 22 21 44 44 H 1.08002 * 120.79490 * 0.02562 * 26 20 19 45 45 H 1.09007 * 109.80363 * 61.20873 * 27 15 14 46 46 H 1.09002 * 109.80702 * 182.08130 * 27 15 14 47 47 H 1.08993 * 109.33934 * 297.71555 * 28 27 15 48 48 H 1.09002 * 109.10414 * 178.34031 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3921 2.1074 -1.3948 5 1 1.5043 2.6199 0.8028 6 1 3.5965 1.4121 0.5918 7 6 2.0103 -1.2021 -0.0005 8 1 3.0857 -1.2048 0.0979 9 7 1.3313 -2.3847 -0.1259 10 6 -0.1321 -2.5440 -0.1241 11 6 -0.4285 -4.0610 -0.1952 12 6 0.8903 -4.6715 0.3205 13 1 0.9122 -4.5904 1.4073 14 6 1.0616 -6.1162 -0.0813 15 7 1.3054 -6.2393 -1.5227 16 6 0.5673 -7.0647 -2.2909 17 8 -0.3195 -7.7254 -1.7928 18 6 0.8438 -7.1669 -3.7688 19 6 -0.1273 -8.1657 -4.4016 20 6 0.1488 -8.2673 -5.8795 21 6 1.0513 -9.1976 -6.3603 22 7 1.2994 -9.2933 -7.6516 23 6 0.7031 -8.5139 -8.5325 24 6 -0.2127 -7.5588 -8.1261 25 9 -0.8199 -6.7630 -9.0335 26 6 -0.4993 -7.4298 -6.7735 27 6 2.3931 -5.4288 -2.0947 28 6 2.0790 -3.9589 -1.7950 29 6 1.9449 -3.7288 -0.2868 30 1 2.9024 -3.8051 0.2285 31 1 -0.4850 0.8400 0.0004 32 1 -0.5493 -2.1273 0.7927 33 1 -0.5612 -2.0390 -0.9895 34 1 -0.6257 -4.3711 -1.2213 35 1 -1.2609 -4.3257 0.4567 36 1 0.1582 -6.6687 0.1770 37 1 1.9063 -6.5404 0.4616 38 1 1.8674 -7.5076 -3.9243 39 1 0.7121 -6.1887 -4.2315 40 1 -1.1510 -7.8254 -4.2461 41 1 0.0047 -9.1437 -3.9387 42 1 1.5601 -9.8535 -5.6694 43 1 0.9317 -8.6220 -9.5824 44 1 -1.2094 -6.6937 -6.4263 45 1 3.3418 -5.7074 -1.6359 46 1 2.4430 -5.5854 -3.1723 47 1 1.1450 -3.6824 -2.2842 48 1 2.8849 -3.3357 -2.1825 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036912256.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:14 Heat of formation + Delta-G solvation = -20.809365 kcal Electronic energy + Delta-G solvation = -30499.911479 eV Core-core repulsion = 26276.702032 eV Total energy + Delta-G solvation = -4223.209447 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.33004 -40.67795 -40.18034 -38.33343 -35.31522 -34.95108 -32.71383 -32.04164 -31.41344 -30.53033 -29.34334 -28.27269 -25.87903 -24.84267 -24.12471 -23.41922 -22.69640 -21.96691 -20.05837 -19.69918 -18.16920 -17.83303 -17.69914 -17.29591 -16.90908 -16.85415 -16.18455 -15.77801 -15.63507 -14.80883 -14.70341 -14.30846 -14.15771 -13.94747 -13.86416 -13.68005 -13.53675 -13.23626 -13.11381 -12.78959 -12.77108 -12.49244 -12.28071 -11.99884 -11.71178 -11.58872 -11.38246 -11.34771 -11.12052 -10.85431 -10.77178 -10.18260 -10.11596 -10.02410 -9.95107 -9.86117 -9.78963 -9.62003 -9.56170 -9.25722 -8.64491 -8.46521 -6.87569 -5.75216 -3.08192 0.48332 0.66080 2.65827 3.01987 3.23205 3.36710 3.41987 3.44318 3.59872 4.00910 4.18096 4.33318 4.44619 4.47133 4.55083 4.71747 4.76098 4.94408 5.04826 5.09091 5.25227 5.29875 5.33085 5.38324 5.40540 5.44356 5.49532 5.57163 5.59605 5.78366 5.79747 5.84294 5.88082 5.97189 6.01530 6.20800 6.23277 6.25186 6.35524 6.49549 6.57283 6.72739 6.86319 7.03263 7.38945 7.51781 7.52959 7.61779 7.80010 8.21027 8.21529 9.17567 9.77743 10.46149 11.36574 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.012817 B = 0.002455 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.037899 B =11402.924714 C =12630.589255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.602 5.602 10 C 0.178 3.822 11 C -0.135 4.135 12 C -0.114 4.114 13 H 0.080 0.920 14 C 0.127 3.873 15 N -0.602 5.602 16 C 0.517 3.483 17 O -0.549 6.549 18 C -0.135 4.135 19 C -0.063 4.063 20 C -0.100 4.100 21 C 0.091 3.909 22 N -0.455 5.455 23 C 0.066 3.934 24 C 0.052 3.948 25 F -0.130 7.130 26 C -0.107 4.107 27 C 0.105 3.895 28 C -0.142 4.142 29 C 0.166 3.834 30 H 0.060 0.940 31 H 0.252 0.748 32 H 0.044 0.956 33 H 0.039 0.961 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.087 0.913 37 H 0.061 0.939 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.164 0.836 43 H 0.166 0.834 44 H 0.150 0.850 45 H 0.070 0.930 46 H 0.077 0.923 47 H 0.067 0.933 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.278 -18.160 -11.611 21.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.357 4.357 8 H 0.095 0.905 9 N -0.326 5.326 10 C 0.054 3.946 11 C -0.173 4.173 12 C -0.134 4.134 13 H 0.098 0.902 14 C 0.004 3.996 15 N -0.335 5.335 16 C 0.306 3.694 17 O -0.428 6.428 18 C -0.175 4.175 19 C -0.101 4.101 20 C -0.102 4.102 21 C -0.066 4.066 22 N -0.163 5.163 23 C -0.092 4.092 24 C 0.031 3.969 25 F -0.108 7.108 26 C -0.133 4.133 27 C -0.019 4.019 28 C -0.183 4.183 29 C 0.058 3.942 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.105 0.895 37 H 0.079 0.921 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.182 0.818 43 H 0.183 0.817 44 H 0.167 0.833 45 H 0.088 0.912 46 H 0.095 0.905 47 H 0.086 0.914 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.320 -18.824 -11.636 22.251 hybrid contribution -0.257 2.027 0.032 2.044 sum 2.063 -16.796 -11.604 20.519 Atomic orbital electron populations 1.69977 1.04916 1.25017 1.56683 1.24817 0.95658 0.97610 1.02237 0.86154 0.78681 0.83792 0.77469 1.21682 1.21822 1.20666 1.19033 0.90900 0.82497 1.43223 0.90530 1.44950 1.01422 1.00637 1.85579 1.21195 0.84328 0.88334 1.00763 1.22749 0.95666 0.99237 0.99651 1.21889 0.97858 0.92916 1.00761 0.90186 1.20955 1.02038 0.96944 0.79648 1.48107 1.34115 1.42126 1.09172 1.20423 0.81271 0.79123 0.88613 1.90683 1.32024 1.45040 1.75011 1.21671 1.01401 1.01695 0.92764 1.20331 1.00646 1.01009 0.88121 1.20898 0.96466 0.95621 0.97190 1.22838 0.95212 0.96674 0.91866 1.67749 1.22785 1.22784 1.02936 1.22910 0.93559 0.91917 1.00841 1.18840 0.97047 0.93649 0.87408 1.91543 1.81487 1.71827 1.65958 1.21682 1.00499 1.00009 0.91122 1.21997 0.89357 0.92214 0.98298 1.22600 1.02590 0.92786 1.00316 1.21174 0.94665 0.86254 0.92097 0.92187 0.93784 0.93802 0.94269 0.92804 0.92461 0.89487 0.92071 0.88682 0.88579 0.89396 0.89188 0.81843 0.81662 0.83267 0.91220 0.90466 0.91439 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.60 10.40 55.49 0.58 -26.03 16 2 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 3 Si 0.91 21.66 29.56 -169.99 -5.02 16.64 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.23 -6.08 10.29 -15.06 -0.15 -6.23 16 8 H 0.08 1.97 7.84 -52.49 -0.41 1.56 16 9 N -0.60 -14.41 2.88 -161.77 -0.47 -14.87 16 10 C 0.18 4.23 5.09 -2.75 -0.01 4.21 16 11 C -0.13 -2.51 5.89 -25.19 -0.15 -2.66 16 12 C -0.11 -1.89 2.89 -90.54 -0.26 -2.15 16 13 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 14 C 0.13 1.76 5.83 -4.97 -0.03 1.73 16 15 N -0.60 -7.75 2.79 -174.02 -0.49 -8.23 16 16 C 0.52 6.58 7.72 -10.98 -0.08 6.49 16 17 O -0.55 -8.70 15.45 5.56 0.09 -8.62 16 18 C -0.14 -1.20 4.05 -27.88 -0.11 -1.31 16 19 C -0.06 -0.51 4.66 -27.88 -0.13 -0.64 16 20 C -0.10 -0.78 5.15 -104.49 -0.54 -1.32 16 21 C 0.09 0.72 10.86 -17.55 -0.19 0.53 16 22 N -0.46 -4.22 10.36 -13.20 -0.14 -4.36 16 23 C 0.07 0.55 11.17 -17.47 -0.20 0.36 16 24 C 0.05 0.46 7.34 -39.28 -0.29 0.17 16 25 F -0.13 -1.24 17.28 2.25 0.04 -1.20 16 26 C -0.11 -0.89 9.85 -39.22 -0.39 -1.27 16 27 C 0.10 1.21 6.39 -3.52 -0.02 1.19 16 28 C -0.14 -2.26 5.24 -26.51 -0.14 -2.40 16 29 C 0.17 3.06 3.62 -66.18 -0.24 2.82 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.04 1.17 7.47 -51.93 -0.39 0.78 16 33 H 0.04 1.04 7.47 -51.93 -0.39 0.65 16 34 H 0.05 1.00 7.41 -51.93 -0.38 0.61 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.09 1.29 7.04 -51.93 -0.37 0.92 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.66 7.89 -51.93 -0.41 0.25 16 39 H 0.10 0.83 7.82 -51.93 -0.41 0.42 16 40 H 0.09 0.80 8.05 -51.93 -0.42 0.38 16 41 H 0.09 0.72 8.05 -51.93 -0.42 0.30 16 42 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.17 1.00 8.06 -52.49 -0.42 0.58 16 44 H 0.15 1.09 8.06 -52.49 -0.42 0.66 16 45 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 46 H 0.08 0.71 6.05 -51.93 -0.31 0.40 16 47 H 0.07 1.23 6.92 -51.93 -0.36 0.87 16 48 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 384.92 15.07 5.80 5.80 Total: -1.00 -31.90 384.92 -9.84 -41.74 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -7.20 Total: -0.09 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -3.03 Total: -0.77 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: -0.51 Total: -53.49 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.09 Total: -8.62 kcal Atomic # 9 Polarization: -1.24 SS G_CDS: 0.04 Total: -1.20 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.90 -9.84 -41.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036912256.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.935 kcal (2) G-P(sol) polarization free energy of solvation -31.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds