Wall clock time and date at job start Wed Apr 1 2020 04:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86804 * 120.00026 * 2 1 4 4 H 1.48499 * 109.46980 * 274.96295 * 3 2 1 5 5 H 1.48503 * 109.47024 * 34.96040 * 3 2 1 6 6 H 1.48497 * 109.47446 * 154.95836 * 3 2 1 7 7 C 1.38811 * 120.00331 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99975 * 170.93653 * 7 2 1 9 9 N 1.36942 * 119.99832 * 350.93482 * 7 2 1 10 10 C 1.47427 * 125.64786 * 346.14925 * 9 7 2 11 11 C 1.55121 * 104.93727 * 203.96816 * 10 9 7 12 12 C 1.55151 * 101.48660 * 323.21787 * 11 10 9 13 13 H 1.09003 * 110.72286 * 276.83548 * 12 11 10 14 14 C 1.53004 * 110.72238 * 153.74126 * 12 11 10 15 15 C 1.53039 * 109.46235 * 182.44286 * 14 12 11 16 16 C 1.53182 * 109.31233 * 178.61445 * 15 14 12 17 17 N 1.46929 * 108.78068 * 54.63016 * 16 15 14 18 18 C 1.34776 * 120.62953 * 126.36811 * 17 16 15 19 19 O 1.21553 * 120.00242 * 4.40936 * 18 17 16 20 20 C 1.47846 * 119.99932 * 184.41120 * 18 17 16 21 21 C 1.39560 * 120.54977 * 134.32514 * 20 18 17 22 22 N 1.31652 * 120.62373 * 179.72301 * 21 20 18 23 23 C 1.31946 * 121.90921 * 0.02562 * 22 21 20 24 24 C 1.38539 * 121.04307 * 359.97438 * 23 22 21 25 25 F 1.35094 * 120.37418 * 179.97438 * 24 23 22 26 26 C 1.38616 * 119.24890 * 0.02562 * 24 23 22 27 27 C 1.46929 * 118.73873 * 306.64732 * 17 16 15 28 28 C 1.52765 * 109.00687 * 53.30649 * 27 17 16 29 29 C 1.47016 * 125.64619 * 166.09870 * 9 7 2 30 30 H 0.97003 * 120.00802 * 0.02562 * 1 2 3 31 31 H 1.09002 * 110.36071 * 322.92824 * 10 9 7 32 32 H 1.08994 * 110.36967 * 85.14175 * 10 9 7 33 33 H 1.09007 * 111.15677 * 205.12838 * 11 10 9 34 34 H 1.08999 * 110.94232 * 81.21381 * 11 10 9 35 35 H 1.08999 * 109.44091 * 302.40825 * 14 12 11 36 36 H 1.08995 * 109.49709 * 58.65570 * 15 14 12 37 37 H 1.09010 * 109.49457 * 298.56198 * 15 14 12 38 38 H 1.09006 * 109.58819 * 294.84206 * 16 15 14 39 39 H 1.09003 * 109.70659 * 174.49068 * 16 15 14 40 40 H 1.07998 * 119.69049 * 359.70389 * 21 20 18 41 41 H 1.07999 * 119.48155 * 180.02562 * 23 22 21 42 42 H 1.08010 * 120.86450 * 180.02562 * 26 24 23 43 43 H 1.08996 * 109.58306 * 173.13910 * 27 17 16 44 44 H 1.08998 * 109.58201 * 293.56627 * 27 17 16 45 45 H 1.08996 * 109.56014 * 185.55590 * 28 27 17 46 46 H 1.08997 * 109.36400 * 65.49808 * 28 27 17 47 47 H 1.09000 * 109.88154 * 59.56778 * 29 9 7 48 48 H 1.08991 * 110.01858 * 298.46918 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3927 2.1070 -1.3948 5 1 1.5039 2.6202 0.8023 6 1 3.5962 1.4123 0.5926 7 6 2.0102 -1.2021 0.0005 8 1 3.0801 -1.2079 -0.1468 9 7 1.3384 -2.3806 0.1879 10 6 -0.0451 -2.5120 0.6801 11 6 -0.1193 -3.9370 1.2886 12 6 0.7771 -4.7386 0.3083 13 1 0.2112 -5.0398 -0.5734 14 6 1.3825 -5.9597 1.0036 15 6 2.3076 -6.6941 0.0304 16 6 2.9385 -7.8959 0.7404 17 7 1.8668 -8.7305 1.3005 18 6 1.8003 -10.0460 1.0146 19 8 2.6757 -10.5692 0.3532 20 6 0.6627 -10.8526 1.5055 21 6 0.0055 -11.7432 0.6554 22 7 -1.0043 -12.4661 1.0924 23 6 -1.4351 -12.3822 2.3367 24 6 -0.8370 -11.5224 3.2434 25 9 -1.2895 -11.4469 4.5141 26 6 0.2303 -10.7395 2.8318 27 6 0.8653 -8.1026 2.1733 28 6 0.2608 -6.8996 1.4515 29 6 1.8770 -3.7241 -0.0694 30 1 -0.4851 0.8400 -0.0004 31 1 -0.2489 -1.7613 1.4436 32 1 -0.7517 -2.4154 -0.1441 33 1 -1.1417 -4.3151 1.2813 34 1 0.2940 -3.9520 2.2971 35 1 1.9539 -5.6357 1.8734 36 1 3.0926 -6.0171 -0.3063 37 1 1.7317 -7.0399 -0.8281 38 1 3.5872 -7.5466 1.5438 39 1 3.5214 -8.4795 0.0278 40 1 0.3281 -11.8400 -0.3707 41 1 -2.2667 -12.9941 2.6536 42 1 0.7163 -10.0606 3.5170 43 1 0.0793 -8.8217 2.4037 44 1 1.3415 -7.7705 3.0957 45 1 -0.4108 -6.3689 2.1263 46 1 -0.2957 -7.2434 0.5797 47 1 2.7624 -3.8922 0.5437 48 1 2.1313 -3.8285 -1.1241 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039125162.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:15 Heat of formation + Delta-G solvation = -17.064427 kcal Electronic energy + Delta-G solvation = -30471.172182 eV Core-core repulsion = 26248.125128 eV Total energy + Delta-G solvation = -4223.047054 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.53323 -41.32020 -39.83076 -38.47146 -36.74873 -34.19374 -33.24346 -31.81877 -31.58378 -31.15737 -29.22030 -27.91194 -25.91551 -24.91249 -24.47155 -23.52674 -23.17300 -21.35962 -20.10878 -19.83297 -19.42821 -18.33449 -17.74992 -17.63924 -16.90561 -16.79948 -16.36598 -16.11866 -15.49978 -14.98178 -14.65614 -14.53833 -14.46424 -14.25265 -13.97291 -13.82445 -13.81989 -13.69164 -13.17768 -13.01472 -12.84326 -12.43290 -12.40163 -11.90225 -11.66700 -11.46735 -11.20316 -11.15208 -10.92783 -10.82258 -10.80492 -10.57262 -10.41111 -10.10583 -10.04520 -9.93810 -9.78752 -9.72667 -9.66152 -9.58707 -8.94879 -8.57893 -6.75898 -5.75795 -3.09139 0.04269 0.36135 2.18970 2.52421 3.01874 3.37474 3.38263 3.44098 3.46085 3.76932 3.90973 4.05816 4.13100 4.46196 4.47834 4.52036 4.69980 4.76131 4.90022 4.95732 5.06720 5.10712 5.15425 5.27791 5.31882 5.42520 5.50827 5.54435 5.56941 5.61898 5.74663 5.83655 5.89504 5.93025 5.93479 6.05077 6.10444 6.30598 6.32650 6.38496 6.56727 6.62175 6.76588 6.95164 6.98864 7.15534 7.47070 7.61027 7.68189 7.77187 8.27355 9.19561 9.81922 10.51253 11.37801 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.021539 B = 0.002132 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.649460 B =13131.880547 C =13853.263296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.230 4.230 8 H 0.074 0.926 9 N -0.603 5.603 10 C 0.174 3.826 11 C -0.140 4.140 12 C -0.093 4.093 13 H 0.069 0.931 14 C -0.074 4.074 15 C -0.130 4.130 16 C 0.112 3.888 17 N -0.597 5.597 18 C 0.564 3.436 19 O -0.528 6.528 20 C -0.147 4.147 21 C 0.143 3.857 22 N -0.455 5.455 23 C 0.094 3.906 24 C 0.046 3.954 25 F -0.124 7.124 26 C -0.083 4.083 27 C 0.091 3.909 28 C -0.129 4.129 29 C 0.142 3.858 30 H 0.252 0.748 31 H 0.059 0.941 32 H 0.027 0.973 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.174 0.826 41 H 0.174 0.826 42 H 0.158 0.842 43 H 0.088 0.912 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.067 0.933 47 H 0.021 0.979 48 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.030 -24.182 7.021 25.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.204 4.204 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.359 4.359 8 H 0.092 0.908 9 N -0.329 5.329 10 C 0.049 3.951 11 C -0.178 4.178 12 C -0.112 4.112 13 H 0.087 0.913 14 C -0.093 4.093 15 C -0.168 4.168 16 C -0.010 4.010 17 N -0.330 5.330 18 C 0.351 3.649 19 O -0.405 6.405 20 C -0.152 4.152 21 C -0.015 4.015 22 N -0.162 5.162 23 C -0.065 4.065 24 C 0.025 3.975 25 F -0.102 7.102 26 C -0.110 4.110 27 C -0.031 4.031 28 C -0.167 4.167 29 C 0.016 3.984 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.045 0.955 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.112 0.888 40 H 0.191 0.809 41 H 0.191 0.809 42 H 0.175 0.825 43 H 0.106 0.894 44 H 0.094 0.906 45 H 0.100 0.900 46 H 0.085 0.915 47 H 0.039 0.961 48 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -2.020 -24.789 6.125 25.615 hybrid contribution 0.644 1.662 0.842 1.971 sum -1.377 -23.128 6.966 24.193 Atomic orbital electron populations 1.69956 1.05017 1.25176 1.56262 1.24868 0.95595 0.97874 1.02016 0.86152 0.78789 0.83599 0.77527 1.21595 1.21628 1.20578 1.19001 0.90885 0.82854 1.43112 0.90841 1.44470 1.12212 1.00091 1.76135 1.21354 0.86400 0.90767 0.96565 1.23060 0.97728 0.98918 0.98123 1.22150 0.97380 0.93497 0.98127 0.91286 1.21147 0.95477 0.94422 0.98253 1.22012 1.00087 0.96151 0.98576 1.21758 0.88735 0.91793 0.98671 1.48078 1.28959 1.07443 1.48508 1.17955 0.85008 0.81826 0.80146 1.90826 1.39147 1.70936 1.39601 1.20915 0.98977 1.00618 0.94686 1.23022 0.89400 0.88692 1.00417 1.67854 1.12205 1.21579 1.14586 1.23190 0.99123 0.95766 0.88418 1.18632 0.97271 1.00402 0.81245 1.91570 1.87992 1.95226 1.35459 1.21948 0.95064 0.97759 0.96241 1.22181 0.91405 0.96150 0.93366 1.21913 0.98561 0.95230 1.01024 1.21311 0.94256 0.85930 0.96901 0.93741 0.92255 0.95495 0.92483 0.92326 0.90801 0.89790 0.91471 0.90994 0.88828 0.80930 0.80924 0.82453 0.89444 0.90561 0.89951 0.91466 0.96091 0.96406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.97 10.82 55.49 0.60 -26.37 16 2 C -0.01 -0.19 5.39 -17.43 -0.09 -0.28 16 3 Si 0.91 21.99 29.56 -169.99 -5.03 16.96 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.23 -6.41 10.22 -15.06 -0.15 -6.57 16 8 H 0.07 1.99 7.84 -52.49 -0.41 1.58 16 9 N -0.60 -15.26 3.39 -169.95 -0.58 -15.84 16 10 C 0.17 4.12 5.38 -2.41 -0.01 4.11 16 11 C -0.14 -2.41 5.50 -24.47 -0.13 -2.55 16 12 C -0.09 -1.46 2.48 -88.79 -0.22 -1.68 16 13 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 14 C -0.07 -0.87 1.53 -90.57 -0.14 -1.01 16 15 C -0.13 -1.42 5.20 -26.62 -0.14 -1.56 16 16 C 0.11 1.12 6.42 -3.71 -0.02 1.09 16 17 N -0.60 -5.73 2.98 -174.14 -0.52 -6.25 16 18 C 0.56 6.05 7.31 -12.33 -0.09 5.96 16 19 O -0.53 -7.35 16.43 5.32 0.09 -7.27 16 20 C -0.15 -1.28 5.18 -104.83 -0.54 -1.82 16 21 C 0.14 1.23 10.87 -17.14 -0.19 1.05 16 22 N -0.46 -3.92 10.34 -12.86 -0.13 -4.06 16 23 C 0.09 0.64 11.16 -17.39 -0.19 0.45 16 24 C 0.05 0.32 7.33 -39.33 -0.29 0.04 16 25 F -0.12 -0.92 17.28 2.25 0.04 -0.88 16 26 C -0.08 -0.60 7.45 -38.80 -0.29 -0.88 16 27 C 0.09 0.72 5.23 -3.93 -0.02 0.70 16 28 C -0.13 -1.23 5.17 -26.83 -0.14 -1.37 16 29 C 0.14 2.84 5.89 -3.07 -0.02 2.82 16 30 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.06 1.56 7.19 -51.93 -0.37 1.19 16 32 H 0.03 0.70 7.99 -51.93 -0.41 0.29 16 33 H 0.06 0.87 8.08 -51.93 -0.42 0.45 16 34 H 0.06 0.98 8.05 -51.93 -0.42 0.56 16 35 H 0.07 0.90 8.12 -51.93 -0.42 0.48 16 36 H 0.08 0.96 7.27 -51.93 -0.38 0.58 16 37 H 0.07 0.77 8.14 -51.92 -0.42 0.34 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.09 1.01 7.03 -51.93 -0.36 0.64 16 40 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 41 H 0.17 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.16 0.88 6.65 -52.48 -0.35 0.53 16 43 H 0.09 0.59 4.23 -51.93 -0.22 0.37 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.08 0.77 7.27 -51.93 -0.38 0.39 16 46 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.02 0.41 7.67 -51.93 -0.40 0.01 16 48 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 380.54 15.07 5.73 5.73 Total: -1.00 -32.67 380.54 -9.54 -42.22 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -7.06 Total: -2.75 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -2.69 Total: -1.51 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: -0.63 Total: -52.51 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: 0.09 Total: -7.27 kcal Atomic # 9 Polarization: -0.92 SS G_CDS: 0.04 Total: -0.88 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.67 -9.54 -42.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039125162.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.151 kcal (2) G-P(sol) polarization free energy of solvation -32.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds