Wall clock time and date at job start Wed Apr 1 2020 04:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99879 * 2 1 4 4 H 1.48498 * 109.47030 * 269.99974 * 3 2 1 5 5 H 1.48495 * 109.46949 * 29.99915 * 3 2 1 6 6 H 1.48493 * 109.47334 * 150.00044 * 3 2 1 7 7 C 1.38813 * 120.00158 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99948 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99913 * 359.97438 * 7 2 1 10 10 C 1.47022 * 125.64905 * 0.02562 * 9 7 2 11 11 C 1.54327 * 107.27067 * 178.89821 * 10 9 7 12 12 C 1.55151 * 102.94315 * 337.81492 * 11 10 9 13 13 H 1.09007 * 111.00388 * 277.38231 * 12 11 10 14 14 C 1.52997 * 111.00636 * 153.57623 * 12 11 10 15 15 H 1.09001 * 109.58774 * 187.04288 * 14 12 11 16 16 C 1.53194 * 109.58295 * 307.32052 * 14 12 11 17 17 C 1.53351 * 109.14928 * 174.43523 * 16 14 12 18 18 C 1.53044 * 109.61042 * 298.71787 * 17 16 14 19 19 C 1.53198 * 109.31258 * 61.37065 * 18 17 16 20 20 N 1.46921 * 108.77408 * 305.36693 * 19 18 17 21 21 C 1.34777 * 120.63255 * 233.63240 * 20 19 18 22 22 O 1.21551 * 120.00289 * 186.92621 * 21 20 19 23 23 C 1.47846 * 119.99753 * 6.91857 * 21 20 19 24 24 C 1.39565 * 120.54690 * 33.27162 * 23 21 20 25 25 N 1.31647 * 120.62498 * 180.02562 * 24 23 21 26 26 C 1.31941 * 121.90776 * 359.96987 * 25 24 23 27 27 C 1.38531 * 121.04686 * 359.97438 * 26 25 24 28 28 F 1.35097 * 120.37980 * 180.02562 * 27 26 25 29 29 C 1.38626 * 119.25079 * 359.78097 * 27 26 25 30 30 C 1.47470 * 125.62910 * 179.97438 * 9 7 2 31 31 H 0.96993 * 119.99937 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.87647 * 59.48949 * 10 9 7 33 33 H 1.08995 * 110.01356 * 298.39104 * 10 9 7 34 34 H 1.08995 * 110.72067 * 219.44420 * 11 10 9 35 35 H 1.08997 * 110.71701 * 96.17103 * 11 10 9 36 36 H 1.08996 * 109.50196 * 294.51490 * 16 14 12 37 37 H 1.08998 * 109.49659 * 54.62072 * 16 14 12 38 38 H 1.08994 * 109.42244 * 178.67656 * 17 16 14 39 39 H 1.08999 * 109.42326 * 58.75101 * 17 16 14 40 40 H 1.08996 * 109.49245 * 301.42140 * 18 17 16 41 41 H 1.08999 * 109.52663 * 181.33819 * 18 17 16 42 42 H 1.08996 * 109.58099 * 185.57903 * 19 18 17 43 43 H 1.08993 * 109.70012 * 65.22340 * 19 18 17 44 44 H 1.07999 * 119.68406 * 359.97438 * 24 23 21 45 45 H 1.08003 * 119.48060 * 180.02562 * 26 25 24 46 46 H 1.07999 * 120.86616 * 180.25457 * 29 27 26 47 47 H 1.09001 * 110.34511 * 85.32477 * 30 9 7 48 48 H 1.08999 * 110.40676 * 322.99505 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 -0.1374 -2.5328 0.0017 11 6 -0.4483 -4.0442 -0.0253 12 6 0.8520 -4.6561 -0.6099 13 1 0.8567 -4.5968 -1.6984 14 6 1.0371 -6.1008 -0.1417 15 1 2.0133 -6.4661 -0.4607 16 6 0.9402 -6.1618 1.3860 17 6 0.9874 -7.6274 1.8349 18 6 -0.2029 -8.3848 1.2419 19 6 -0.1175 -8.3456 -0.2872 20 7 -0.0176 -6.9449 -0.7194 21 6 -0.8773 -6.4436 -1.6283 22 8 -0.7090 -5.3244 -2.0716 23 6 -2.0252 -7.2552 -2.0862 24 6 -2.6556 -8.1464 -1.2167 25 7 -3.6775 -8.8702 -1.6229 26 6 -4.1459 -8.7866 -2.8536 27 6 -3.5769 -7.9254 -3.7776 28 9 -4.0677 -7.8502 -5.0340 29 6 -2.5015 -7.1378 -3.3970 30 6 1.9342 -3.7313 0.0017 31 1 -0.4850 0.8400 0.0004 32 1 -0.5575 -2.0521 -0.8819 33 1 -0.5566 -2.0841 0.9023 34 1 -1.2984 -4.2515 -0.6752 35 1 -0.6314 -4.4182 0.9820 36 1 1.7751 -5.6162 1.8256 37 1 0.0010 -5.7130 1.7091 38 1 0.9424 -7.6749 2.9229 39 1 1.9157 -8.0825 1.4896 40 1 -1.1313 -7.9150 1.5666 41 1 -0.1813 -9.4205 1.5809 42 1 -1.0128 -8.7969 -0.7148 43 1 0.7632 -8.8945 -0.6203 44 1 -2.3012 -8.2438 -0.2011 45 1 -4.9867 -9.3986 -3.1450 46 1 -2.0407 -6.4545 -4.0949 47 1 2.1672 -4.0417 1.0203 48 1 2.8337 -3.7411 -0.6138 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039197039.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:17 Heat of formation + Delta-G solvation = 32.079646 kcal Electronic energy + Delta-G solvation = -31927.344002 eV Core-core repulsion = 27706.427995 eV Total energy + Delta-G solvation = -4220.916007 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.34504 -41.42905 -39.90042 -37.57286 -36.89818 -33.65052 -32.89565 -32.70473 -31.53732 -30.59779 -28.82769 -27.52596 -25.88660 -24.62371 -24.38133 -23.89101 -22.90972 -21.29748 -20.34019 -19.82963 -19.01933 -17.84865 -17.66869 -17.53552 -16.76241 -16.28279 -16.14358 -15.71109 -15.23495 -15.04096 -14.75566 -14.47952 -14.21140 -14.09355 -14.08518 -13.82954 -13.59719 -13.34207 -13.29730 -12.85421 -12.55820 -12.27957 -12.12080 -11.82874 -11.53535 -11.30182 -11.11527 -10.95498 -10.76348 -10.64697 -10.58697 -10.31999 -10.29878 -10.03056 -9.96237 -9.69042 -9.63694 -9.50871 -9.31470 -8.83207 -8.49062 -8.37173 -6.65903 -5.58121 -2.90803 0.18375 0.57711 2.55552 2.74555 3.26516 3.46611 3.50903 3.53152 3.59056 3.90622 4.09672 4.29681 4.37381 4.52175 4.59670 4.66247 4.67715 4.79595 4.98367 5.10196 5.17081 5.20210 5.31559 5.37332 5.44068 5.49369 5.59919 5.61814 5.73140 5.77518 5.81707 5.94860 5.98881 6.06930 6.09573 6.14646 6.21063 6.40966 6.58546 6.62648 6.76988 6.89524 7.00987 7.25717 7.26866 7.36833 7.70325 7.86340 8.00760 8.15436 8.41058 9.35794 9.96869 10.64926 11.53108 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.012924 B = 0.003225 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.039229 B = 8680.798971 C =10301.686677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.010 4.010 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.225 4.225 8 H 0.075 0.925 9 N -0.603 5.603 10 C 0.183 3.817 11 C -0.139 4.139 12 C -0.103 4.103 13 H 0.112 0.888 14 C 0.162 3.838 15 H 0.072 0.928 16 C -0.140 4.140 17 C -0.119 4.119 18 C -0.137 4.137 19 C 0.082 3.918 20 N -0.598 5.598 21 C 0.550 3.450 22 O -0.484 6.484 23 C -0.146 4.146 24 C 0.108 3.892 25 N -0.458 5.458 26 C 0.089 3.911 27 C 0.046 3.954 28 F -0.125 7.125 29 C -0.057 4.057 30 C 0.135 3.865 31 H 0.250 0.750 32 H 0.042 0.958 33 H 0.034 0.966 34 H 0.071 0.929 35 H 0.047 0.953 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.097 0.903 43 H 0.072 0.928 44 H 0.180 0.820 45 H 0.172 0.828 46 H 0.159 0.841 47 H 0.016 0.984 48 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.935 -24.528 -1.659 25.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.206 4.206 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.354 4.354 8 H 0.093 0.907 9 N -0.329 5.329 10 C 0.058 3.942 11 C -0.176 4.176 12 C -0.122 4.122 13 H 0.129 0.871 14 C 0.060 3.940 15 H 0.090 0.910 16 C -0.177 4.177 17 C -0.156 4.156 18 C -0.175 4.175 19 C -0.041 4.041 20 N -0.331 5.331 21 C 0.336 3.664 22 O -0.359 6.359 23 C -0.151 4.151 24 C -0.049 4.049 25 N -0.166 5.166 26 C -0.069 4.069 27 C 0.024 3.976 28 F -0.104 7.104 29 C -0.084 4.084 30 C 0.009 3.991 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.089 0.911 35 H 0.066 0.934 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.114 0.886 43 H 0.090 0.910 44 H 0.196 0.804 45 H 0.189 0.811 46 H 0.177 0.823 47 H 0.034 0.966 48 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -5.298 -24.242 -1.352 24.851 hybrid contribution 0.714 1.472 -0.761 1.804 sum -4.584 -22.769 -2.113 23.322 Atomic orbital electron populations 1.70002 1.04827 1.24704 1.57321 1.24792 0.95672 0.97529 1.02638 0.86151 0.78529 0.83798 0.77496 1.21726 1.21785 1.20804 1.19059 0.90342 0.82636 1.43327 0.90666 1.44451 1.01888 0.99713 1.86874 1.21048 0.83963 0.88848 1.00295 1.23267 0.97209 0.98963 0.98195 1.22954 0.96899 0.89681 1.02667 0.87072 1.21277 0.88801 0.91345 0.92568 0.91046 1.22249 1.04294 0.96035 0.95169 1.21580 0.97776 0.95811 1.00477 1.21952 0.99913 1.01162 0.94522 1.22364 1.03606 0.82479 0.95663 1.47926 1.32053 1.11452 1.41707 1.17911 0.81906 0.86093 0.80451 1.90911 1.72251 1.17946 1.54801 1.21124 0.99490 0.99598 0.94895 1.23484 0.90570 0.90198 1.00683 1.67807 1.10963 1.22437 1.15375 1.23108 0.99301 0.96193 0.88347 1.18661 0.96705 1.00499 0.81693 1.91558 1.86621 1.95286 1.36932 1.21789 0.93762 0.96550 0.96330 1.21716 0.94353 0.86681 0.96394 0.93966 0.93989 0.94778 0.91063 0.93412 0.89773 0.90365 0.91612 0.91895 0.91238 0.90564 0.88565 0.90998 0.80351 0.81102 0.82309 0.96635 0.94992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.43 10.31 55.49 0.57 -27.86 16 2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 3 Si 0.91 22.95 29.55 -169.99 -5.02 17.93 16 4 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.23 -6.57 10.28 -15.06 -0.15 -6.73 16 8 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 9 N -0.60 -16.27 3.40 -170.02 -0.58 -16.85 16 10 C 0.18 4.81 5.37 -3.06 -0.02 4.79 16 11 C -0.14 -2.82 5.29 -24.90 -0.13 -2.96 16 12 C -0.10 -1.90 2.13 -88.46 -0.19 -2.08 16 13 H 0.11 2.32 5.86 -52.35 -0.31 2.01 16 14 C 0.16 2.19 2.80 -67.60 -0.19 2.00 16 15 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 16 C -0.14 -1.69 4.75 -26.45 -0.13 -1.81 16 17 C -0.12 -1.02 5.89 -26.53 -0.16 -1.18 16 18 C -0.14 -0.98 5.75 -26.61 -0.15 -1.13 16 19 C 0.08 0.64 5.53 -3.71 -0.02 0.62 16 20 N -0.60 -6.96 2.95 -166.33 -0.49 -7.45 16 21 C 0.55 7.47 6.56 -12.33 -0.08 7.39 16 22 O -0.48 -8.58 10.43 5.32 0.06 -8.52 16 23 C -0.15 -1.62 5.45 -104.83 -0.57 -2.19 16 24 C 0.11 1.02 8.59 -17.14 -0.15 0.87 16 25 N -0.46 -4.34 10.34 -12.86 -0.13 -4.48 16 26 C 0.09 0.74 11.16 -17.40 -0.19 0.55 16 27 C 0.05 0.44 7.33 -39.33 -0.29 0.15 16 28 F -0.13 -1.24 17.28 2.25 0.04 -1.20 16 29 C -0.06 -0.62 9.73 -38.80 -0.38 -0.99 16 30 C 0.14 2.90 6.61 -2.49 -0.02 2.88 16 31 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.04 1.25 7.38 -51.93 -0.38 0.86 16 33 H 0.03 0.98 7.51 -51.93 -0.39 0.59 16 34 H 0.07 1.48 5.56 -51.93 -0.29 1.19 16 35 H 0.05 0.90 5.47 -51.93 -0.28 0.62 16 36 H 0.08 1.09 6.43 -51.93 -0.33 0.76 16 37 H 0.08 1.07 5.72 -51.93 -0.30 0.77 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.52 7.60 -51.93 -0.39 0.13 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.10 0.67 3.58 -51.93 -0.19 0.49 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.18 1.38 5.00 -52.49 -0.26 1.12 16 45 H 0.17 0.94 8.06 -52.48 -0.42 0.52 16 46 H 0.16 1.71 8.03 -52.49 -0.42 1.29 16 47 H 0.02 0.33 5.98 -51.93 -0.31 0.02 16 48 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 361.46 15.07 5.45 5.45 Total: -1.00 -34.01 361.46 -9.38 -43.39 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -6.36 Total: -0.20 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -2.91 Total: -0.22 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: -0.63 Total: -56.63 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.06 Total: -8.52 kcal Atomic # 9 Polarization: -1.24 SS G_CDS: 0.04 Total: -1.20 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.01 -9.38 -43.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039197039.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.473 kcal (2) G-P(sol) polarization free energy of solvation -34.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds