Wall clock time and date at job start Wed Apr 1 2020 04:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99879 * 2 1 4 4 H 1.48498 * 109.47030 * 269.99974 * 3 2 1 5 5 H 1.48495 * 109.46949 * 29.99915 * 3 2 1 6 6 H 1.48493 * 109.47334 * 150.00044 * 3 2 1 7 7 C 1.38813 * 120.00158 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99948 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99913 * 359.97438 * 7 2 1 10 10 C 1.47022 * 125.64905 * 0.02562 * 9 7 2 11 11 C 1.54327 * 107.27067 * 178.89821 * 10 9 7 12 12 C 1.55151 * 102.94315 * 337.81492 * 11 10 9 13 13 H 1.09007 * 111.00388 * 277.38231 * 12 11 10 14 14 C 1.52997 * 111.00636 * 153.57623 * 12 11 10 15 15 H 1.09001 * 109.58774 * 187.04288 * 14 12 11 16 16 C 1.53194 * 109.58295 * 307.32052 * 14 12 11 17 17 C 1.53351 * 109.14928 * 174.43523 * 16 14 12 18 18 C 1.53044 * 109.61042 * 298.71787 * 17 16 14 19 19 C 1.53198 * 109.31258 * 61.37065 * 18 17 16 20 20 N 1.46921 * 108.77408 * 305.36693 * 19 18 17 21 21 C 1.34777 * 120.63255 * 233.63240 * 20 19 18 22 22 O 1.21551 * 120.00289 * 186.92621 * 21 20 19 23 23 C 1.47846 * 119.99753 * 6.91857 * 21 20 19 24 24 C 1.39565 * 120.54690 * 33.27162 * 23 21 20 25 25 N 1.31647 * 120.62498 * 180.02562 * 24 23 21 26 26 C 1.31941 * 121.90776 * 359.96987 * 25 24 23 27 27 C 1.38531 * 121.04686 * 359.97438 * 26 25 24 28 28 F 1.35097 * 120.37980 * 180.02562 * 27 26 25 29 29 C 1.38626 * 119.25079 * 359.78097 * 27 26 25 30 30 C 1.47470 * 125.62910 * 179.97438 * 9 7 2 31 31 H 0.96993 * 119.99937 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.87647 * 59.48949 * 10 9 7 33 33 H 1.08995 * 110.01356 * 298.39104 * 10 9 7 34 34 H 1.08995 * 110.72067 * 219.44420 * 11 10 9 35 35 H 1.08997 * 110.71701 * 96.17103 * 11 10 9 36 36 H 1.08996 * 109.50196 * 294.51490 * 16 14 12 37 37 H 1.08998 * 109.49659 * 54.62072 * 16 14 12 38 38 H 1.08994 * 109.42244 * 178.67656 * 17 16 14 39 39 H 1.08999 * 109.42326 * 58.75101 * 17 16 14 40 40 H 1.08996 * 109.49245 * 301.42140 * 18 17 16 41 41 H 1.08999 * 109.52663 * 181.33819 * 18 17 16 42 42 H 1.08996 * 109.58099 * 185.57903 * 19 18 17 43 43 H 1.08993 * 109.70012 * 65.22340 * 19 18 17 44 44 H 1.07999 * 119.68406 * 359.97438 * 24 23 21 45 45 H 1.08003 * 119.48060 * 180.02562 * 26 25 24 46 46 H 1.07999 * 120.86616 * 180.25457 * 29 27 26 47 47 H 1.09001 * 110.34511 * 85.32477 * 30 9 7 48 48 H 1.08999 * 110.40676 * 322.99505 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 -0.1374 -2.5328 0.0017 11 6 -0.4483 -4.0442 -0.0253 12 6 0.8520 -4.6561 -0.6099 13 1 0.8567 -4.5968 -1.6984 14 6 1.0371 -6.1008 -0.1417 15 1 2.0133 -6.4661 -0.4607 16 6 0.9402 -6.1618 1.3860 17 6 0.9874 -7.6274 1.8349 18 6 -0.2029 -8.3848 1.2419 19 6 -0.1175 -8.3456 -0.2872 20 7 -0.0176 -6.9449 -0.7194 21 6 -0.8773 -6.4436 -1.6283 22 8 -0.7090 -5.3244 -2.0716 23 6 -2.0252 -7.2552 -2.0862 24 6 -2.6556 -8.1464 -1.2167 25 7 -3.6775 -8.8702 -1.6229 26 6 -4.1459 -8.7866 -2.8536 27 6 -3.5769 -7.9254 -3.7776 28 9 -4.0677 -7.8502 -5.0340 29 6 -2.5015 -7.1378 -3.3970 30 6 1.9342 -3.7313 0.0017 31 1 -0.4850 0.8400 0.0004 32 1 -0.5575 -2.0521 -0.8819 33 1 -0.5566 -2.0841 0.9023 34 1 -1.2984 -4.2515 -0.6752 35 1 -0.6314 -4.4182 0.9820 36 1 1.7751 -5.6162 1.8256 37 1 0.0010 -5.7130 1.7091 38 1 0.9424 -7.6749 2.9229 39 1 1.9157 -8.0825 1.4896 40 1 -1.1313 -7.9150 1.5666 41 1 -0.1813 -9.4205 1.5809 42 1 -1.0128 -8.7969 -0.7148 43 1 0.7632 -8.8945 -0.6203 44 1 -2.3012 -8.2438 -0.2011 45 1 -4.9867 -9.3986 -3.1450 46 1 -2.0407 -6.4545 -4.0949 47 1 2.1672 -4.0417 1.0203 48 1 2.8337 -3.7411 -0.6138 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039197039.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:16 Heat of formation + Delta-G solvation = 10.524363 kcal Electronic energy + Delta-G solvation = -31928.278709 eV Core-core repulsion = 27706.427995 eV Total energy + Delta-G solvation = -4221.850714 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.10615 -42.39714 -40.83022 -38.82744 -38.28822 -35.13103 -34.02094 -33.57469 -32.88711 -31.68057 -30.65653 -29.00695 -27.13954 -26.13889 -25.40045 -24.67062 -24.13445 -22.20872 -22.04026 -21.26967 -20.11290 -19.00313 -18.62455 -18.41113 -18.26632 -17.18339 -16.98025 -16.88981 -16.71352 -16.60481 -16.01590 -15.70531 -15.37164 -15.05571 -15.00711 -14.85113 -14.60854 -14.43023 -14.27499 -14.05298 -13.91135 -13.82316 -13.46414 -13.26298 -12.93298 -12.84213 -12.71026 -12.27359 -12.08396 -12.04265 -11.83307 -11.71617 -11.58897 -11.47673 -11.30512 -11.22971 -11.09608 -10.97118 -10.68633 -10.18030 -9.94176 -9.50043 -8.85555 -7.83916 -5.20072 -0.59056 -0.20598 1.42003 1.45804 1.54307 1.60999 1.80723 2.45559 2.49144 2.84399 3.15496 3.29964 3.34269 3.56221 3.61332 3.67068 3.78452 3.87083 3.94010 3.99862 4.10371 4.16825 4.27590 4.35009 4.38427 4.42941 4.56172 4.63017 4.67050 4.69696 4.72333 4.78866 4.91686 4.94976 5.03694 5.15580 5.16689 5.23698 5.30587 5.32155 5.35748 5.44531 5.51331 5.57229 5.67815 5.76292 5.84153 6.19645 6.36601 6.52799 7.09752 7.12099 7.79249 8.45938 9.26594 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.012924 B = 0.003225 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.039229 B = 8680.798971 C =10301.686677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.073 4.073 3 Si 0.982 3.018 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.264 1.264 7 C -0.243 4.243 8 H 0.084 0.916 9 N -0.627 5.627 10 C 0.195 3.805 11 C -0.117 4.117 12 C -0.084 4.084 13 H 0.086 0.914 14 C 0.169 3.831 15 H 0.089 0.911 16 C -0.136 4.136 17 C -0.113 4.113 18 C -0.134 4.134 19 C 0.078 3.922 20 N -0.592 5.592 21 C 0.547 3.453 22 O -0.540 6.540 23 C -0.159 4.159 24 C 0.121 3.879 25 N -0.464 5.464 26 C 0.104 3.896 27 C 0.042 3.958 28 F -0.128 7.128 29 C -0.067 4.067 30 C 0.130 3.870 31 H 0.244 0.756 32 H -0.008 1.008 33 H -0.002 1.002 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.091 0.909 44 H 0.199 0.801 45 H 0.205 0.795 46 H 0.147 0.853 47 H 0.036 0.964 48 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.438 -28.094 -0.560 28.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.265 4.265 3 Si 0.810 3.190 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.189 1.189 7 C -0.372 4.372 8 H 0.102 0.898 9 N -0.353 5.353 10 C 0.070 3.930 11 C -0.154 4.154 12 C -0.103 4.103 13 H 0.104 0.896 14 C 0.066 3.934 15 H 0.107 0.893 16 C -0.174 4.174 17 C -0.150 4.150 18 C -0.172 4.172 19 C -0.043 4.043 20 N -0.324 5.324 21 C 0.335 3.665 22 O -0.419 6.419 23 C -0.164 4.164 24 C -0.036 4.036 25 N -0.171 5.171 26 C -0.054 4.054 27 C 0.020 3.980 28 F -0.107 7.107 29 C -0.094 4.094 30 C 0.005 3.995 31 H 0.053 0.947 32 H 0.010 0.990 33 H 0.016 0.984 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.109 0.891 44 H 0.215 0.785 45 H 0.221 0.779 46 H 0.165 0.835 47 H 0.054 0.946 48 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -4.769 -27.889 -0.230 28.295 hybrid contribution 0.542 2.514 -1.145 2.815 sum -4.226 -25.375 -1.375 25.761 Atomic orbital electron populations 1.70265 1.06565 1.25046 1.58557 1.25752 0.96623 1.01337 1.02829 0.85018 0.77719 0.78812 0.77435 1.21444 1.22003 1.18873 1.19535 0.91058 0.83900 1.42672 0.89802 1.44792 1.02331 1.01350 1.86790 1.20743 0.83867 0.92259 0.96157 1.23046 0.98298 0.94710 0.99395 1.22688 0.94087 0.92680 1.00891 0.89603 1.21099 0.90227 0.88279 0.93756 0.89300 1.22188 1.02814 0.98892 0.93543 1.21555 0.99227 0.92982 1.01246 1.21979 0.99030 1.02810 0.93342 1.22672 1.05154 0.79914 0.96546 1.48000 1.30794 1.12868 1.40774 1.18312 0.82454 0.85636 0.80054 1.90894 1.73710 1.20353 1.56910 1.20892 0.99457 1.00655 0.95408 1.23712 0.89964 0.88994 1.00966 1.67937 1.10923 1.22532 1.15704 1.23616 0.99149 0.95119 0.87489 1.18690 0.96577 1.00801 0.81917 1.91552 1.86596 1.95349 1.37202 1.21815 0.94418 0.96791 0.96417 1.21962 0.95095 0.84844 0.97637 0.94655 0.98958 0.98426 0.91424 0.91591 0.90760 0.92186 0.90541 0.90477 0.91528 0.87337 0.87386 0.89095 0.78468 0.77857 0.83471 0.94614 0.94801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.20 10.31 21.65 0.22 -61.97 16 2 C -0.07 -4.46 5.49 84.86 0.47 -4.00 16 3 Si 0.98 48.47 29.55 68.60 2.03 50.50 16 4 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 5 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 6 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.24 -14.61 10.28 84.03 0.86 -13.75 16 8 H 0.08 4.76 7.83 -2.91 -0.02 4.74 16 9 N -0.63 -35.28 3.40 -691.83 -2.35 -37.63 16 10 C 0.20 10.96 5.37 86.73 0.47 11.43 16 11 C -0.12 -4.98 5.29 31.78 0.17 -4.81 16 12 C -0.08 -3.18 2.13 -9.40 -0.02 -3.20 16 13 H 0.09 3.76 5.86 -9.12 -0.05 3.71 16 14 C 0.17 4.32 2.80 44.97 0.13 4.45 16 15 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 16 C -0.14 -3.01 4.75 30.78 0.15 -2.87 16 17 C -0.11 -1.48 5.89 30.73 0.18 -1.30 16 18 C -0.13 -1.29 5.75 30.68 0.18 -1.12 16 19 C 0.08 0.93 5.53 86.37 0.48 1.41 16 20 N -0.59 -12.77 2.95 -798.42 -2.36 -15.13 16 21 C 0.55 14.85 6.56 86.79 0.57 15.42 16 22 O -0.54 -20.15 10.43 -3.88 -0.04 -20.19 16 23 C -0.16 -3.40 5.45 -20.00 -0.11 -3.51 16 24 C 0.12 1.97 8.59 85.04 0.73 2.70 16 25 N -0.46 -7.37 10.34 -194.60 -2.01 -9.38 16 26 C 0.10 1.46 11.16 84.75 0.95 2.41 16 27 C 0.04 0.74 7.33 22.43 0.16 0.91 16 28 F -0.13 -2.41 17.28 44.97 0.78 -1.64 16 29 C -0.07 -1.45 9.73 22.78 0.22 -1.23 16 30 C 0.13 5.65 6.61 86.85 0.57 6.22 16 31 H 0.24 15.41 8.31 -92.71 -0.77 14.64 16 32 H -0.01 -0.51 7.38 -2.38 -0.02 -0.53 16 33 H 0.00 -0.15 7.51 -2.39 -0.02 -0.17 16 34 H 0.07 2.98 5.56 -2.39 -0.01 2.96 16 35 H 0.07 2.55 5.47 -2.39 -0.01 2.54 16 36 H 0.07 1.79 6.43 -2.39 -0.02 1.77 16 37 H 0.06 1.55 5.72 -2.39 -0.01 1.54 16 38 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 0.73 7.60 -2.39 -0.02 0.71 16 41 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.11 1.09 3.58 -2.39 -0.01 1.08 16 43 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.20 2.37 5.00 -2.91 -0.01 2.35 16 45 H 0.20 1.45 8.06 -2.91 -0.02 1.43 16 46 H 0.15 3.43 8.03 -2.91 -0.02 3.40 16 47 H 0.04 1.44 5.98 -2.39 -0.01 1.43 16 48 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -80.06 361.46 3.38 -76.68 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: 0.96 Total: 9.59 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: 6.15 Total: 9.16 kcal Atomic # 7 Polarization: -117.62 SS G_CDS: -6.50 Total: -124.11 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.04 Total: -20.19 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.78 Total: -1.64 kcal Atomic # 14 Polarization: 48.47 SS G_CDS: 2.03 Total: 50.50 kcal Total: -80.06 3.38 -76.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039197039.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.208 kcal (2) G-P(sol) polarization free energy of solvation -80.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds