Wall clock time and date at job start Wed Apr 1 2020 04:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00167 * 2 1 4 4 H 1.48500 * 109.47156 * 267.36060 * 3 2 1 5 5 H 1.48504 * 109.46900 * 27.36033 * 3 2 1 6 6 H 1.48502 * 109.47158 * 147.35533 * 3 2 1 7 7 C 1.38811 * 119.99764 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00080 * 346.87756 * 7 2 1 9 9 N 1.36933 * 119.99900 * 166.87909 * 7 2 1 10 10 C 1.47427 * 125.65195 * 151.71092 * 9 7 2 11 11 C 1.54902 * 104.83767 * 155.82553 * 10 9 7 12 12 C 1.55162 * 101.58236 * 37.00727 * 11 10 9 13 13 H 1.08996 * 110.72003 * 82.86210 * 12 11 10 14 14 C 1.52996 * 110.72257 * 206.13604 * 12 11 10 15 15 H 1.09005 * 109.58601 * 37.65046 * 14 12 11 16 16 C 1.53188 * 109.58698 * 157.92851 * 14 12 11 17 17 C 1.53040 * 109.31284 * 174.42198 * 16 14 12 18 18 C 1.53041 * 109.54065 * 298.63598 * 17 16 14 19 19 C 1.53191 * 109.31124 * 61.36488 * 18 17 16 20 20 N 1.46924 * 108.77508 * 305.36514 * 19 18 17 21 21 C 1.34771 * 120.63452 * 233.58816 * 20 19 18 22 22 O 1.21531 * 120.00484 * 186.19281 * 21 20 19 23 23 C 1.48053 * 119.99863 * 6.18914 * 21 20 19 24 24 C 1.39380 * 119.69703 * 204.68633 * 23 21 20 25 25 C 1.38459 * 119.09388 * 179.97438 * 24 23 21 26 26 C 1.38900 * 118.47398 * 0.02562 * 25 24 23 27 27 F 1.35096 * 120.35487 * 180.02562 * 26 25 24 28 28 C 1.38875 * 119.29315 * 359.97438 * 26 25 24 29 29 N 1.31460 * 120.86075 * 359.74843 * 28 26 25 30 30 C 1.47024 * 125.64954 * 331.65451 * 9 7 2 31 31 H 0.97002 * 119.99646 * 359.97438 * 1 2 3 32 32 H 1.09000 * 110.36878 * 36.98126 * 10 9 7 33 33 H 1.09004 * 110.45542 * 274.70989 * 10 9 7 34 34 H 1.09003 * 111.00326 * 278.93742 * 11 10 9 35 35 H 1.08997 * 111.01007 * 155.07923 * 11 10 9 36 36 H 1.08998 * 109.49930 * 294.37282 * 16 14 12 37 37 H 1.08995 * 109.49779 * 54.44321 * 16 14 12 38 38 H 1.09000 * 109.45970 * 58.66185 * 17 16 14 39 39 H 1.09009 * 109.46316 * 178.62349 * 17 16 14 40 40 H 1.09004 * 109.49824 * 181.31650 * 18 17 16 41 41 H 1.08997 * 109.49518 * 301.38336 * 18 17 16 42 42 H 1.08999 * 109.58703 * 65.14927 * 19 18 17 43 43 H 1.08993 * 109.58783 * 185.58037 * 19 18 17 44 44 H 1.08000 * 120.45012 * 359.96175 * 24 23 21 45 45 H 1.08004 * 120.76564 * 179.97438 * 25 24 23 46 46 H 1.07999 * 119.57021 * 180.02562 * 28 26 25 47 47 H 1.08998 * 109.88371 * 61.68878 * 30 9 7 48 48 H 1.09004 * 109.88191 * 300.52460 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.5536 2.0142 -1.3986 5 1 1.4209 2.6681 0.6435 6 1 3.5188 1.4569 0.7552 7 6 2.0102 -1.2022 -0.0005 8 1 1.4914 -2.1253 0.2114 9 7 3.3527 -1.2176 -0.2697 10 6 4.3187 -2.2111 0.2335 11 6 5.4819 -2.1867 -0.7891 12 6 5.5506 -0.6785 -1.1470 13 1 6.1306 -0.1318 -0.4036 14 6 6.1371 -0.4802 -2.5461 15 1 5.7805 -1.2702 -3.2071 16 6 5.7052 0.8829 -3.0956 17 6 6.4059 1.1348 -4.4326 18 6 7.9213 1.1578 -4.2200 19 6 8.3783 -0.2023 -3.6833 20 7 7.6042 -0.5183 -2.4752 21 6 8.2279 -0.8374 -1.3239 22 8 7.5802 -1.2057 -0.3637 23 6 9.7021 -0.7393 -1.2288 24 6 10.3870 -1.5157 -0.2957 25 6 11.7657 -1.4145 -0.2178 26 6 12.4149 -0.5377 -1.0775 27 9 13.7591 -0.4093 -1.0345 28 6 11.6676 0.2048 -1.9824 29 7 10.3598 0.0834 -2.0369 30 6 4.0695 -0.2467 -1.1095 31 1 -0.4850 0.8401 0.0004 32 1 3.8629 -3.2007 0.2662 33 1 4.6773 -1.9266 1.2228 34 1 5.2425 -2.7861 -1.6675 35 1 6.4123 -2.5222 -0.3308 36 1 4.6253 0.8899 -3.2438 37 1 5.9803 1.6644 -2.3873 38 1 6.1494 0.3395 -5.1325 39 1 6.0815 2.0934 -4.8377 40 1 8.4187 1.3605 -5.1685 41 1 8.1760 1.9371 -3.5018 42 1 8.2066 -0.9694 -4.4383 43 1 9.4391 -0.1601 -3.4369 44 1 9.8496 -2.1870 0.3578 45 1 12.3234 -2.0032 0.4955 46 1 12.1679 0.8876 -2.6532 47 1 3.9850 0.7506 -0.6778 48 1 3.6560 -0.2525 -2.1181 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039199164.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:25 Heat of formation + Delta-G solvation = 34.544564 kcal Electronic energy + Delta-G solvation = -31949.201626 eV Core-core repulsion = 27728.392506 eV Total energy + Delta-G solvation = -4220.809120 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.54191 -41.37574 -39.93936 -37.54976 -37.11058 -33.61212 -32.92157 -32.67854 -31.65038 -31.08645 -29.34180 -27.63550 -25.89577 -24.53980 -24.34361 -24.04019 -22.80455 -21.42936 -20.22968 -19.81177 -19.66770 -18.19942 -17.80777 -17.44193 -16.85513 -16.43647 -16.08417 -16.07045 -15.14927 -15.09981 -14.80440 -14.58209 -14.40392 -14.19579 -14.00220 -13.77995 -13.64302 -13.37700 -13.18342 -12.92010 -12.81784 -12.63754 -12.29634 -12.24390 -11.62488 -11.39780 -11.17541 -11.08564 -10.89020 -10.78808 -10.76716 -10.49293 -10.44602 -10.04822 -9.93037 -9.75324 -9.63091 -9.34868 -9.18800 -8.94462 -8.55602 -8.44317 -6.75076 -5.84398 -3.21799 0.05758 0.50405 2.36351 2.79750 3.21956 3.40212 3.42549 3.52805 3.58253 3.72893 4.13022 4.16939 4.29268 4.62542 4.67195 4.82116 4.83608 4.90187 5.03534 5.13703 5.15616 5.28637 5.31032 5.33653 5.42651 5.45918 5.54624 5.62014 5.76444 5.81142 5.83473 5.91991 5.99039 6.01325 6.07559 6.12787 6.18975 6.29212 6.40155 6.41819 6.61604 6.67896 6.81678 6.88351 7.04297 7.06967 7.17885 7.37537 7.98445 8.14579 8.44970 8.98030 9.80639 10.37488 11.33130 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.016687 B = 0.003213 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.598211 B = 8712.893708 C = 9577.906907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.020 3.980 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.307 1.307 6 H -0.274 1.274 7 C -0.236 4.236 8 H 0.088 0.912 9 N -0.612 5.612 10 C 0.133 3.867 11 C -0.118 4.118 12 C -0.093 4.093 13 H 0.099 0.901 14 C 0.159 3.841 15 H 0.076 0.924 16 C -0.137 4.137 17 C -0.122 4.122 18 C -0.126 4.126 19 C 0.079 3.921 20 N -0.584 5.584 21 C 0.556 3.444 22 O -0.496 6.496 23 C 0.077 3.923 24 C -0.084 4.084 25 C -0.113 4.113 26 C 0.065 3.935 27 F -0.126 7.126 28 C 0.069 3.931 29 N -0.422 5.422 30 C 0.116 3.884 31 H 0.262 0.738 32 H 0.041 0.959 33 H 0.022 0.978 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.131 0.869 44 H 0.160 0.840 45 H 0.155 0.845 46 H 0.174 0.826 47 H 0.025 0.975 48 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.462 -0.525 -8.370 29.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.178 4.178 3 Si 0.734 3.266 4 H -0.215 1.215 5 H -0.236 1.236 6 H -0.201 1.201 7 C -0.364 4.364 8 H 0.105 0.895 9 N -0.340 5.340 10 C 0.008 3.992 11 C -0.156 4.156 12 C -0.112 4.112 13 H 0.117 0.883 14 C 0.057 3.943 15 H 0.094 0.906 16 C -0.175 4.175 17 C -0.159 4.159 18 C -0.165 4.165 19 C -0.044 4.044 20 N -0.316 5.316 21 C 0.342 3.658 22 O -0.372 6.372 23 C -0.061 4.061 24 C -0.105 4.105 25 C -0.139 4.139 26 C 0.043 3.957 27 F -0.105 7.105 28 C -0.092 4.092 29 N -0.134 5.134 30 C -0.009 4.009 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.040 0.960 34 H 0.069 0.931 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.148 0.852 44 H 0.177 0.823 45 H 0.173 0.827 46 H 0.191 0.809 47 H 0.042 0.958 48 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 27.388 -0.158 -8.429 28.656 hybrid contribution 1.126 0.701 0.453 1.402 sum 28.514 0.543 -7.976 29.614 Atomic orbital electron populations 1.69765 1.05516 1.26362 1.54671 1.25207 0.95262 0.97629 0.99725 0.86707 0.78388 0.83970 0.77566 1.21513 1.23552 1.20069 1.18690 0.80521 0.94225 1.42949 0.89466 1.44740 1.04365 1.30413 1.54437 1.21639 0.89417 0.93214 0.94944 1.23146 0.99072 0.94479 0.98894 1.22559 0.95355 0.98847 0.94413 0.88271 1.21392 0.77357 0.97323 0.98210 0.90586 1.22098 1.01505 0.96971 0.96891 1.21571 0.95095 1.01910 0.97358 1.21809 0.96056 0.97543 1.01043 1.22623 0.99646 0.96145 0.85961 1.47915 1.06918 1.66712 1.10021 1.17843 0.84929 0.79000 0.84020 1.90884 1.63343 1.44863 1.38067 1.21591 0.95399 0.95082 0.94042 1.22064 0.93217 0.98103 0.97071 1.21713 0.94971 0.98233 0.98974 1.19035 0.78308 0.99317 0.99043 1.91552 1.28748 1.94650 1.95509 1.23082 0.89770 0.98573 0.97741 1.67664 1.08104 1.17034 1.20584 1.21925 0.90600 0.93614 0.94738 0.92852 0.94093 0.95963 0.93112 0.88901 0.89738 0.91491 0.91855 0.91755 0.91182 0.91405 0.92440 0.85203 0.82275 0.82712 0.80853 0.95783 0.94770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.46 13.97 55.49 0.78 -28.68 16 2 C 0.02 0.61 5.48 -17.43 -0.10 0.51 16 3 Si 0.90 24.23 24.45 -169.99 -4.16 20.07 16 4 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 5 H -0.31 -8.29 7.11 56.52 0.40 -7.89 16 6 H -0.27 -7.36 6.50 56.52 0.37 -6.99 16 7 C -0.24 -7.09 10.60 -15.06 -0.16 -7.25 16 8 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 9 N -0.61 -16.00 3.11 -170.07 -0.53 -16.53 16 10 C 0.13 2.95 7.23 -2.53 -0.02 2.93 16 11 C -0.12 -2.19 5.78 -24.58 -0.14 -2.33 16 12 C -0.09 -1.74 1.92 -88.78 -0.17 -1.92 16 13 H 0.10 2.01 5.92 -51.94 -0.31 1.71 16 14 C 0.16 2.40 2.61 -67.60 -0.18 2.23 16 15 H 0.08 1.14 7.76 -51.93 -0.40 0.73 16 16 C -0.14 -1.96 4.71 -26.61 -0.13 -2.09 16 17 C -0.12 -1.33 5.88 -26.69 -0.16 -1.49 16 18 C -0.13 -1.20 6.08 -26.61 -0.16 -1.36 16 19 C 0.08 0.78 6.12 -3.71 -0.02 0.76 16 20 N -0.58 -7.52 2.97 -166.25 -0.49 -8.01 16 21 C 0.56 7.47 7.31 -12.24 -0.09 7.38 16 22 O -0.50 -7.94 9.53 5.34 0.05 -7.89 16 23 C 0.08 0.81 6.36 -83.02 -0.53 0.28 16 24 C -0.08 -0.71 9.62 -39.07 -0.38 -1.09 16 25 C -0.11 -0.74 10.15 -39.25 -0.40 -1.14 16 26 C 0.06 0.45 7.36 -39.10 -0.29 0.16 16 27 F -0.13 -0.91 17.28 2.25 0.04 -0.87 16 28 C 0.07 0.48 11.17 -17.47 -0.20 0.28 16 29 N -0.42 -3.88 6.60 -9.74 -0.06 -3.94 16 30 C 0.12 2.69 4.10 -3.06 -0.01 2.68 16 31 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 32 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.91 7.79 -51.93 -0.40 0.50 16 35 H 0.09 1.63 5.48 -52.46 -0.29 1.34 16 36 H 0.08 1.35 6.46 -51.93 -0.34 1.01 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.13 1.20 3.96 -72.14 -0.29 0.91 16 44 H 0.16 1.25 7.83 -52.49 -0.41 0.84 16 45 H 0.16 0.64 8.06 -52.48 -0.42 0.22 16 46 H 0.17 0.72 8.06 -52.49 -0.42 0.30 16 47 H 0.02 0.62 3.02 -51.93 -0.16 0.46 16 48 H 0.03 0.80 6.49 -51.93 -0.34 0.46 16 LS Contribution 363.47 15.07 5.48 5.48 Total: -1.00 -34.37 363.47 -8.77 -43.14 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -6.75 Total: -1.31 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -3.12 Total: -1.45 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: -0.31 Total: -57.17 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: 0.05 Total: -7.89 kcal Atomic # 9 Polarization: -0.91 SS G_CDS: 0.04 Total: -0.87 kcal Atomic # 14 Polarization: 24.23 SS G_CDS: -4.16 Total: 20.07 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.37 -8.77 -43.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039199164.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.685 kcal (2) G-P(sol) polarization free energy of solvation -34.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds