Wall clock time and date at job start Wed Apr 1 2020 04:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00414 * 2 1 4 4 H 1.48495 * 109.47234 * 239.99823 * 3 2 1 5 5 H 1.48510 * 109.46758 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47351 * 119.99378 * 3 2 1 7 7 C 1.38817 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99931 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99924 * 0.02562 * 7 2 1 10 10 C 1.47021 * 125.64841 * 359.96060 * 9 7 2 11 11 C 1.54331 * 107.27077 * 181.09458 * 10 9 7 12 12 C 1.55148 * 102.94136 * 22.18850 * 11 10 9 13 13 H 1.09001 * 111.03811 * 82.58777 * 12 11 10 14 14 C 1.53000 * 111.00566 * 206.42284 * 12 11 10 15 15 H 1.08999 * 109.59097 * 166.39360 * 14 12 11 16 16 C 1.53197 * 109.58306 * 45.96780 * 14 12 11 17 17 C 1.53044 * 109.31254 * 185.57615 * 16 14 12 18 18 C 1.53037 * 109.53775 * 61.36858 * 17 16 14 19 19 C 1.53197 * 109.31208 * 298.63510 * 18 17 16 20 20 N 1.46928 * 109.58760 * 286.68517 * 14 12 11 21 21 C 1.34773 * 120.62949 * 353.36809 * 20 14 12 22 22 O 1.21564 * 120.00093 * 5.91101 * 21 20 14 23 23 C 1.47726 * 120.00073 * 185.91320 * 21 20 14 24 24 C 1.40154 * 120.53342 * 208.14174 * 23 21 20 25 25 C 1.38155 * 118.32420 * 180.02562 * 24 23 21 26 26 C 1.38751 * 119.28311 * 0.02562 * 25 24 23 27 27 F 1.35102 * 119.48731 * 179.97438 * 26 25 24 28 28 N 1.32146 * 121.01683 * 359.97438 * 26 25 24 29 29 C 1.31685 * 121.84237 * 359.71146 * 28 26 25 30 30 C 1.47428 * 125.64955 * 179.97438 * 9 7 2 31 31 H 0.96996 * 119.99687 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.88067 * 300.50876 * 10 9 7 33 33 H 1.08991 * 109.88693 * 61.52158 * 10 9 7 34 34 H 1.08998 * 110.71560 * 263.82257 * 11 10 9 35 35 H 1.09004 * 110.71930 * 140.55723 * 11 10 9 36 36 H 1.08995 * 109.49912 * 305.53307 * 16 14 12 37 37 H 1.09002 * 109.49472 * 65.63250 * 16 14 12 38 38 H 1.08998 * 109.45918 * 301.34799 * 17 16 14 39 39 H 1.08999 * 109.46093 * 181.38639 * 17 16 14 40 40 H 1.08995 * 109.50353 * 178.68089 * 18 17 16 41 41 H 1.09001 * 109.52362 * 58.59542 * 18 17 16 42 42 H 1.09000 * 109.58712 * 294.84545 * 19 18 17 43 43 H 1.09005 * 109.70307 * 174.48891 * 19 18 17 44 44 H 1.07999 * 120.83431 * 359.97438 * 24 23 21 45 45 H 1.07999 * 120.35614 * 179.97438 * 25 24 23 46 46 H 1.07996 * 119.70799 * 180.30785 * 29 28 26 47 47 H 1.08998 * 110.36241 * 37.00022 * 30 9 7 48 48 H 1.08998 * 110.45865 * 274.72628 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6962 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1375 -2.5327 0.0008 11 6 -0.4485 -4.0441 0.0289 12 6 0.8519 -4.6556 0.6137 13 1 0.8575 -4.5955 1.7021 14 6 1.0369 -6.1007 0.1464 15 1 2.0541 -6.4273 0.3623 16 6 0.7744 -6.1907 -1.3602 17 6 0.8240 -7.6570 -1.7959 18 6 -0.2675 -8.4446 -1.0676 19 6 -0.0169 -8.3801 0.4423 20 7 0.0813 -6.9707 0.8456 21 6 -0.6901 -6.4851 1.8384 22 8 -0.6779 -5.2962 2.0915 23 6 -1.5503 -7.3977 2.6191 24 6 -2.7349 -6.9319 3.2056 25 6 -3.5046 -7.8246 3.9263 26 6 -3.0838 -9.1414 4.0457 27 9 -3.8330 -10.0177 4.7500 28 7 -1.9616 -9.5515 3.4812 29 6 -1.1991 -8.7384 2.7801 30 6 1.9334 -3.7312 0.0005 31 1 -0.4849 0.8400 -0.0004 32 1 -0.5574 -2.0514 0.8841 33 1 -0.5548 -2.0828 -0.8999 34 1 -0.6320 -4.4187 -0.9781 35 1 -1.2985 -4.2510 0.6792 36 1 -0.2094 -5.7780 -1.5834 37 1 1.5368 -5.6259 -1.8967 38 1 1.7997 -8.0761 -1.5499 39 1 0.6620 -7.7218 -2.8718 40 1 -0.2468 -9.4838 -1.3958 41 1 -1.2417 -8.0110 -1.2935 42 1 0.9144 -8.8941 0.6804 43 1 -0.8424 -8.8552 0.9725 44 1 -3.0379 -5.9010 3.0976 45 1 -4.4234 -7.5008 4.3924 46 1 -0.2913 -9.1115 2.3294 47 1 2.8333 -3.7403 0.6155 48 1 2.1671 -4.0436 -1.0172 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039207511.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:34 Heat of formation + Delta-G solvation = 40.795718 kcal Electronic energy + Delta-G solvation = -31762.560331 eV Core-core repulsion = 27542.022281 eV Total energy + Delta-G solvation = -4220.538050 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.42125 -41.40830 -39.88719 -37.52912 -36.89376 -33.63451 -33.17442 -32.82313 -31.48589 -30.57123 -28.80067 -27.53147 -25.76017 -24.73012 -24.23952 -24.08336 -22.86129 -21.26125 -20.37529 -19.87470 -18.89335 -18.42643 -17.76507 -17.11059 -16.72029 -16.49857 -15.72611 -15.44910 -15.37116 -15.10452 -14.73657 -14.41500 -14.39292 -14.13272 -13.81207 -13.62537 -13.51902 -13.47928 -13.18484 -13.03690 -12.70147 -12.32729 -12.17755 -11.77720 -11.57692 -11.29945 -11.08404 -10.94518 -10.74757 -10.63359 -10.59274 -10.43414 -10.23241 -10.01492 -9.98113 -9.68558 -9.63702 -9.49599 -9.24512 -8.90627 -8.43436 -8.34056 -6.65653 -5.57926 -2.90470 0.16307 0.64608 2.55830 2.78047 3.07849 3.31157 3.46892 3.50588 3.52173 3.98862 4.15988 4.33857 4.43411 4.52960 4.60120 4.69500 4.79421 4.89686 4.99535 5.08796 5.15651 5.18795 5.33202 5.44965 5.47253 5.55784 5.59779 5.60731 5.75419 5.79813 5.84651 5.95756 6.01425 6.06622 6.10677 6.17499 6.22841 6.41763 6.60096 6.64030 6.77980 6.92680 7.03533 7.08513 7.29617 7.37122 7.70304 7.87872 8.01377 8.19429 8.41750 9.36181 9.97253 10.65457 11.53171 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.014863 B = 0.002965 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.431730 B = 9441.815624 C =10851.141269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.010 4.010 3 Si 0.910 3.090 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.225 4.225 8 H 0.075 0.925 9 N -0.603 5.603 10 C 0.182 3.818 11 C -0.135 4.135 12 C -0.101 4.101 13 H 0.111 0.889 14 C 0.162 3.838 15 H 0.072 0.928 16 C -0.140 4.140 17 C -0.120 4.120 18 C -0.134 4.134 19 C 0.083 3.917 20 N -0.599 5.599 21 C 0.549 3.451 22 O -0.485 6.485 23 C -0.188 4.188 24 C 0.008 3.992 25 C -0.197 4.197 26 C 0.321 3.679 27 F -0.110 7.110 28 N -0.517 5.517 29 C 0.152 3.848 30 C 0.135 3.865 31 H 0.250 0.750 32 H 0.042 0.958 33 H 0.034 0.966 34 H 0.049 0.951 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.096 0.904 44 H 0.160 0.840 45 H 0.156 0.844 46 H 0.185 0.815 47 H 0.031 0.969 48 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.972 -23.074 2.360 23.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.206 4.206 3 Si 0.740 3.260 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.354 4.354 8 H 0.092 0.908 9 N -0.329 5.329 10 C 0.057 3.943 11 C -0.172 4.172 12 C -0.120 4.120 13 H 0.129 0.871 14 C 0.060 3.940 15 H 0.090 0.910 16 C -0.178 4.178 17 C -0.158 4.158 18 C -0.172 4.172 19 C -0.040 4.040 20 N -0.333 5.333 21 C 0.336 3.664 22 O -0.360 6.360 23 C -0.194 4.194 24 C -0.018 4.018 25 C -0.218 4.218 26 C 0.168 3.832 27 F -0.089 7.089 28 N -0.232 5.232 29 C -0.006 4.006 30 C 0.008 3.992 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.113 0.887 44 H 0.177 0.823 45 H 0.173 0.827 46 H 0.202 0.798 47 H 0.049 0.951 48 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -4.819 -23.073 2.637 23.718 hybrid contribution 0.048 1.410 -0.028 1.411 sum -4.771 -21.663 2.609 22.335 Atomic orbital electron populations 1.69992 1.04808 1.24790 1.57287 1.24787 0.95680 0.97508 1.02655 0.86234 0.78429 0.83513 0.77788 1.21323 1.21696 1.21289 1.19013 0.90305 0.82666 1.43391 0.90754 1.44432 1.01941 0.99676 1.86863 1.21071 0.83911 0.89035 1.00246 1.23245 0.97175 0.98583 0.98227 1.22995 0.96897 0.89603 1.02509 0.87091 1.21292 0.90603 0.90975 0.91153 0.90959 1.22216 1.04152 0.95959 0.95499 1.21545 0.98498 0.95786 0.99926 1.21914 1.00125 1.00788 0.94389 1.22471 1.02479 0.82483 0.96522 1.47939 1.39731 1.10586 1.35010 1.17909 0.80342 0.87406 0.80762 1.90928 1.63563 1.14252 1.67298 1.21261 0.98622 0.95745 1.03777 1.21677 0.90369 1.00684 0.89090 1.21853 1.03747 0.92159 1.04047 1.18415 0.88104 0.85576 0.91134 1.91646 1.73079 1.69301 1.74831 1.67072 1.05231 1.39860 1.11000 1.23362 0.97876 0.88298 0.91024 1.21677 0.94408 0.86774 0.96297 0.93937 0.94018 0.94822 0.93291 0.90905 0.90194 0.90046 0.91922 0.91745 0.90821 0.91370 0.90688 0.88658 0.82261 0.82680 0.79840 0.95063 0.96875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.21 10.31 55.49 0.57 -27.64 16 2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 3 Si 0.91 22.85 29.55 -169.99 -5.02 17.82 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.23 -6.55 10.28 -15.06 -0.15 -6.70 16 8 H 0.07 2.07 7.83 -52.48 -0.41 1.66 16 9 N -0.60 -16.18 3.39 -170.06 -0.58 -16.75 16 10 C 0.18 4.72 5.38 -3.06 -0.02 4.70 16 11 C -0.13 -2.70 5.43 -24.90 -0.14 -2.83 16 12 C -0.10 -1.84 2.11 -88.47 -0.19 -2.02 16 13 H 0.11 2.28 5.73 -53.14 -0.30 1.98 16 14 C 0.16 2.15 2.77 -67.60 -0.19 1.97 16 15 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 16 C -0.14 -1.71 4.69 -26.61 -0.12 -1.84 16 17 C -0.12 -1.06 5.88 -26.69 -0.16 -1.21 16 18 C -0.13 -1.01 6.08 -26.61 -0.16 -1.18 16 19 C 0.08 0.64 4.71 -3.71 -0.02 0.62 16 20 N -0.60 -6.77 2.97 -166.36 -0.49 -7.27 16 21 C 0.55 7.15 7.17 -12.39 -0.09 7.06 16 22 O -0.49 -8.28 9.89 5.31 0.05 -8.23 16 23 C -0.19 -1.98 5.52 -104.82 -0.58 -2.56 16 24 C 0.01 0.07 9.72 -38.89 -0.38 -0.30 16 25 C -0.20 -1.64 10.07 -39.42 -0.40 -2.03 16 26 C 0.32 3.17 8.41 -17.23 -0.14 3.03 16 27 F -0.11 -1.10 17.29 2.25 0.04 -1.06 16 28 N -0.52 -5.40 10.36 -13.22 -0.14 -5.54 16 29 C 0.15 1.38 8.62 -17.14 -0.15 1.23 16 30 C 0.14 2.89 6.62 -2.52 -0.02 2.87 16 31 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.04 1.22 7.38 -51.93 -0.38 0.84 16 33 H 0.03 0.96 7.50 -51.93 -0.39 0.57 16 34 H 0.05 0.92 5.23 -51.93 -0.27 0.65 16 35 H 0.07 1.47 5.79 -51.93 -0.30 1.17 16 36 H 0.08 1.10 5.60 -51.93 -0.29 0.81 16 37 H 0.08 1.07 6.66 -51.93 -0.35 0.72 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 0.44 8.02 -51.93 -0.42 0.03 16 43 H 0.10 0.65 3.99 -51.93 -0.21 0.44 16 44 H 0.16 1.48 7.96 -52.49 -0.42 1.06 16 45 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 46 H 0.19 1.25 5.23 -52.49 -0.27 0.98 16 47 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.01 0.28 6.36 -51.93 -0.33 -0.05 16 LS Contribution 362.52 15.07 5.46 5.46 Total: -1.00 -34.05 362.52 -9.53 -43.58 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -6.44 Total: -0.78 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -2.99 Total: 0.40 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: -0.64 Total: -57.20 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.05 Total: -8.23 kcal Atomic # 9 Polarization: -1.10 SS G_CDS: 0.04 Total: -1.06 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.05 -9.53 -43.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039207511.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.374 kcal (2) G-P(sol) polarization free energy of solvation -34.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds