Wall clock time and date at job start Wed Apr 1 2020 04:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00414 * 2 1 4 4 H 1.48495 * 109.47234 * 239.99823 * 3 2 1 5 5 H 1.48510 * 109.46758 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47351 * 119.99378 * 3 2 1 7 7 C 1.38817 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99931 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99924 * 0.02562 * 7 2 1 10 10 C 1.47021 * 125.64841 * 359.96060 * 9 7 2 11 11 C 1.54331 * 107.27077 * 181.09458 * 10 9 7 12 12 C 1.55148 * 102.94136 * 22.18850 * 11 10 9 13 13 H 1.09001 * 111.03811 * 82.58777 * 12 11 10 14 14 C 1.53000 * 111.00566 * 206.42284 * 12 11 10 15 15 H 1.08999 * 109.59097 * 166.39360 * 14 12 11 16 16 C 1.53197 * 109.58306 * 45.96780 * 14 12 11 17 17 C 1.53044 * 109.31254 * 185.57615 * 16 14 12 18 18 C 1.53037 * 109.53775 * 61.36858 * 17 16 14 19 19 C 1.53197 * 109.31208 * 298.63510 * 18 17 16 20 20 N 1.46928 * 109.58760 * 286.68517 * 14 12 11 21 21 C 1.34773 * 120.62949 * 353.36809 * 20 14 12 22 22 O 1.21564 * 120.00093 * 5.91101 * 21 20 14 23 23 C 1.47726 * 120.00073 * 185.91320 * 21 20 14 24 24 C 1.40154 * 120.53342 * 208.14174 * 23 21 20 25 25 C 1.38155 * 118.32420 * 180.02562 * 24 23 21 26 26 C 1.38751 * 119.28311 * 0.02562 * 25 24 23 27 27 F 1.35102 * 119.48731 * 179.97438 * 26 25 24 28 28 N 1.32146 * 121.01683 * 359.97438 * 26 25 24 29 29 C 1.31685 * 121.84237 * 359.71146 * 28 26 25 30 30 C 1.47428 * 125.64955 * 179.97438 * 9 7 2 31 31 H 0.96996 * 119.99687 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.88067 * 300.50876 * 10 9 7 33 33 H 1.08991 * 109.88693 * 61.52158 * 10 9 7 34 34 H 1.08998 * 110.71560 * 263.82257 * 11 10 9 35 35 H 1.09004 * 110.71930 * 140.55723 * 11 10 9 36 36 H 1.08995 * 109.49912 * 305.53307 * 16 14 12 37 37 H 1.09002 * 109.49472 * 65.63250 * 16 14 12 38 38 H 1.08998 * 109.45918 * 301.34799 * 17 16 14 39 39 H 1.08999 * 109.46093 * 181.38639 * 17 16 14 40 40 H 1.08995 * 109.50353 * 178.68089 * 18 17 16 41 41 H 1.09001 * 109.52362 * 58.59542 * 18 17 16 42 42 H 1.09000 * 109.58712 * 294.84545 * 19 18 17 43 43 H 1.09005 * 109.70307 * 174.48891 * 19 18 17 44 44 H 1.07999 * 120.83431 * 359.97438 * 24 23 21 45 45 H 1.07999 * 120.35614 * 179.97438 * 25 24 23 46 46 H 1.07996 * 119.70799 * 180.30785 * 29 28 26 47 47 H 1.08998 * 110.36241 * 37.00022 * 30 9 7 48 48 H 1.08998 * 110.45865 * 274.72628 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6962 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1375 -2.5327 0.0008 11 6 -0.4485 -4.0441 0.0289 12 6 0.8519 -4.6556 0.6137 13 1 0.8575 -4.5955 1.7021 14 6 1.0369 -6.1007 0.1464 15 1 2.0541 -6.4273 0.3623 16 6 0.7744 -6.1907 -1.3602 17 6 0.8240 -7.6570 -1.7959 18 6 -0.2675 -8.4446 -1.0676 19 6 -0.0169 -8.3801 0.4423 20 7 0.0813 -6.9707 0.8456 21 6 -0.6901 -6.4851 1.8384 22 8 -0.6779 -5.2962 2.0915 23 6 -1.5503 -7.3977 2.6191 24 6 -2.7349 -6.9319 3.2056 25 6 -3.5046 -7.8246 3.9263 26 6 -3.0838 -9.1414 4.0457 27 9 -3.8330 -10.0177 4.7500 28 7 -1.9616 -9.5515 3.4812 29 6 -1.1991 -8.7384 2.7801 30 6 1.9334 -3.7312 0.0005 31 1 -0.4849 0.8400 -0.0004 32 1 -0.5574 -2.0514 0.8841 33 1 -0.5548 -2.0828 -0.8999 34 1 -0.6320 -4.4187 -0.9781 35 1 -1.2985 -4.2510 0.6792 36 1 -0.2094 -5.7780 -1.5834 37 1 1.5368 -5.6259 -1.8967 38 1 1.7997 -8.0761 -1.5499 39 1 0.6620 -7.7218 -2.8718 40 1 -0.2468 -9.4838 -1.3958 41 1 -1.2417 -8.0110 -1.2935 42 1 0.9144 -8.8941 0.6804 43 1 -0.8424 -8.8552 0.9725 44 1 -3.0379 -5.9010 3.0976 45 1 -4.4234 -7.5008 4.3924 46 1 -0.2913 -9.1115 2.3294 47 1 2.8333 -3.7403 0.6155 48 1 2.1671 -4.0436 -1.0172 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039207511.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:33 Heat of formation + Delta-G solvation = 19.168801 kcal Electronic energy + Delta-G solvation = -31763.498144 eV Core-core repulsion = 27542.022281 eV Total energy + Delta-G solvation = -4221.475863 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.17619 -42.34302 -40.80911 -38.77981 -38.24699 -35.10589 -34.04857 -33.86044 -32.87850 -31.61395 -30.60404 -29.02065 -27.03277 -26.01519 -25.42634 -24.85602 -24.03432 -22.21687 -21.97383 -21.27673 -20.02519 -19.18411 -18.97077 -18.46524 -17.91401 -17.27515 -16.93984 -16.72886 -16.46521 -16.37190 -16.02745 -15.70556 -15.45242 -15.09815 -14.91445 -14.68478 -14.45309 -14.26667 -14.18467 -14.06267 -13.88977 -13.81949 -13.74714 -13.42883 -12.95580 -12.86813 -12.65198 -12.26229 -12.06904 -12.04084 -11.81686 -11.66740 -11.57037 -11.43320 -11.24939 -11.21241 -11.07694 -10.96496 -10.65874 -10.11407 -10.00719 -9.42209 -8.83364 -7.82059 -5.17999 -0.61037 -0.06811 1.42859 1.47859 1.53928 1.64587 1.87821 2.35439 2.50392 2.51117 3.24095 3.34390 3.39240 3.61858 3.66921 3.77606 3.85210 3.87860 4.01224 4.11495 4.18001 4.20784 4.29553 4.38292 4.45062 4.47378 4.59343 4.64855 4.72546 4.74717 4.80073 4.85319 4.92496 4.97709 5.02367 5.14826 5.22714 5.25185 5.30619 5.34756 5.35897 5.46447 5.53809 5.57220 5.72492 5.80005 5.89245 6.21959 6.34988 6.41710 7.11919 7.19603 7.81583 8.48229 9.28064 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.014863 B = 0.002965 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.431730 B = 9441.815624 C =10851.141269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.073 4.073 3 Si 0.982 3.018 4 H -0.274 1.274 5 H -0.295 1.295 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.083 0.917 9 N -0.627 5.627 10 C 0.194 3.806 11 C -0.114 4.114 12 C -0.082 4.082 13 H 0.090 0.910 14 C 0.169 3.831 15 H 0.094 0.906 16 C -0.138 4.138 17 C -0.114 4.114 18 C -0.131 4.131 19 C 0.078 3.922 20 N -0.594 5.594 21 C 0.548 3.452 22 O -0.538 6.538 23 C -0.198 4.198 24 C 0.001 3.999 25 C -0.185 4.185 26 C 0.313 3.687 27 F -0.112 7.112 28 N -0.531 5.531 29 C 0.163 3.837 30 C 0.129 3.871 31 H 0.244 0.756 32 H -0.006 1.006 33 H -0.004 1.004 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.104 0.896 41 H 0.054 0.946 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.156 0.844 45 H 0.181 0.819 46 H 0.211 0.789 47 H 0.034 0.966 48 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.825 -26.241 2.039 26.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.265 4.265 3 Si 0.810 3.190 4 H -0.200 1.200 5 H -0.221 1.221 6 H -0.203 1.203 7 C -0.372 4.372 8 H 0.101 0.899 9 N -0.353 5.353 10 C 0.069 3.931 11 C -0.152 4.152 12 C -0.101 4.101 13 H 0.107 0.893 14 C 0.066 3.934 15 H 0.112 0.888 16 C -0.176 4.176 17 C -0.151 4.151 18 C -0.169 4.169 19 C -0.043 4.043 20 N -0.326 5.326 21 C 0.336 3.664 22 O -0.417 6.417 23 C -0.203 4.203 24 C -0.025 4.025 25 C -0.205 4.205 26 C 0.160 3.840 27 F -0.091 7.091 28 N -0.246 5.246 29 C 0.006 3.994 30 C 0.004 3.996 31 H 0.053 0.947 32 H 0.012 0.988 33 H 0.014 0.986 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.122 0.878 41 H 0.072 0.928 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.174 0.826 45 H 0.198 0.802 46 H 0.227 0.773 47 H 0.052 0.948 48 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -3.647 -26.322 2.299 26.672 hybrid contribution -0.326 2.340 0.083 2.364 sum -3.972 -23.982 2.382 24.425 Atomic orbital electron populations 1.70257 1.06491 1.25088 1.58478 1.25740 0.96640 1.01281 1.02865 0.85102 0.77067 0.78546 0.78319 1.19956 1.22088 1.20295 1.19486 0.91012 0.83955 1.42778 0.89933 1.44776 1.02438 1.01283 1.86772 1.20777 0.83739 0.92461 0.96141 1.23043 0.98419 0.94313 0.99381 1.22741 0.93942 0.92499 1.00918 0.89260 1.21111 0.92237 0.88040 0.91981 0.88785 1.22148 1.02410 0.98673 0.94347 1.21516 1.00013 0.93074 1.00498 1.21920 0.98848 1.02201 0.93912 1.22818 1.04587 0.80060 0.96844 1.48004 1.38566 1.12006 1.34042 1.18280 0.80179 0.87091 0.80827 1.90908 1.65394 1.16503 1.68911 1.21085 0.98747 0.96071 1.04433 1.21762 0.90557 1.00871 0.89290 1.22006 1.04209 0.91206 1.03115 1.18616 0.88170 0.86004 0.91167 1.91642 1.73129 1.69413 1.74880 1.67119 1.05658 1.40269 1.11527 1.23657 0.98190 0.87297 0.90207 1.21923 0.95262 0.85016 0.97410 0.94650 0.98753 0.98622 0.91771 0.90976 0.92324 0.91133 0.90080 0.91055 0.87808 0.92762 0.87528 0.87554 0.82636 0.80167 0.77293 0.94808 0.95153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.54 10.31 21.65 0.22 -61.32 16 2 C -0.07 -4.42 5.49 84.86 0.47 -3.95 16 3 Si 0.98 48.14 29.55 68.60 2.03 50.17 16 4 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.29 -14.49 7.11 99.48 0.71 -13.79 16 6 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 7 C -0.24 -14.57 10.28 84.04 0.86 -13.70 16 8 H 0.08 4.66 7.83 -2.91 -0.02 4.64 16 9 N -0.63 -35.00 3.39 -691.95 -2.35 -37.34 16 10 C 0.19 10.75 5.38 86.73 0.47 11.22 16 11 C -0.11 -4.77 5.43 31.78 0.17 -4.60 16 12 C -0.08 -3.01 2.11 -9.40 -0.02 -3.03 16 13 H 0.09 3.78 5.73 -21.51 -0.12 3.66 16 14 C 0.17 4.19 2.77 44.98 0.12 4.31 16 15 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 16 C -0.14 -3.09 4.69 30.67 0.14 -2.95 16 17 C -0.11 -1.57 5.88 30.62 0.18 -1.39 16 18 C -0.13 -1.44 6.08 30.67 0.19 -1.25 16 19 C 0.08 0.86 4.71 86.36 0.41 1.27 16 20 N -0.59 -12.11 2.97 -798.52 -2.37 -14.48 16 21 C 0.55 13.88 7.17 86.75 0.62 14.50 16 22 O -0.54 -18.95 9.89 -3.92 -0.04 -18.99 16 23 C -0.20 -3.88 5.52 -19.99 -0.11 -3.99 16 24 C 0.00 0.02 9.72 22.72 0.22 0.24 16 25 C -0.18 -2.76 10.07 22.37 0.23 -2.54 16 26 C 0.31 5.59 8.41 84.77 0.71 6.30 16 27 F -0.11 -2.04 17.29 44.97 0.78 -1.26 16 28 N -0.53 -9.80 10.36 -195.73 -2.03 -11.83 16 29 C 0.16 2.54 8.62 85.02 0.73 3.27 16 30 C 0.13 5.57 6.62 86.86 0.58 6.15 16 31 H 0.24 15.30 8.31 -92.71 -0.77 14.53 16 32 H -0.01 -0.37 7.38 -2.39 -0.02 -0.39 16 33 H 0.00 -0.27 7.50 -2.39 -0.02 -0.29 16 34 H 0.06 2.47 5.23 -2.39 -0.01 2.46 16 35 H 0.07 3.07 5.79 -2.39 -0.01 3.06 16 36 H 0.06 1.57 5.60 -2.39 -0.01 1.55 16 37 H 0.07 1.74 6.66 -2.39 -0.02 1.72 16 38 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.11 0.63 8.02 -2.39 -0.02 0.61 16 43 H 0.11 1.01 3.99 -2.38 -0.01 1.00 16 44 H 0.16 2.97 7.96 -2.91 -0.02 2.94 16 45 H 0.18 1.69 8.06 -2.91 -0.02 1.66 16 46 H 0.21 2.00 5.23 -2.91 -0.02 1.98 16 47 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.03 1.23 6.36 -2.39 -0.02 1.22 16 Total: -1.00 -79.60 362.52 3.10 -76.50 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: 0.89 Total: 8.70 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: 5.97 Total: 9.85 kcal Atomic # 7 Polarization: -118.45 SS G_CDS: -6.52 Total: -124.97 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.04 Total: -18.99 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.78 Total: -1.26 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 2.03 Total: 50.17 kcal Total: -79.60 3.10 -76.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039207511.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.667 kcal (2) G-P(sol) polarization free energy of solvation -79.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds