Wall clock time and date at job start Wed Apr 1 2020 04:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 119.99959 * 2 1 4 4 H 1.48503 * 109.47166 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47128 * 299.99401 * 3 2 1 6 6 H 1.48496 * 109.47211 * 59.99903 * 3 2 1 7 7 C 1.38818 * 120.00021 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00240 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00085 * 0.02562 * 7 2 1 10 10 C 1.47026 * 125.64535 * 0.02562 * 9 7 2 11 11 C 1.54332 * 107.26814 * 178.90330 * 10 9 7 12 12 C 1.55156 * 102.94007 * 337.80426 * 11 10 9 13 13 H 1.08998 * 111.00032 * 277.38916 * 12 11 10 14 14 C 1.52998 * 110.99938 * 153.57936 * 12 11 10 15 15 H 1.09002 * 109.70751 * 318.05315 * 14 12 11 16 16 C 1.52761 * 109.50864 * 197.93357 * 14 12 11 17 17 C 1.53042 * 109.38628 * 185.70520 * 16 14 12 18 18 C 1.53031 * 109.53678 * 61.24159 * 17 16 14 19 19 C 1.53194 * 109.31745 * 298.63704 * 18 17 16 20 20 N 1.46926 * 109.58904 * 78.41057 * 14 12 11 21 21 C 1.34778 * 120.62764 * 353.41680 * 20 14 12 22 22 O 1.21560 * 120.00091 * 6.36487 * 21 20 14 23 23 C 1.47730 * 119.99934 * 186.36534 * 21 20 14 24 24 C 1.40154 * 120.53249 * 217.42808 * 23 21 20 25 25 C 1.38153 * 118.32120 * 180.23964 * 24 23 21 26 26 C 1.38749 * 119.28615 * 359.46712 * 25 24 23 27 27 F 1.35100 * 119.49574 * 180.27494 * 26 25 24 28 28 N 1.32149 * 121.01419 * 0.29497 * 26 25 24 29 29 C 1.31687 * 121.84459 * 359.97438 * 28 26 25 30 30 C 1.47467 * 125.63007 * 179.97438 * 9 7 2 31 31 H 0.97000 * 120.00018 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.88710 * 59.48268 * 10 9 7 33 33 H 1.08999 * 110.00966 * 298.38554 * 10 9 7 34 34 H 1.08997 * 110.71799 * 219.43791 * 11 10 9 35 35 H 1.09000 * 110.71836 * 96.17023 * 11 10 9 36 36 H 1.09004 * 109.56144 * 65.66899 * 16 14 12 37 37 H 1.09000 * 109.39028 * 305.63606 * 16 14 12 38 38 H 1.09001 * 109.45803 * 301.22076 * 17 16 14 39 39 H 1.08996 * 109.44873 * 181.25611 * 17 16 14 40 40 H 1.08997 * 109.50116 * 178.68257 * 18 17 16 41 41 H 1.09000 * 109.52524 * 58.60296 * 18 17 16 42 42 H 1.08997 * 109.58458 * 294.85065 * 19 18 17 43 43 H 1.08994 * 109.70840 * 174.48957 * 19 18 17 44 44 H 1.07993 * 120.83516 * 0.02562 * 24 23 21 45 45 H 1.08003 * 120.35360 * 179.73670 * 25 24 23 46 46 H 1.07996 * 119.70257 * 180.02562 * 29 28 26 47 47 H 1.09006 * 110.34572 * 85.33005 * 30 9 7 48 48 H 1.08994 * 110.40457 * 322.99157 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 -0.1375 -2.5328 -0.0005 11 6 -0.4484 -4.0442 -0.0283 12 6 0.8524 -4.6558 -0.6125 13 1 0.8577 -4.5960 -1.7008 14 6 1.0371 -6.1008 -0.1447 15 1 0.7812 -6.1806 0.9119 16 6 2.4915 -6.5210 -0.3485 17 6 2.6426 -8.0068 -0.0143 18 6 1.7626 -8.8347 -0.9535 19 6 0.2960 -8.4406 -0.7525 20 7 0.1681 -6.9877 -0.9302 21 6 -0.7253 -6.4784 -1.8013 22 8 -0.7395 -5.2844 -2.0290 23 6 -1.6874 -7.3712 -2.4793 24 6 -2.0467 -7.1475 -3.8154 25 6 -2.9542 -8.0077 -4.4029 26 6 -3.4676 -9.0623 -3.6618 27 9 -4.3511 -9.9093 -4.2338 28 7 -3.1060 -9.2508 -2.4048 29 6 -2.2485 -8.4539 -1.8015 30 6 1.9342 -3.7314 0.0005 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5570 -2.0517 -0.8841 33 1 -0.5572 -2.0845 0.9000 34 1 -1.2980 -4.2512 -0.6789 35 1 -0.6323 -4.4186 0.9787 36 1 3.1362 -5.9336 0.3053 37 1 2.7751 -6.3511 -1.3872 38 1 2.3359 -8.1800 1.0173 39 1 3.6843 -8.3026 -0.1379 40 1 1.8885 -9.8942 -0.7304 41 1 2.0523 -8.6437 -1.9868 42 1 -0.0215 -8.7150 0.2534 43 1 -0.3264 -8.9544 -1.4851 44 1 -1.6273 -6.3215 -4.3705 45 1 -3.2573 -7.8633 -5.4294 46 1 -1.9770 -8.6404 -0.7730 47 1 2.1664 -4.0423 1.0192 48 1 2.8340 -3.7409 -0.6144 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039207512.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:37 Heat of formation + Delta-G solvation = 24.323028 kcal Electronic energy + Delta-G solvation = -31637.240343 eV Core-core repulsion = 27415.987983 eV Total energy + Delta-G solvation = -4221.252359 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.41847 -41.32881 -39.86751 -37.49128 -36.90638 -33.55341 -33.17591 -32.85635 -31.45364 -30.73484 -28.99729 -27.27898 -25.71483 -24.65411 -24.30321 -24.10416 -22.67092 -21.30729 -19.85552 -19.69242 -19.65686 -18.45566 -17.83736 -17.13986 -16.67017 -16.49191 -16.01472 -15.36679 -15.23873 -15.05287 -14.64590 -14.51204 -14.22153 -14.10654 -13.83354 -13.63459 -13.56361 -13.45190 -13.17577 -13.11930 -12.87147 -12.17931 -12.08032 -11.90634 -11.66157 -11.34385 -11.13569 -10.93289 -10.83139 -10.75692 -10.66286 -10.46951 -10.31015 -10.00124 -9.94480 -9.69516 -9.58688 -9.52455 -9.32691 -8.81590 -8.50448 -8.38714 -6.66427 -5.58074 -2.90895 0.18890 0.64683 2.54456 2.77925 3.07698 3.26825 3.45964 3.50718 3.53627 3.99219 4.17494 4.34262 4.44286 4.52054 4.59773 4.67178 4.75058 4.90975 4.94359 5.09069 5.14663 5.19890 5.32185 5.44058 5.50621 5.54840 5.56387 5.60958 5.71113 5.73376 5.83348 5.94869 6.00912 6.06183 6.08237 6.12421 6.26299 6.35780 6.48586 6.61012 6.75498 6.92686 7.04933 7.09548 7.29563 7.34670 7.71011 7.88291 8.01809 8.19079 8.41404 9.35852 9.96944 10.65065 11.53112 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.014179 B = 0.002977 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.342559 B = 9404.352948 C =10920.481247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.011 4.011 3 Si 0.909 3.091 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.224 4.224 8 H 0.076 0.924 9 N -0.605 5.605 10 C 0.182 3.818 11 C -0.134 4.134 12 C -0.096 4.096 13 H 0.107 0.893 14 C 0.162 3.838 15 H 0.072 0.928 16 C -0.132 4.132 17 C -0.120 4.120 18 C -0.134 4.134 19 C 0.096 3.904 20 N -0.601 5.601 21 C 0.547 3.453 22 O -0.482 6.482 23 C -0.186 4.186 24 C 0.005 3.995 25 C -0.196 4.196 26 C 0.320 3.680 27 F -0.110 7.110 28 N -0.516 5.516 29 C 0.164 3.836 30 C 0.138 3.862 31 H 0.249 0.751 32 H 0.043 0.957 33 H 0.034 0.966 34 H 0.081 0.919 35 H 0.038 0.962 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.157 0.843 45 H 0.155 0.845 46 H 0.176 0.824 47 H 0.011 0.989 48 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.829 -23.828 -5.319 24.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.207 4.207 3 Si 0.740 3.260 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.352 4.352 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.057 3.943 11 C -0.172 4.172 12 C -0.116 4.116 13 H 0.125 0.875 14 C 0.059 3.941 15 H 0.090 0.910 16 C -0.170 4.170 17 C -0.158 4.158 18 C -0.172 4.172 19 C -0.027 4.027 20 N -0.335 5.335 21 C 0.334 3.666 22 O -0.357 6.357 23 C -0.192 4.192 24 C -0.021 4.021 25 C -0.217 4.217 26 C 0.167 3.833 27 F -0.089 7.089 28 N -0.231 5.231 29 C 0.006 3.994 30 C 0.012 3.988 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.099 0.901 35 H 0.056 0.944 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.103 0.897 44 H 0.175 0.825 45 H 0.173 0.827 46 H 0.192 0.808 47 H 0.028 0.972 48 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -2.282 -23.667 -5.018 24.300 hybrid contribution 0.525 1.255 -0.442 1.430 sum -1.757 -22.412 -5.461 23.135 Atomic orbital electron populations 1.70017 1.04811 1.24574 1.57393 1.24800 0.95685 0.97537 1.02692 0.86080 0.78661 0.84105 0.77153 1.20610 1.21873 1.21897 1.19098 0.90347 0.82625 1.43178 0.90635 1.44494 1.01971 0.99770 1.86864 1.21068 0.83902 0.88952 1.00334 1.23228 0.97556 0.98724 0.97667 1.22874 0.96745 0.89491 1.02447 0.87475 1.21328 0.88517 0.90029 0.94197 0.90976 1.21951 0.96446 0.95655 1.02967 1.21543 0.99677 0.95272 0.99305 1.21908 0.94550 0.99940 1.00803 1.22105 0.97836 0.80709 1.02092 1.47942 1.37395 1.06660 1.41459 1.17930 0.80966 0.87454 0.80245 1.90944 1.69564 1.14011 1.61165 1.21248 1.02598 0.98863 0.96473 1.21629 0.91438 0.96259 0.92801 1.21833 1.00921 0.96150 1.02829 1.18384 0.88660 0.87596 0.88642 1.91646 1.65000 1.69531 1.82679 1.67038 1.15302 1.31192 1.09520 1.22961 0.88978 0.87678 0.99801 1.21650 0.94415 0.86660 0.96114 0.94016 0.93890 0.94780 0.90079 0.94360 0.89959 0.91379 0.91728 0.91675 0.90801 0.91456 0.90851 0.89653 0.82489 0.82714 0.80767 0.97182 0.94857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.33 10.31 55.49 0.57 -27.76 16 2 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 3 Si 0.91 22.86 29.55 -169.99 -5.02 17.84 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 7 C -0.22 -6.52 10.28 -15.06 -0.15 -6.67 16 8 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 9 N -0.61 -16.31 3.40 -170.01 -0.58 -16.89 16 10 C 0.18 4.79 5.37 -3.06 -0.02 4.77 16 11 C -0.13 -2.76 5.59 -24.89 -0.14 -2.90 16 12 C -0.10 -1.76 1.91 -88.46 -0.17 -1.92 16 13 H 0.11 2.18 5.90 -52.24 -0.31 1.87 16 14 C 0.16 2.15 2.57 -67.82 -0.17 1.98 16 15 H 0.07 0.96 7.86 -51.93 -0.41 0.55 16 16 C -0.13 -1.49 4.81 -26.83 -0.13 -1.62 16 17 C -0.12 -1.00 5.89 -26.69 -0.16 -1.16 16 18 C -0.13 -0.96 6.08 -26.62 -0.16 -1.13 16 19 C 0.10 0.73 4.82 -3.71 -0.02 0.72 16 20 N -0.60 -6.79 2.98 -166.62 -0.50 -7.28 16 21 C 0.55 7.11 7.07 -12.38 -0.09 7.03 16 22 O -0.48 -8.24 9.87 5.31 0.05 -8.19 16 23 C -0.19 -1.95 5.22 -104.82 -0.55 -2.49 16 24 C 0.00 0.04 9.77 -38.89 -0.38 -0.34 16 25 C -0.20 -1.60 10.07 -39.42 -0.40 -1.99 16 26 C 0.32 3.17 8.41 -17.23 -0.14 3.02 16 27 F -0.11 -1.10 17.29 2.25 0.04 -1.06 16 28 N -0.52 -5.47 10.36 -13.22 -0.14 -5.60 16 29 C 0.16 1.53 8.55 -17.14 -0.15 1.38 16 30 C 0.14 2.95 5.34 -2.49 -0.01 2.93 16 31 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.04 1.27 7.38 -51.93 -0.38 0.88 16 33 H 0.03 0.98 7.51 -51.93 -0.39 0.59 16 34 H 0.08 1.69 5.57 -51.98 -0.29 1.40 16 35 H 0.04 0.74 7.84 -51.93 -0.41 0.34 16 36 H 0.08 0.98 7.13 -51.93 -0.37 0.61 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.46 8.07 -51.93 -0.42 0.04 16 43 H 0.09 0.59 4.64 -51.93 -0.24 0.35 16 44 H 0.16 1.36 8.06 -52.49 -0.42 0.93 16 45 H 0.16 0.85 8.06 -52.48 -0.42 0.43 16 46 H 0.18 1.28 6.30 -52.49 -0.33 0.95 16 47 H 0.01 0.22 7.81 -51.93 -0.41 -0.19 16 48 H 0.03 0.69 8.13 -51.93 -0.42 0.27 16 LS Contribution 369.42 15.07 5.57 5.57 Total: -1.00 -34.25 369.42 -9.82 -44.07 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -6.88 Total: -1.86 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -2.93 Total: 1.18 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: -0.64 Total: -57.54 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: 0.05 Total: -8.19 kcal Atomic # 9 Polarization: -1.10 SS G_CDS: 0.04 Total: -1.06 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.25 -9.82 -44.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039207512.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.391 kcal (2) G-P(sol) polarization free energy of solvation -34.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds