Wall clock time and date at job start Wed Apr 1 2020 04:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86802 * 119.99917 * 2 1 4 4 H 1.48497 * 109.47304 * 264.33156 * 3 2 1 5 5 H 1.48495 * 109.47089 * 24.33385 * 3 2 1 6 6 H 1.48504 * 109.47197 * 144.33287 * 3 2 1 7 7 C 1.38813 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00048 * 344.04716 * 7 2 1 9 9 N 1.36944 * 119.99832 * 164.04872 * 7 2 1 10 10 C 1.47422 * 125.64669 * 159.04135 * 9 7 2 11 11 C 1.54911 * 104.83129 * 155.82974 * 10 9 7 12 12 C 1.55160 * 101.57647 * 37.01452 * 11 10 9 13 13 H 1.09004 * 110.72092 * 83.03818 * 12 11 10 14 14 C 1.53005 * 110.71610 * 206.12810 * 12 11 10 15 15 H 1.09001 * 109.69784 * 44.04064 * 14 12 11 16 16 C 1.53190 * 109.58285 * 164.38926 * 14 12 11 17 17 C 1.53046 * 109.33725 * 174.43791 * 16 14 12 18 18 C 1.53029 * 109.54037 * 298.62240 * 17 16 14 19 19 C 1.53197 * 109.31478 * 61.36157 * 18 17 16 20 20 N 1.46915 * 108.77454 * 305.36811 * 19 18 17 21 21 C 1.34780 * 120.63198 * 233.62851 * 20 19 18 22 22 O 1.21528 * 120.00760 * 171.83129 * 21 20 19 23 23 C 1.48009 * 119.99475 * 351.82839 * 21 20 19 24 24 N 1.32799 * 119.75327 * 322.01236 * 23 21 20 25 25 C 1.31432 * 121.66815 * 179.97438 * 24 23 21 26 26 C 1.38681 * 120.97941 * 0.03207 * 25 24 23 27 27 C 1.38451 * 119.39609 * 359.97070 * 26 25 24 28 28 C 1.38965 * 118.46296 * 359.73254 * 27 26 25 29 29 F 1.35108 * 120.50383 * 180.25635 * 28 27 26 30 30 C 1.47019 * 125.65047 * 338.99752 * 9 7 2 31 31 H 0.97001 * 120.00029 * 0.02562 * 1 2 3 32 32 H 1.09006 * 110.36792 * 36.99778 * 10 9 7 33 33 H 1.08994 * 110.46306 * 274.72380 * 10 9 7 34 34 H 1.08992 * 111.01037 * 278.94083 * 11 10 9 35 35 H 1.09006 * 111.00275 * 155.08081 * 11 10 9 36 36 H 1.09002 * 109.49975 * 54.47327 * 16 14 12 37 37 H 1.09003 * 109.50115 * 294.40870 * 16 14 12 38 38 H 1.08998 * 109.45494 * 58.64506 * 17 16 14 39 39 H 1.08999 * 109.45596 * 178.61107 * 17 16 14 40 40 H 1.09000 * 109.50153 * 181.31558 * 18 17 16 41 41 H 1.09001 * 109.50069 * 301.37626 * 18 17 16 42 42 H 1.09000 * 109.58232 * 65.15278 * 19 18 17 43 43 H 1.09002 * 109.58668 * 185.43346 * 19 18 17 44 44 H 1.08007 * 119.51018 * 180.02562 * 25 24 23 45 45 H 1.07999 * 120.30407 * 179.97438 * 26 25 24 46 46 H 1.07995 * 120.76975 * 180.02562 * 27 26 25 47 47 H 1.09004 * 109.88244 * 61.67933 * 30 9 7 48 48 H 1.08998 * 109.88217 * 300.51721 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6174 1.9773 -1.3932 5 1 1.3928 2.6842 0.5769 6 1 3.4827 1.4778 0.8164 7 6 2.0102 -1.2021 0.0005 8 1 1.5014 -2.1193 0.2580 9 7 3.3401 -1.2251 -0.3254 10 6 4.2951 -2.2882 0.0363 11 6 5.4174 -2.1918 -1.0272 12 6 5.5166 -0.6577 -1.2369 13 1 6.1441 -0.2034 -0.4700 14 6 6.0532 -0.3359 -2.6332 15 1 5.5630 -0.9714 -3.3707 16 6 5.7811 1.1355 -2.9613 17 6 6.4405 1.4872 -4.2969 18 6 7.9541 1.2891 -4.1883 19 6 8.2515 -0.1806 -3.8744 20 7 7.5044 -0.5674 -2.6701 21 6 8.1375 -1.1238 -1.6183 22 8 7.5407 -1.3030 -0.5749 23 6 9.5598 -1.5167 -1.7341 24 7 10.0080 -2.0423 -2.8683 25 6 11.2634 -2.4039 -3.0125 26 6 12.1740 -2.2497 -1.9779 27 6 11.7520 -1.7061 -0.7766 28 6 10.4210 -1.3264 -0.6526 29 9 9.9662 -0.7868 0.4995 30 6 4.0517 -0.1939 -1.0947 31 1 -0.4850 0.8401 -0.0004 32 1 3.8118 -3.2642 -0.0097 33 1 4.7007 -2.1133 1.0328 34 1 5.1259 -2.6942 -1.9495 35 1 6.3547 -2.5952 -0.6438 36 1 6.1945 1.7663 -2.1743 37 1 4.7059 1.2997 -3.0320 38 1 6.0446 0.8394 -5.0790 39 1 6.2274 2.5271 -4.5443 40 1 8.4254 1.5620 -5.1325 41 1 8.3471 1.9188 -3.3902 42 1 7.9405 -0.8035 -4.7132 43 1 9.3200 -0.3082 -3.7010 44 1 11.5907 -2.8274 -3.9506 45 1 13.2029 -2.5510 -2.1082 46 1 12.4424 -1.5757 0.0436 47 1 4.0138 0.7571 -0.5635 48 1 3.5988 -0.0884 -2.0806 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039238482.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:00 Heat of formation + Delta-G solvation = 7.842088 kcal Electronic energy + Delta-G solvation = -32436.989989 eV Core-core repulsion = 28215.022962 eV Total energy + Delta-G solvation = -4221.967027 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -50.09708 -42.21770 -40.81839 -38.99737 -38.41938 -34.99520 -34.27382 -33.43191 -33.11129 -31.94062 -31.15111 -29.27661 -27.18352 -26.05396 -25.23248 -24.67903 -24.06275 -22.49343 -21.98906 -21.36175 -20.75806 -19.02459 -18.72571 -18.53823 -18.10690 -17.78625 -17.32722 -16.90725 -16.54223 -16.23351 -16.08331 -15.60338 -15.40214 -15.25705 -14.97294 -14.96042 -14.60404 -14.46399 -14.30521 -14.23613 -14.05587 -14.01335 -13.82541 -13.42488 -13.37273 -13.04103 -12.81977 -12.47613 -12.38563 -12.31890 -11.91291 -11.84786 -11.64101 -11.45856 -11.37607 -11.14834 -10.91971 -10.86868 -10.83922 -10.21750 -10.01021 -9.55089 -9.05259 -8.22348 -5.52412 -0.48903 -0.00455 1.21154 1.30696 1.41220 1.51377 1.75896 2.34645 2.54535 2.86492 3.04032 3.10233 3.26546 3.50716 3.62698 3.63914 3.70828 3.86148 3.91499 3.98878 4.05862 4.09951 4.21455 4.25101 4.36670 4.39969 4.52696 4.53954 4.58471 4.64177 4.71152 4.76304 4.82982 4.85112 4.92690 4.95313 5.01255 5.05894 5.09925 5.12435 5.18892 5.22363 5.39215 5.44206 5.51234 5.62552 5.69381 6.06299 6.31077 6.59829 6.71654 7.05541 7.48597 8.09000 8.98816 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.015675 B = 0.003649 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.899587 B = 7672.327771 C = 8532.820645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.037 4.037 3 Si 0.962 3.038 4 H -0.265 1.265 5 H -0.305 1.305 6 H -0.283 1.283 7 C -0.235 4.235 8 H 0.060 0.940 9 N -0.630 5.630 10 C 0.130 3.870 11 C -0.103 4.103 12 C -0.081 4.081 13 H 0.091 0.909 14 C 0.166 3.834 15 H 0.083 0.917 16 C -0.138 4.138 17 C -0.114 4.114 18 C -0.131 4.131 19 C 0.114 3.886 20 N -0.585 5.585 21 C 0.548 3.452 22 O -0.532 6.532 23 C 0.032 3.968 24 N -0.442 5.442 25 C 0.089 3.911 26 C -0.099 4.099 27 C -0.112 4.112 28 C 0.072 3.928 29 F -0.136 7.136 30 C 0.114 3.886 31 H 0.264 0.736 32 H 0.043 0.957 33 H 0.015 0.985 34 H 0.059 0.941 35 H 0.098 0.902 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.106 0.894 41 H 0.055 0.945 42 H 0.085 0.915 43 H 0.099 0.901 44 H 0.210 0.790 45 H 0.198 0.802 46 H 0.178 0.822 47 H 0.013 0.987 48 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.711 -1.180 -13.742 37.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.231 4.231 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.234 1.234 6 H -0.211 1.211 7 C -0.363 4.363 8 H 0.078 0.922 9 N -0.357 5.357 10 C 0.005 3.995 11 C -0.141 4.141 12 C -0.100 4.100 13 H 0.109 0.891 14 C 0.063 3.937 15 H 0.101 0.899 16 C -0.176 4.176 17 C -0.151 4.151 18 C -0.169 4.169 19 C -0.008 4.008 20 N -0.316 5.316 21 C 0.336 3.664 22 O -0.410 6.410 23 C -0.105 4.105 24 N -0.154 5.154 25 C -0.072 4.072 26 C -0.118 4.118 27 C -0.138 4.138 28 C 0.049 3.951 29 F -0.115 7.115 30 C -0.011 4.011 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.033 0.967 34 H 0.078 0.922 35 H 0.116 0.884 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.125 0.875 41 H 0.074 0.926 42 H 0.103 0.897 43 H 0.117 0.883 44 H 0.226 0.774 45 H 0.215 0.785 46 H 0.196 0.804 47 H 0.030 0.970 48 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 33.520 -1.261 -13.821 36.280 hybrid contribution -0.311 0.994 1.703 1.996 sum 33.209 -0.268 -12.119 35.352 Atomic orbital electron populations 1.69889 1.06837 1.27234 1.56762 1.25635 0.95972 1.00623 1.00884 0.85763 0.76268 0.79975 0.78662 1.19121 1.23414 1.21095 1.18697 0.83282 0.93877 1.40486 0.92188 1.44953 1.05418 1.23489 1.61873 1.21746 0.90054 0.91398 0.96276 1.23070 0.97994 0.95169 0.97856 1.22510 0.92717 0.97327 0.97413 0.89081 1.21210 0.79443 0.96990 0.96029 0.89930 1.22063 1.01271 0.94769 0.99498 1.21520 0.95507 1.02691 0.95427 1.21971 0.96058 0.95604 1.03235 1.22051 0.97196 0.95587 0.85939 1.47930 1.07585 1.59565 1.16534 1.18300 0.85632 0.78572 0.83888 1.90830 1.65087 1.55005 1.30069 1.21081 0.94246 1.03706 0.91492 1.67849 1.18724 1.08279 1.20514 1.23761 0.86811 0.95169 1.01436 1.22838 1.03844 0.94373 0.90748 1.22105 0.92320 0.97702 1.01708 1.19113 0.94758 0.98773 0.82465 1.91559 1.89791 1.83147 1.46960 1.21980 0.93293 0.91657 0.94181 0.92701 0.93903 0.96656 0.92197 0.88400 0.92655 0.91743 0.90463 0.90442 0.87547 0.92637 0.89658 0.88320 0.77371 0.78531 0.80449 0.97009 0.94939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -64.18 13.97 21.65 0.30 -63.88 16 2 C -0.04 -2.37 5.48 84.86 0.46 -1.90 16 3 Si 0.96 52.20 24.32 68.60 1.67 53.87 16 4 H -0.27 -13.28 7.00 99.48 0.70 -12.59 16 5 H -0.31 -16.31 7.11 99.48 0.71 -15.60 16 6 H -0.28 -15.53 6.48 99.48 0.64 -14.88 16 7 C -0.23 -14.95 10.63 84.03 0.89 -14.05 16 8 H 0.06 4.09 8.06 -2.91 -0.02 4.06 16 9 N -0.63 -34.92 3.21 -692.01 -2.22 -37.13 16 10 C 0.13 6.21 7.23 86.86 0.63 6.83 16 11 C -0.10 -4.14 5.61 31.99 0.18 -3.97 16 12 C -0.08 -3.24 1.87 -9.61 -0.02 -3.26 16 13 H 0.09 4.03 5.95 -5.32 -0.03 4.00 16 14 C 0.17 5.16 2.47 44.96 0.11 5.27 16 15 H 0.08 2.50 7.90 -2.39 -0.02 2.48 16 16 C -0.14 -3.91 4.85 30.67 0.15 -3.76 16 17 C -0.11 -2.19 5.88 30.62 0.18 -2.01 16 18 C -0.13 -2.03 6.08 30.67 0.19 -1.84 16 19 C 0.11 2.02 5.78 86.37 0.50 2.52 16 20 N -0.58 -15.42 2.97 -798.07 -2.37 -17.80 16 21 C 0.55 16.45 6.93 86.83 0.60 17.06 16 22 O -0.53 -19.97 9.11 -3.80 -0.03 -20.00 16 23 C 0.03 0.74 5.77 41.91 0.24 0.98 16 24 N -0.44 -7.33 7.79 -184.78 -1.44 -8.77 16 25 C 0.09 0.64 11.18 84.86 0.95 1.59 16 26 C -0.10 -0.40 10.11 22.43 0.23 -0.18 16 27 C -0.11 -1.18 10.16 22.49 0.23 -0.95 16 28 C 0.07 1.52 7.27 22.76 0.17 1.68 16 29 F -0.14 -3.81 16.20 44.97 0.73 -3.09 16 30 C 0.11 5.52 3.70 86.73 0.32 5.84 16 31 H 0.26 16.64 8.31 -92.71 -0.77 15.87 16 32 H 0.04 1.99 8.14 -2.38 -0.02 1.98 16 33 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.06 2.28 7.88 -2.39 -0.02 2.26 16 35 H 0.10 3.87 5.45 -12.35 -0.07 3.81 16 36 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.06 2.06 6.75 -2.39 -0.02 2.05 16 38 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.10 1.58 5.25 -2.39 -0.01 1.57 16 44 H 0.21 -0.19 8.06 -2.91 -0.02 -0.21 16 45 H 0.20 -0.98 8.06 -2.91 -0.02 -1.00 16 46 H 0.18 0.91 8.06 -2.91 -0.02 0.89 16 47 H 0.01 0.65 3.12 -2.38 -0.01 0.64 16 48 H 0.03 1.59 6.86 -2.39 -0.02 1.57 16 Total: -1.00 -85.24 364.01 3.48 -81.76 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: 0.84 Total: 5.19 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 6.01 Total: 9.85 kcal Atomic # 7 Polarization: -121.85 SS G_CDS: -5.73 Total: -127.58 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.03 Total: -20.00 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.73 Total: -3.09 kcal Atomic # 14 Polarization: 52.20 SS G_CDS: 1.67 Total: 53.87 kcal Total: -85.24 3.48 -81.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039238482.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.602 kcal (2) G-P(sol) polarization free energy of solvation -85.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds