Wall clock time and date at job start Wed Apr 1 2020 04:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99673 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00422 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99911 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00518 * 3 2 1 7 7 C 1.38811 * 120.00372 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00017 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99745 * 359.97438 * 7 2 1 10 10 C 1.46712 * 120.00052 * 180.02562 * 9 7 2 11 11 C 1.52869 * 109.18956 * 154.99873 * 10 9 7 12 12 C 1.53223 * 109.86968 * 178.40605 * 11 10 9 13 13 H 1.09120 * 110.62525 * 118.97577 * 12 11 10 14 14 C 1.53360 * 109.02051 * 240.72607 * 12 11 10 15 15 C 1.52819 * 109.89539 * 61.35459 * 14 12 11 16 16 C 1.52811 * 110.65114 * 58.07796 * 15 14 12 17 17 C 1.53355 * 109.86781 * 301.90498 * 16 15 14 18 18 H 1.09119 * 110.53605 * 176.90717 * 17 16 15 19 19 C 1.52877 * 109.19131 * 275.79412 * 10 9 7 20 20 N 1.47499 * 107.74248 * 56.01303 * 17 16 15 21 21 C 1.34801 * 121.92443 * 120.02380 * 20 17 16 22 22 O 1.21282 * 119.99449 * 180.45933 * 21 20 17 23 23 C 1.50696 * 120.00175 * 0.46273 * 21 20 17 24 24 C 1.50704 * 109.47012 * 179.97438 * 23 21 20 25 25 N 1.31871 * 119.63343 * 90.00382 * 24 23 21 26 26 C 1.31843 * 121.74910 * 180.02562 * 25 24 23 27 27 C 1.38234 * 120.82183 * 359.97438 * 26 25 24 28 28 C 1.38596 * 119.19006 * 359.97438 * 27 26 25 29 29 C 1.38417 * 119.63718 * 269.72940 * 24 23 21 30 30 F 1.35103 * 120.44495 * 359.97438 * 29 24 23 31 31 H 0.97000 * 119.99954 * 179.97438 * 1 2 3 32 32 H 0.97000 * 120.00418 * 0.02562 * 9 7 2 33 33 H 1.09035 * 108.93389 * 35.39187 * 10 9 7 34 34 H 1.09266 * 109.26068 * 298.32909 * 11 10 9 35 35 H 1.08998 * 109.63952 * 57.63128 * 11 10 9 36 36 H 1.09092 * 109.47568 * 181.68638 * 14 12 11 37 37 H 1.09149 * 109.35537 * 301.19554 * 14 12 11 38 38 H 1.09397 * 108.99595 * 177.92614 * 15 14 12 39 39 H 1.08913 * 109.76819 * 296.76075 * 15 14 12 40 40 H 1.09088 * 109.53261 * 62.21682 * 16 15 14 41 41 H 1.09154 * 109.45220 * 181.81039 * 16 15 14 42 42 H 1.09000 * 109.63179 * 302.31885 * 19 10 9 43 43 H 1.09262 * 109.26294 * 61.60625 * 19 10 9 44 44 H 1.08991 * 109.47256 * 299.99674 * 23 21 20 45 45 H 1.08998 * 109.46741 * 59.99922 * 23 21 20 46 46 H 1.08003 * 119.58979 * 180.02562 * 26 25 24 47 47 H 1.07999 * 120.40939 * 180.02562 * 27 26 25 48 48 H 1.07999 * 120.80185 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 1.4001 5 1 3.5477 1.4404 -0.7000 6 1 1.4475 2.6527 -0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0593 -3.6586 -0.0005 11 6 1.1773 -4.7479 0.6096 12 6 1.9141 -6.0911 0.5811 13 1 2.0544 -6.4741 1.5932 14 6 1.1079 -7.0855 -0.2634 15 6 0.9871 -6.5717 -1.6976 16 6 2.3700 -6.3577 -2.3116 17 6 3.1708 -5.3656 -1.4594 18 1 4.1797 -5.2463 -1.8575 19 6 2.4368 -4.0209 -1.4370 20 7 3.2164 -5.8909 -0.0819 21 6 4.3809 -6.1801 0.5326 22 8 4.3772 -6.6184 1.6634 23 6 5.6871 -5.9587 -0.1856 24 6 6.8287 -6.3568 0.7141 25 7 7.2763 -7.5970 0.6896 26 6 8.2721 -7.9905 1.4589 27 6 8.8884 -7.1081 2.3263 28 6 8.4478 -5.7952 2.3810 29 6 7.3996 -5.4152 1.5528 30 9 6.9405 -4.1447 1.5688 31 1 -0.4850 -0.8401 -0.0004 32 1 0.3557 -2.3881 -0.0005 33 1 2.9643 -3.5446 0.5968 34 1 0.9443 -4.4855 1.6444 35 1 0.2473 -4.8246 0.0464 36 1 1.6108 -8.0536 -0.2641 37 1 0.1112 -7.2005 0.1665 38 1 0.4422 -7.3084 -2.2951 39 1 0.4304 -5.6356 -1.7078 40 1 2.9004 -7.3099 -2.3567 41 1 2.2613 -5.9608 -3.3226 42 1 1.5363 -4.0812 -2.0482 43 1 3.0900 -3.2456 -1.8445 44 1 5.7104 -6.5635 -1.0920 45 1 5.7828 -4.9054 -0.4490 46 1 8.6111 -9.0147 1.4101 47 1 9.7038 -7.4375 2.9532 48 1 8.9107 -5.0838 3.0489 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039295928.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:31 Heat of formation + Delta-G solvation = -29.773827 kcal Electronic energy + Delta-G solvation = -31904.156976 eV Core-core repulsion = 27680.558801 eV Total energy + Delta-G solvation = -4223.598175 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.07904 -40.97692 -40.20969 -38.06890 -35.15068 -33.67744 -32.91013 -32.58736 -32.01680 -31.88600 -28.95192 -28.19195 -25.82512 -24.87953 -23.82419 -23.21664 -23.06155 -21.75412 -20.60751 -20.44746 -17.90475 -17.66926 -17.56734 -17.43919 -16.90070 -16.53996 -15.92823 -15.61405 -15.37369 -14.90661 -14.48356 -14.26304 -14.13098 -13.99014 -13.83743 -13.73809 -13.58508 -13.45977 -13.32096 -13.11760 -12.86392 -12.66897 -12.32404 -12.15413 -11.90284 -11.47970 -11.28977 -10.95861 -10.85850 -10.72568 -10.68340 -10.41122 -10.18371 -10.10650 -10.02296 -9.96376 -9.85003 -9.62441 -9.16903 -9.03088 -8.91158 -8.39033 -7.02601 -6.08803 -3.08540 0.66491 0.84996 2.72653 2.94937 3.43206 3.52503 3.57154 3.70831 3.78011 4.02880 4.34405 4.43419 4.50206 4.65519 4.66971 4.75233 4.86533 4.94230 5.03371 5.07950 5.17359 5.23125 5.27115 5.32106 5.36871 5.44929 5.49042 5.52371 5.60369 5.67561 5.72595 5.77730 5.85157 5.87897 5.97338 6.03453 6.11288 6.14367 6.21752 6.25338 6.35513 6.41149 6.52594 6.71501 6.83099 7.01261 7.58052 7.60362 7.83305 8.26421 8.77055 9.23845 10.10239 10.25536 11.39723 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.009799 B = 0.003849 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2856.790332 B = 7272.634472 C = 9389.597934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.045 4.045 3 Si 1.080 2.920 4 H -0.296 1.296 5 H -0.295 1.295 6 H -0.288 1.288 7 C -0.327 4.327 8 H 0.063 0.937 9 N -0.737 5.737 10 C 0.196 3.804 11 C -0.137 4.137 12 C 0.148 3.852 13 H 0.098 0.902 14 C -0.124 4.124 15 C -0.120 4.120 16 C -0.125 4.125 17 C 0.135 3.865 18 H 0.090 0.910 19 C -0.146 4.146 20 N -0.596 5.596 21 C 0.531 3.469 22 O -0.543 6.543 23 C -0.097 4.097 24 C 0.128 3.872 25 N -0.449 5.449 26 C 0.090 3.910 27 C -0.147 4.147 28 C -0.109 4.109 29 C 0.064 3.936 30 F -0.122 7.122 31 H 0.255 0.745 32 H 0.366 0.634 33 H 0.046 0.954 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.117 0.883 45 H 0.114 0.886 46 H 0.163 0.837 47 H 0.144 0.856 48 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.936 -18.273 -1.877 23.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.242 4.242 3 Si 0.911 3.089 4 H -0.224 1.224 5 H -0.222 1.222 6 H -0.214 1.214 7 C -0.458 4.458 8 H 0.081 0.919 9 N -0.378 5.378 10 C 0.086 3.914 11 C -0.176 4.176 12 C 0.045 3.955 13 H 0.117 0.883 14 C -0.163 4.163 15 C -0.158 4.158 16 C -0.163 4.163 17 C 0.031 3.969 18 H 0.108 0.892 19 C -0.187 4.187 20 N -0.328 5.328 21 C 0.318 3.682 22 O -0.421 6.421 23 C -0.137 4.137 24 C -0.012 4.012 25 N -0.157 5.157 26 C -0.068 4.068 27 C -0.167 4.167 28 C -0.135 4.135 29 C 0.043 3.957 30 F -0.101 7.101 31 H 0.066 0.934 32 H 0.199 0.801 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.135 0.865 45 H 0.133 0.867 46 H 0.180 0.820 47 H 0.162 0.838 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 13.612 -17.353 -1.822 22.130 hybrid contribution 0.266 -0.788 0.540 0.991 sum 13.878 -18.141 -1.282 22.877 Atomic orbital electron populations 1.70850 1.06035 1.28401 1.53811 1.25721 0.97046 1.00899 1.00575 0.83227 0.73889 0.75466 0.76271 1.22362 1.22169 1.21422 1.20050 0.91940 0.85756 1.48100 0.91860 1.42519 1.04708 1.00766 1.89853 1.19804 0.94221 0.85063 0.92317 1.22303 0.99217 0.93979 1.02054 1.21457 0.81715 0.95421 0.96947 0.88345 1.21939 1.00141 0.98392 0.95788 1.21464 0.96908 1.01938 0.95470 1.21940 0.96392 0.99084 0.98897 1.21753 0.99961 0.94334 0.80888 0.89211 1.22733 1.00463 0.93881 1.01628 1.48413 1.05332 1.63622 1.15466 1.19995 0.84528 0.77407 0.86245 1.90687 1.87128 1.45723 1.18533 1.20593 0.89660 1.04684 0.98744 1.20632 0.96014 0.88868 0.95659 1.67466 1.11229 1.15106 1.21928 1.22783 0.91689 1.00348 0.91949 1.22060 1.01457 0.93065 1.00127 1.21665 0.95683 0.97852 0.98330 1.18558 0.96823 0.80888 0.99455 1.91576 1.87787 1.35491 1.95221 0.93396 0.80140 0.93553 0.91566 0.91252 0.91983 0.90949 0.92240 0.90760 0.92006 0.90774 0.91378 0.91397 0.86500 0.86749 0.81951 0.83777 0.83415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -29.20 13.70 55.49 0.76 -28.44 16 2 C -0.04 -1.31 5.50 -17.43 -0.10 -1.40 16 3 Si 1.08 26.19 29.92 -169.99 -5.09 21.11 16 4 H -0.30 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.33 -9.17 9.91 -15.06 -0.15 -9.32 16 8 H 0.06 1.77 7.83 -52.48 -0.41 1.36 16 9 N -0.74 -18.23 5.11 -53.40 -0.27 -18.50 16 10 C 0.20 3.89 2.50 -67.95 -0.17 3.72 16 11 C -0.14 -2.29 4.90 -26.68 -0.13 -2.42 16 12 C 0.15 2.18 3.47 -67.08 -0.23 1.95 16 13 H 0.10 1.58 7.19 -51.86 -0.37 1.21 16 14 C -0.12 -1.48 5.37 -26.64 -0.14 -1.63 16 15 C -0.12 -1.36 5.36 -26.92 -0.14 -1.50 16 16 C -0.12 -1.36 5.38 -26.64 -0.14 -1.50 16 17 C 0.13 1.74 3.39 -67.09 -0.23 1.52 16 18 H 0.09 0.99 6.23 -51.86 -0.32 0.67 16 19 C -0.15 -2.42 5.00 -26.68 -0.13 -2.55 16 20 N -0.60 -8.70 1.81 -156.32 -0.28 -8.99 16 21 C 0.53 8.41 7.74 -10.98 -0.08 8.33 16 22 O -0.54 -10.44 15.60 5.56 0.09 -10.35 16 23 C -0.10 -1.24 4.22 -29.03 -0.12 -1.36 16 24 C 0.13 1.73 5.28 -82.51 -0.44 1.30 16 25 N -0.45 -5.72 10.27 -9.42 -0.10 -5.82 16 26 C 0.09 0.86 11.18 -17.55 -0.20 0.66 16 27 C -0.15 -1.22 10.11 -39.45 -0.40 -1.61 16 28 C -0.11 -1.11 10.16 -39.21 -0.40 -1.51 16 29 C 0.06 0.86 7.27 -39.28 -0.29 0.57 16 30 F -0.12 -1.84 16.49 2.25 0.04 -1.80 16 31 H 0.25 7.73 6.77 -40.82 -0.28 7.45 16 32 H 0.37 9.33 6.62 -40.82 -0.27 9.06 16 33 H 0.05 1.04 7.82 -51.91 -0.41 0.63 16 34 H 0.07 1.19 8.16 -51.78 -0.42 0.77 16 35 H 0.07 1.10 6.37 -51.93 -0.33 0.77 16 36 H 0.06 0.73 8.15 -51.88 -0.42 0.31 16 37 H 0.07 0.79 8.15 -51.85 -0.42 0.37 16 38 H 0.06 0.58 8.18 -51.70 -0.42 0.16 16 39 H 0.07 0.94 5.23 -51.98 -0.27 0.67 16 40 H 0.06 0.63 8.15 -51.88 -0.42 0.20 16 41 H 0.07 0.73 8.15 -51.84 -0.42 0.31 16 42 H 0.07 1.13 6.36 -51.93 -0.33 0.80 16 43 H 0.07 1.23 8.16 -51.78 -0.42 0.81 16 44 H 0.12 1.22 7.89 -51.93 -0.41 0.82 16 45 H 0.11 1.38 7.37 -51.93 -0.38 1.00 16 46 H 0.16 1.00 8.06 -52.48 -0.42 0.58 16 47 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 48 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 377.94 15.07 5.70 5.70 Total: -1.00 -35.10 377.94 -9.46 -44.56 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -6.81 Total: 9.31 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -3.49 Total: -6.77 kcal Atomic # 7 Polarization: -61.85 SS G_CDS: 0.11 Total: -61.74 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 26.19 SS G_CDS: -5.09 Total: 21.11 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.10 -9.46 -44.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039295928.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.781 kcal (2) G-P(sol) polarization free energy of solvation -35.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds