Wall clock time and date at job start Wed Apr 1 2020 04:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 120.00266 * 2 1 4 4 H 1.48497 * 109.46685 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46862 * 300.00128 * 3 2 1 6 6 H 1.48497 * 109.46951 * 60.00286 * 3 2 1 7 7 C 1.38810 * 119.99599 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00329 * 197.12460 * 7 2 1 9 9 N 1.36940 * 120.00268 * 16.85253 * 7 2 1 10 10 C 1.46927 * 120.67666 * 207.36932 * 9 7 2 11 11 C 1.52758 * 109.08500 * 234.05329 * 10 9 7 12 12 C 1.53120 * 109.35994 * 305.08386 * 11 10 9 13 13 C 1.52478 * 109.65942 * 60.36440 * 12 11 10 14 14 C 1.53845 * 110.21755 * 178.08344 * 13 12 11 15 15 C 1.54505 * 104.79484 * 240.96296 * 14 13 12 16 16 N 1.48183 * 104.63255 * 23.80228 * 15 14 13 17 17 C 1.34774 * 127.80486 * 140.73276 * 16 15 14 18 18 O 1.21276 * 120.00219 * 179.97438 * 17 16 15 19 19 C 1.50700 * 119.99952 * 359.97438 * 17 16 15 20 20 C 1.50697 * 109.47460 * 179.97438 * 19 17 16 21 21 C 1.38234 * 119.59079 * 124.72275 * 20 19 17 22 22 C 1.38593 * 119.18713 * 179.78042 * 21 20 19 23 23 C 1.38880 * 118.40013 * 0.48389 * 22 21 20 24 24 F 1.35095 * 120.44246 * 179.77583 * 23 22 21 25 25 C 1.38421 * 119.11095 * 359.75929 * 23 22 21 26 26 N 1.31849 * 119.58516 * 305.00075 * 20 19 17 27 27 C 1.48266 * 104.39701 * 320.69822 * 16 15 14 28 28 C 1.47033 * 120.67331 * 27.64935 * 9 7 2 29 29 H 0.96999 * 119.99710 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.57716 * 353.91040 * 10 9 7 31 31 H 1.09009 * 109.57385 * 114.29060 * 10 9 7 32 32 H 1.08999 * 109.56625 * 185.06032 * 11 10 9 33 33 H 1.08998 * 109.36301 * 64.98342 * 11 10 9 34 34 H 1.08996 * 109.44307 * 300.30296 * 12 11 10 35 35 H 1.09004 * 109.43703 * 180.42179 * 12 11 10 36 36 H 1.09001 * 110.37120 * 359.79315 * 14 13 12 37 37 H 1.08996 * 110.36867 * 122.02201 * 14 13 12 38 38 H 1.09004 * 110.39841 * 142.58899 * 15 14 13 39 39 H 1.08997 * 110.40146 * 265.00898 * 15 14 13 40 40 H 1.09000 * 109.46756 * 300.00048 * 19 17 16 41 41 H 1.09001 * 109.47361 * 59.99464 * 19 17 16 42 42 H 1.08001 * 120.40192 * 359.97438 * 21 20 19 43 43 H 1.08002 * 120.80081 * 180.26185 * 22 21 20 44 44 H 1.07997 * 119.63433 * 179.97438 * 25 23 22 45 45 H 1.08998 * 110.42203 * 280.40102 * 27 16 15 46 46 H 1.08995 * 110.42629 * 157.91999 * 27 16 15 47 47 H 1.09001 * 109.56595 * 247.05646 * 28 9 7 48 48 H 1.08990 * 109.57361 * 7.43227 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0543 -1.2232 0.2749 9 7 1.3696 -2.3625 -0.3449 10 6 1.8240 -3.6553 0.1850 11 6 2.0780 -4.6109 -0.9794 12 6 0.8171 -4.7050 -1.8431 13 6 0.4690 -3.3267 -2.3944 14 6 -0.7690 -3.4148 -3.3034 15 6 -0.2758 -2.9409 -4.6889 16 7 1.1853 -3.1869 -4.6703 17 6 1.9587 -3.6457 -5.6742 18 8 3.1499 -3.7949 -5.5025 19 6 1.3431 -3.9732 -7.0103 20 6 2.4144 -4.4619 -7.9507 21 6 2.2717 -5.6902 -8.5687 22 6 3.2598 -6.1295 -9.4356 23 6 4.3666 -5.3163 -9.6421 24 9 5.3564 -5.7060 -10.4749 25 6 4.4418 -4.1012 -8.9834 26 7 3.4787 -3.7151 -8.1695 27 6 1.6046 -2.8135 -3.2981 28 6 0.2167 -2.3405 -1.2572 29 1 -0.4850 0.8401 0.0004 30 1 2.7465 -3.5152 0.7484 31 1 1.0562 -4.0734 0.8362 32 1 2.3287 -5.5988 -0.5929 33 1 2.9045 -4.2347 -1.5820 34 1 -0.0109 -5.0731 -1.2374 35 1 0.9945 -5.3924 -2.6702 36 1 -1.1265 -4.4430 -3.3591 37 1 -1.5578 -2.7590 -2.9348 38 1 -0.7491 -3.5226 -5.4800 39 1 -0.4808 -1.8788 -4.8223 40 1 0.5894 -4.7501 -6.8823 41 1 0.8768 -3.0793 -7.4244 42 1 1.3994 -6.2986 -8.3807 43 1 3.1730 -7.0828 -9.9357 44 1 5.2989 -3.4624 -9.1375 45 1 1.7004 -1.7312 -3.2109 46 1 2.5449 -3.3015 -3.0416 47 1 -0.6833 -2.6306 -0.7152 48 1 0.0925 -1.3372 -1.6646 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040266690.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:08 Heat of formation + Delta-G solvation = -16.107707 kcal Electronic energy + Delta-G solvation = -31009.816358 eV Core-core repulsion = 26786.810790 eV Total energy + Delta-G solvation = -4223.005568 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.24169 -40.65217 -39.85079 -38.14423 -35.74590 -33.17615 -32.87096 -32.75585 -31.45726 -30.00303 -28.87099 -28.38773 -25.44990 -25.30443 -24.22158 -23.21109 -22.57673 -22.12892 -20.38877 -19.14067 -18.06288 -17.91030 -17.63899 -16.86700 -16.74519 -16.38445 -16.03445 -15.62572 -15.00970 -14.82579 -14.43122 -14.32546 -14.02203 -13.96238 -13.89899 -13.46482 -13.27253 -13.25869 -12.91392 -12.77566 -12.56005 -12.35995 -12.24912 -12.05706 -11.80575 -11.46916 -11.05397 -11.00614 -10.83243 -10.70251 -10.37869 -10.26650 -10.21906 -10.11409 -9.83203 -9.75595 -9.63412 -9.46697 -9.40011 -9.07048 -8.49487 -8.35781 -6.67251 -5.80164 -3.20789 0.60148 0.83623 2.85383 3.07833 3.37531 3.46238 3.46395 3.49223 3.70276 4.00465 4.26489 4.43927 4.49240 4.52241 4.67998 4.92127 4.99699 5.06170 5.13031 5.21351 5.24756 5.39392 5.44836 5.51495 5.53414 5.57072 5.63464 5.65190 5.68762 5.82259 6.10056 6.12696 6.16040 6.22549 6.28618 6.31820 6.38301 6.43587 6.52931 6.69608 6.78398 6.84472 6.94382 7.04372 7.29603 7.59009 7.64416 7.80619 7.85663 8.40840 8.43468 9.20829 9.83951 10.40795 11.28619 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.015080 B = 0.002627 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.285908 B =10655.565123 C =11233.569003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.002 3.998 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.291 1.291 7 C -0.247 4.247 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.145 3.855 11 C -0.139 4.139 12 C -0.091 4.091 13 C -0.094 4.094 14 C -0.124 4.124 15 C 0.101 3.899 16 N -0.624 5.624 17 C 0.536 3.464 18 O -0.529 6.529 19 C -0.089 4.089 20 C 0.137 3.863 21 C -0.138 4.138 22 C -0.109 4.109 23 C 0.040 3.960 24 F -0.133 7.133 25 C 0.083 3.917 26 N -0.427 5.427 27 C 0.129 3.871 28 C 0.188 3.812 29 H 0.252 0.748 30 H 0.052 0.948 31 H 0.016 0.984 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.043 0.957 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.109 0.891 41 H 0.113 0.887 42 H 0.145 0.855 43 H 0.147 0.853 44 H 0.167 0.833 45 H 0.076 0.924 46 H 0.081 0.919 47 H 0.022 0.978 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.938 -12.205 -17.955 21.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.196 4.196 3 Si 0.728 3.272 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.376 4.376 8 H 0.083 0.917 9 N -0.314 5.314 10 C 0.019 3.981 11 C -0.178 4.178 12 C -0.128 4.128 13 C -0.097 4.097 14 C -0.163 4.163 15 C -0.022 4.022 16 N -0.359 5.359 17 C 0.323 3.677 18 O -0.405 6.405 19 C -0.129 4.129 20 C -0.001 4.001 21 C -0.158 4.158 22 C -0.136 4.136 23 C 0.019 3.981 24 F -0.111 7.111 25 C -0.076 4.076 26 N -0.134 5.134 27 C 0.008 3.992 28 C 0.062 3.938 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.034 0.966 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.127 0.873 41 H 0.131 0.869 42 H 0.163 0.837 43 H 0.165 0.835 44 H 0.184 0.816 45 H 0.094 0.906 46 H 0.099 0.901 47 H 0.040 0.960 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.203 -11.373 -17.519 20.922 hybrid contribution 0.423 -0.044 -0.569 0.710 sum -0.780 -11.417 -18.088 21.405 Atomic orbital electron populations 1.70029 1.05153 1.25302 1.54412 1.24989 0.95277 0.98262 1.01083 0.86278 0.79557 0.84098 0.77252 1.20225 1.21557 1.21790 1.19229 0.92619 0.84686 1.41084 0.91652 1.44059 1.35095 1.01447 1.50783 1.20819 0.97458 0.86916 0.92930 1.22038 0.97717 0.98975 0.99090 1.21318 0.97928 0.95503 0.98097 1.21856 0.93295 0.97659 0.96878 1.22541 0.98484 1.01447 0.93850 1.22442 0.80454 1.00940 0.98403 1.49173 1.09048 1.64438 1.13216 1.19653 0.86365 0.77477 0.84188 1.90737 1.14706 1.52999 1.82032 1.20592 0.96182 1.04020 0.92096 1.20707 0.93233 0.91079 0.95071 1.21864 1.00134 0.96578 0.97201 1.21592 0.92829 1.00368 0.98804 1.18863 0.87999 0.96500 0.94785 1.91515 1.59522 1.90964 1.69131 1.22935 0.98575 0.93350 0.92764 1.67542 1.00080 1.34177 1.11623 1.22426 0.98522 1.00430 0.77831 1.20790 0.88744 0.97168 0.87133 0.93751 0.92955 0.96572 0.93218 0.92100 0.92606 0.93815 0.91565 0.89931 0.91047 0.90893 0.87308 0.86920 0.83683 0.83513 0.81603 0.90574 0.90072 0.96016 0.89148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.23 11.17 55.49 0.62 -24.61 16 2 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 3 Si 0.90 21.53 29.59 -169.99 -5.03 16.50 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.25 -6.59 9.59 -15.06 -0.14 -6.74 16 8 H 0.07 1.76 7.88 -52.49 -0.41 1.34 16 9 N -0.59 -14.21 2.83 -172.84 -0.49 -14.70 16 10 C 0.15 3.01 6.47 -3.93 -0.03 2.98 16 11 C -0.14 -2.46 5.87 -26.79 -0.16 -2.62 16 12 C -0.09 -1.49 4.48 -26.94 -0.12 -1.62 16 13 C -0.09 -1.63 0.68 -154.04 -0.11 -1.73 16 14 C -0.12 -1.68 6.29 -25.50 -0.16 -1.84 16 15 C 0.10 1.20 6.92 -2.33 -0.02 1.18 16 16 N -0.62 -9.49 3.32 -169.39 -0.56 -10.05 16 17 C 0.54 8.28 7.85 -10.99 -0.09 8.19 16 18 O -0.53 -10.50 15.60 5.56 0.09 -10.41 16 19 C -0.09 -0.92 5.08 -29.04 -0.15 -1.07 16 20 C 0.14 1.59 5.76 -82.59 -0.48 1.11 16 21 C -0.14 -1.20 9.71 -39.45 -0.38 -1.58 16 22 C -0.11 -0.94 10.16 -39.21 -0.40 -1.33 16 23 C 0.04 0.41 7.35 -39.28 -0.29 0.12 16 24 F -0.13 -1.36 17.28 2.25 0.04 -1.33 16 25 C 0.08 0.96 11.17 -17.47 -0.20 0.77 16 26 N -0.43 -5.87 9.22 -9.42 -0.09 -5.96 16 27 C 0.13 2.38 5.79 -2.59 -0.01 2.36 16 28 C 0.19 4.13 3.66 -3.94 -0.01 4.11 16 29 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 31 H 0.02 0.34 8.14 -51.92 -0.42 -0.08 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 1.16 6.21 -51.93 -0.32 0.84 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.78 7.70 -51.93 -0.40 0.38 16 37 H 0.08 1.12 7.69 -51.93 -0.40 0.72 16 38 H 0.07 0.60 7.31 -51.93 -0.38 0.22 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.11 0.76 7.68 -51.93 -0.40 0.36 16 41 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.15 0.78 7.95 -52.49 -0.42 0.37 16 43 H 0.15 0.85 8.06 -52.49 -0.42 0.42 16 44 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 45 H 0.08 1.60 7.72 -51.93 -0.40 1.20 16 46 H 0.08 1.67 5.63 -51.93 -0.29 1.38 16 47 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.09 2.23 5.90 -51.93 -0.31 1.93 16 LS Contribution 383.13 15.07 5.77 5.77 Total: -1.00 -32.77 383.13 -9.55 -42.32 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -7.08 Total: 0.18 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -2.82 Total: 2.29 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: -0.52 Total: -55.32 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.77 -9.55 -42.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040266690.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.211 kcal (2) G-P(sol) polarization free energy of solvation -32.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds