Wall clock time and date at job start Wed Apr 1 2020 04:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 120.00266 * 2 1 4 4 H 1.48497 * 109.46685 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46862 * 300.00128 * 3 2 1 6 6 H 1.48497 * 109.46951 * 60.00286 * 3 2 1 7 7 C 1.38810 * 119.99599 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00329 * 197.12460 * 7 2 1 9 9 N 1.36940 * 120.00268 * 16.85253 * 7 2 1 10 10 C 1.46927 * 120.67666 * 207.36932 * 9 7 2 11 11 C 1.52758 * 109.08500 * 234.05329 * 10 9 7 12 12 C 1.53120 * 109.35994 * 305.08386 * 11 10 9 13 13 C 1.52478 * 109.65942 * 60.36440 * 12 11 10 14 14 C 1.53845 * 110.21755 * 178.08344 * 13 12 11 15 15 C 1.54505 * 104.79484 * 240.96296 * 14 13 12 16 16 N 1.48183 * 104.63255 * 23.80228 * 15 14 13 17 17 C 1.34774 * 127.80486 * 140.73276 * 16 15 14 18 18 O 1.21276 * 120.00219 * 179.97438 * 17 16 15 19 19 C 1.50700 * 119.99952 * 359.97438 * 17 16 15 20 20 C 1.50697 * 109.47460 * 179.97438 * 19 17 16 21 21 C 1.38234 * 119.59079 * 124.72275 * 20 19 17 22 22 C 1.38593 * 119.18713 * 179.78042 * 21 20 19 23 23 C 1.38880 * 118.40013 * 0.48389 * 22 21 20 24 24 F 1.35095 * 120.44246 * 179.77583 * 23 22 21 25 25 C 1.38421 * 119.11095 * 359.75929 * 23 22 21 26 26 N 1.31849 * 119.58516 * 305.00075 * 20 19 17 27 27 C 1.48266 * 104.39701 * 320.69822 * 16 15 14 28 28 C 1.47033 * 120.67331 * 27.64935 * 9 7 2 29 29 H 0.96999 * 119.99710 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.57716 * 353.91040 * 10 9 7 31 31 H 1.09009 * 109.57385 * 114.29060 * 10 9 7 32 32 H 1.08999 * 109.56625 * 185.06032 * 11 10 9 33 33 H 1.08998 * 109.36301 * 64.98342 * 11 10 9 34 34 H 1.08996 * 109.44307 * 300.30296 * 12 11 10 35 35 H 1.09004 * 109.43703 * 180.42179 * 12 11 10 36 36 H 1.09001 * 110.37120 * 359.79315 * 14 13 12 37 37 H 1.08996 * 110.36867 * 122.02201 * 14 13 12 38 38 H 1.09004 * 110.39841 * 142.58899 * 15 14 13 39 39 H 1.08997 * 110.40146 * 265.00898 * 15 14 13 40 40 H 1.09000 * 109.46756 * 300.00048 * 19 17 16 41 41 H 1.09001 * 109.47361 * 59.99464 * 19 17 16 42 42 H 1.08001 * 120.40192 * 359.97438 * 21 20 19 43 43 H 1.08002 * 120.80081 * 180.26185 * 22 21 20 44 44 H 1.07997 * 119.63433 * 179.97438 * 25 23 22 45 45 H 1.08998 * 110.42203 * 280.40102 * 27 16 15 46 46 H 1.08995 * 110.42629 * 157.91999 * 27 16 15 47 47 H 1.09001 * 109.56595 * 247.05646 * 28 9 7 48 48 H 1.08990 * 109.57361 * 7.43227 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0543 -1.2232 0.2749 9 7 1.3696 -2.3625 -0.3449 10 6 1.8240 -3.6553 0.1850 11 6 2.0780 -4.6109 -0.9794 12 6 0.8171 -4.7050 -1.8431 13 6 0.4690 -3.3267 -2.3944 14 6 -0.7690 -3.4148 -3.3034 15 6 -0.2758 -2.9409 -4.6889 16 7 1.1853 -3.1869 -4.6703 17 6 1.9587 -3.6457 -5.6742 18 8 3.1499 -3.7949 -5.5025 19 6 1.3431 -3.9732 -7.0103 20 6 2.4144 -4.4619 -7.9507 21 6 2.2717 -5.6902 -8.5687 22 6 3.2598 -6.1295 -9.4356 23 6 4.3666 -5.3163 -9.6421 24 9 5.3564 -5.7060 -10.4749 25 6 4.4418 -4.1012 -8.9834 26 7 3.4787 -3.7151 -8.1695 27 6 1.6046 -2.8135 -3.2981 28 6 0.2167 -2.3405 -1.2572 29 1 -0.4850 0.8401 0.0004 30 1 2.7465 -3.5152 0.7484 31 1 1.0562 -4.0734 0.8362 32 1 2.3287 -5.5988 -0.5929 33 1 2.9045 -4.2347 -1.5820 34 1 -0.0109 -5.0731 -1.2374 35 1 0.9945 -5.3924 -2.6702 36 1 -1.1265 -4.4430 -3.3591 37 1 -1.5578 -2.7590 -2.9348 38 1 -0.7491 -3.5226 -5.4800 39 1 -0.4808 -1.8788 -4.8223 40 1 0.5894 -4.7501 -6.8823 41 1 0.8768 -3.0793 -7.4244 42 1 1.3994 -6.2986 -8.3807 43 1 3.1730 -7.0828 -9.9357 44 1 5.2989 -3.4624 -9.1375 45 1 1.7004 -1.7312 -3.2109 46 1 2.5449 -3.3015 -3.0416 47 1 -0.6833 -2.6306 -0.7152 48 1 0.0925 -1.3372 -1.6646 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040266690.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:07 Heat of formation + Delta-G solvation = -35.860805 kcal Electronic energy + Delta-G solvation = -31010.672916 eV Core-core repulsion = 26786.810790 eV Total energy + Delta-G solvation = -4223.862126 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -50.01184 -41.61373 -40.97947 -39.46820 -37.24332 -34.85915 -33.85516 -33.47905 -32.84674 -31.80613 -30.08926 -29.36437 -27.26202 -26.71103 -24.96331 -24.42915 -23.94531 -23.33348 -21.90970 -20.23550 -19.59864 -18.66208 -18.62025 -18.45919 -17.91228 -17.28136 -16.89878 -16.83837 -16.59223 -16.09247 -15.76925 -15.54826 -15.45739 -14.98293 -14.89375 -14.65070 -14.63322 -14.36704 -14.17091 -14.05899 -13.94933 -13.58214 -13.26031 -13.11483 -12.98473 -12.90697 -12.79536 -12.63739 -12.43306 -12.40409 -12.07316 -11.91971 -11.73142 -11.36856 -11.04151 -11.01153 -10.93674 -10.85439 -10.53582 -10.50041 -9.85779 -9.63478 -8.64164 -7.87216 -5.29490 -0.14736 0.14961 1.41998 1.45616 1.54664 1.72159 2.00791 2.49842 2.64110 2.97064 3.25833 3.27226 3.50914 3.62169 3.74276 3.78965 3.86771 3.91627 3.92606 4.02152 4.29346 4.30831 4.34772 4.40035 4.48459 4.58094 4.60945 4.63285 4.71238 4.76274 4.82834 4.87910 4.88339 4.95688 4.97396 4.99424 5.11670 5.16240 5.19465 5.30085 5.35650 5.38523 5.52965 5.61168 5.63243 5.69439 5.79887 6.40580 6.71155 6.89615 7.17463 7.24994 7.88463 8.39241 9.18766 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.015080 B = 0.002627 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.285908 B =10655.565123 C =11233.569003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.042 4.042 3 Si 0.953 3.047 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.256 4.256 8 H 0.055 0.945 9 N -0.610 5.610 10 C 0.141 3.859 11 C -0.130 4.130 12 C -0.084 4.084 13 C -0.087 4.087 14 C -0.119 4.119 15 C 0.102 3.898 16 N -0.623 5.623 17 C 0.529 3.471 18 O -0.583 6.583 19 C -0.077 4.077 20 C 0.113 3.887 21 C -0.124 4.124 22 C -0.105 4.105 23 C 0.032 3.968 24 F -0.136 7.136 25 C 0.060 3.940 26 N -0.471 5.471 27 C 0.138 3.862 28 C 0.198 3.802 29 H 0.250 0.750 30 H 0.044 0.956 31 H 0.019 0.981 32 H 0.078 0.922 33 H 0.040 0.960 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.126 0.874 39 H 0.070 0.930 40 H 0.157 0.843 41 H 0.131 0.869 42 H 0.189 0.811 43 H 0.180 0.820 44 H 0.168 0.832 45 H 0.036 0.964 46 H 0.053 0.947 47 H 0.004 0.996 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.052 -14.958 -20.108 25.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.238 4.238 3 Si 0.782 3.218 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.387 4.387 8 H 0.073 0.927 9 N -0.333 5.333 10 C 0.016 3.984 11 C -0.169 4.169 12 C -0.122 4.122 13 C -0.089 4.089 14 C -0.158 4.158 15 C -0.020 4.020 16 N -0.357 5.357 17 C 0.319 3.681 18 O -0.463 6.463 19 C -0.117 4.117 20 C -0.026 4.026 21 C -0.143 4.143 22 C -0.131 4.131 23 C 0.011 3.989 24 F -0.115 7.115 25 C -0.099 4.099 26 N -0.180 5.180 27 C 0.015 3.985 28 C 0.073 3.927 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.037 0.963 32 H 0.096 0.904 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.116 0.884 37 H 0.097 0.903 38 H 0.144 0.856 39 H 0.088 0.912 40 H 0.175 0.825 41 H 0.149 0.851 42 H 0.206 0.794 43 H 0.197 0.803 44 H 0.185 0.815 45 H 0.054 0.946 46 H 0.071 0.929 47 H 0.022 0.978 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.337 -14.143 -19.691 24.472 hybrid contribution 1.143 0.800 0.146 1.402 sum -2.194 -13.343 -19.545 23.767 Atomic orbital electron populations 1.70142 1.06062 1.25598 1.55521 1.25567 0.96018 1.00650 1.01555 0.85416 0.78506 0.80880 0.76957 1.20068 1.21582 1.21621 1.19400 0.92464 0.86220 1.40594 0.92708 1.44316 1.35442 1.01846 1.51716 1.20940 0.96963 0.86267 0.94246 1.21920 0.97992 0.99235 0.97769 1.21288 0.97374 0.94983 0.98554 1.21642 0.94969 0.96752 0.95574 1.22546 0.96271 1.03419 0.93521 1.22661 0.78293 1.01896 0.99120 1.49238 1.10592 1.64085 1.11738 1.20688 0.85812 0.76096 0.85545 1.90717 1.17310 1.55158 1.83096 1.20706 0.96418 1.06415 0.88135 1.21113 0.93123 0.92328 0.95999 1.22278 1.01111 0.95403 0.95524 1.22017 0.91690 1.01066 0.98319 1.18985 0.88693 0.96533 0.94739 1.91503 1.59871 1.90911 1.69212 1.23025 0.98822 0.94488 0.93521 1.67470 1.01507 1.36110 1.12873 1.21978 0.98008 0.97679 0.80876 1.20586 0.87388 0.96800 0.87964 0.94030 0.93785 0.96268 0.90366 0.94091 0.91366 0.91748 0.88447 0.90268 0.85633 0.91217 0.82493 0.85078 0.79386 0.80278 0.81498 0.94595 0.92854 0.97791 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.48 11.17 21.65 0.24 -53.24 16 2 C -0.04 -2.35 4.92 84.86 0.42 -1.94 16 3 Si 0.95 45.76 29.59 68.60 2.03 47.79 16 4 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 6 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 7 C -0.26 -14.30 9.59 84.03 0.81 -13.50 16 8 H 0.06 3.10 7.88 -2.91 -0.02 3.07 16 9 N -0.61 -30.41 2.83 -700.74 -1.99 -32.39 16 10 C 0.14 5.95 6.47 86.22 0.56 6.51 16 11 C -0.13 -4.53 5.87 30.55 0.18 -4.35 16 12 C -0.08 -2.60 4.48 30.46 0.14 -2.46 16 13 C -0.09 -2.95 0.68 -51.88 -0.04 -2.98 16 14 C -0.12 -2.85 6.29 31.39 0.20 -2.66 16 15 C 0.10 2.07 6.92 86.57 0.60 2.67 16 16 N -0.62 -17.98 3.32 -808.23 -2.68 -20.66 16 17 C 0.53 15.48 7.85 87.66 0.69 16.17 16 18 O -0.58 -23.47 15.60 -3.02 -0.05 -23.52 16 19 C -0.08 -1.30 5.08 29.10 0.15 -1.15 16 20 C 0.11 2.32 5.76 42.55 0.25 2.56 16 21 C -0.12 -1.62 9.71 22.35 0.22 -1.40 16 22 C -0.10 -1.44 10.16 22.51 0.23 -1.21 16 23 C 0.03 0.62 7.35 22.47 0.17 0.79 16 24 F -0.14 -2.70 17.28 44.97 0.78 -1.92 16 25 C 0.06 1.41 11.17 84.73 0.95 2.36 16 26 N -0.47 -12.87 9.22 -183.71 -1.69 -14.57 16 27 C 0.14 5.21 5.79 86.35 0.50 5.71 16 28 C 0.20 8.97 3.66 86.15 0.32 9.29 16 29 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 30 H 0.04 1.87 7.93 -2.39 -0.02 1.85 16 31 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.04 1.59 6.21 -2.39 -0.01 1.58 16 34 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 36 H 0.10 1.79 7.70 -2.39 -0.02 1.77 16 37 H 0.08 1.99 7.69 -2.39 -0.02 1.98 16 38 H 0.13 1.27 7.31 -2.39 -0.02 1.25 16 39 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.16 1.08 7.68 -2.39 -0.02 1.07 16 41 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.19 0.75 7.95 -2.91 -0.02 0.72 16 43 H 0.18 1.23 8.06 -2.91 -0.02 1.21 16 44 H 0.17 3.47 8.06 -2.91 -0.02 3.45 16 45 H 0.04 1.62 7.72 -2.39 -0.02 1.60 16 46 H 0.05 2.30 5.63 -2.39 -0.01 2.29 16 47 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 48 H 0.06 2.94 5.90 -2.39 -0.01 2.93 16 Total: -1.00 -78.39 383.13 3.92 -74.47 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: 0.97 Total: 9.64 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: 6.31 Total: 14.40 kcal Atomic # 7 Polarization: -114.74 SS G_CDS: -6.12 Total: -120.86 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.05 Total: -23.52 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.78 Total: -1.92 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -78.39 3.92 -74.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040266690.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.612 kcal (2) G-P(sol) polarization free energy of solvation -78.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds