Wall clock time and date at job start Wed Apr 1 2020 04:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99833 * 2 1 4 4 H 1.48502 * 109.47176 * 269.99797 * 3 2 1 5 5 H 1.48506 * 109.46954 * 29.99813 * 3 2 1 6 6 H 1.48502 * 109.46788 * 149.99835 * 3 2 1 7 7 C 1.38807 * 120.00022 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00366 * 197.11630 * 7 2 1 9 9 N 1.36942 * 120.00180 * 16.84789 * 7 2 1 10 10 C 1.46928 * 120.67512 * 207.37492 * 9 7 2 11 11 C 1.52759 * 109.07977 * 234.05146 * 10 9 7 12 12 C 1.53119 * 109.36403 * 305.07921 * 11 10 9 13 13 C 1.52481 * 109.65229 * 60.36940 * 12 11 10 14 14 C 1.53848 * 110.21392 * 178.08746 * 13 12 11 15 15 C 1.54503 * 104.79043 * 240.96273 * 14 13 12 16 16 N 1.48186 * 104.63672 * 23.80000 * 15 14 13 17 17 C 1.34770 * 127.80554 * 140.67013 * 16 15 14 18 18 O 1.21280 * 120.00002 * 180.02562 * 17 16 15 19 19 C 1.50698 * 119.99954 * 0.02562 * 17 16 15 20 20 C 1.50703 * 109.47160 * 180.02562 * 19 17 16 21 21 N 1.31874 * 119.63421 * 90.00543 * 20 19 17 22 22 C 1.31848 * 121.74970 * 180.02562 * 21 20 19 23 23 C 1.38238 * 120.81980 * 359.97438 * 22 21 20 24 24 C 1.38592 * 119.18861 * 359.97438 * 23 22 21 25 25 C 1.38425 * 119.63770 * 269.73185 * 20 19 17 26 26 F 1.35095 * 120.44333 * 359.97438 * 25 20 19 27 27 C 1.48259 * 104.39100 * 320.69736 * 16 15 14 28 28 C 1.47023 * 120.67532 * 27.65178 * 9 7 2 29 29 H 0.96996 * 120.00432 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.57411 * 353.90345 * 10 9 7 31 31 H 1.08998 * 109.57676 * 114.28975 * 10 9 7 32 32 H 1.08999 * 109.56491 * 185.05383 * 11 10 9 33 33 H 1.08998 * 109.36382 * 64.99065 * 11 10 9 34 34 H 1.09001 * 109.44169 * 300.31187 * 12 11 10 35 35 H 1.08998 * 109.43568 * 180.42151 * 12 11 10 36 36 H 1.08994 * 110.37119 * 359.78714 * 14 13 12 37 37 H 1.08993 * 110.37402 * 122.02288 * 14 13 12 38 38 H 1.09008 * 110.40254 * 142.58550 * 15 14 13 39 39 H 1.08999 * 110.40401 * 265.00584 * 15 14 13 40 40 H 1.09001 * 109.47619 * 300.00889 * 19 17 16 41 41 H 1.09003 * 109.47279 * 60.00840 * 19 17 16 42 42 H 1.07999 * 119.58828 * 180.02562 * 22 21 20 43 43 H 1.07997 * 120.40363 * 180.02562 * 23 22 21 44 44 H 1.08001 * 120.79611 * 179.97438 * 24 23 22 45 45 H 1.09001 * 110.42885 * 280.39469 * 27 16 15 46 46 H 1.09002 * 110.42515 * 157.91605 * 27 16 15 47 47 H 1.09002 * 109.57285 * 247.05972 * 28 9 7 48 48 H 1.09002 * 109.57179 * 7.43269 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0544 -1.2228 0.2758 9 7 1.3697 -2.3628 -0.3427 10 6 1.8242 -3.6551 0.1885 11 6 2.0781 -4.6118 -0.9750 12 6 0.8172 -4.7068 -1.8386 13 6 0.4692 -3.3290 -2.3913 14 6 -0.7690 -3.4180 -3.3001 15 6 -0.2759 -2.9456 -4.6860 16 7 1.1854 -3.1914 -4.6673 17 6 1.9585 -3.6522 -5.6704 18 8 3.1496 -3.8019 -5.4983 19 6 1.3428 -3.9814 -7.0059 20 6 2.4138 -4.4735 -7.9451 21 7 2.6908 -5.7616 -8.0007 22 6 3.6195 -6.2374 -8.8066 23 6 4.3422 -5.3945 -9.6301 24 6 4.0802 -4.0339 -9.6019 25 6 3.0919 -3.5691 -8.7441 26 9 2.7992 -2.2515 -8.6870 27 6 1.6046 -2.8166 -3.2955 28 6 0.2169 -2.3418 -1.2549 29 1 -0.4850 0.8400 -0.0004 30 1 2.7467 -3.5143 0.7517 31 1 1.0565 -4.0725 0.8400 32 1 2.3290 -5.5992 -0.5876 33 1 2.9047 -4.2361 -1.5780 34 1 -0.0108 -5.0744 -1.2324 35 1 0.9947 -5.3950 -2.6650 36 1 -1.1263 -4.4463 -3.3548 37 1 -1.5578 -2.7620 -2.9321 38 1 -0.7491 -3.5280 -5.4766 39 1 -0.4809 -1.8835 -4.8205 40 1 0.5884 -4.7575 -6.8769 41 1 0.8772 -3.0878 -7.4216 42 1 3.8174 -7.2990 -8.8241 43 1 5.1012 -5.7916 -10.2879 44 1 4.6295 -3.3518 -10.2340 45 1 1.7004 -1.7342 -3.2093 46 1 2.5449 -3.3043 -3.0384 47 1 -0.6832 -2.6313 -0.7127 48 1 0.0926 -1.3388 -1.6633 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040357180.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:47 Heat of formation + Delta-G solvation = -17.361637 kcal Electronic energy + Delta-G solvation = -31434.997464 eV Core-core repulsion = 27211.937522 eV Total energy + Delta-G solvation = -4223.059942 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.18717 -40.55717 -39.87958 -38.21460 -35.75725 -33.47555 -33.02924 -32.15202 -31.44799 -29.99108 -28.92815 -28.57098 -25.52803 -25.29639 -23.85091 -23.24600 -22.68469 -22.12262 -20.37869 -19.15276 -18.05483 -17.93018 -17.50420 -17.11782 -16.72990 -16.55575 -15.90761 -15.55772 -15.10306 -14.74815 -14.26046 -14.23864 -14.01316 -13.90359 -13.78020 -13.54824 -13.43149 -13.21732 -12.95910 -12.75504 -12.53362 -12.30643 -12.24739 -12.05968 -11.80109 -11.46859 -11.04159 -10.99323 -10.82277 -10.69944 -10.36330 -10.26326 -10.21221 -10.10761 -9.87859 -9.74388 -9.71906 -9.46371 -9.38775 -9.07652 -8.48990 -8.38359 -6.66549 -5.79313 -3.20182 0.62596 0.81195 2.80234 3.04279 3.38783 3.46070 3.46466 3.47465 3.74031 3.99955 4.29492 4.40514 4.49820 4.61051 4.64276 4.94483 4.99827 5.08539 5.14779 5.22420 5.30026 5.39662 5.43643 5.53804 5.55579 5.58984 5.66289 5.68912 5.71344 5.83839 6.11350 6.14933 6.17782 6.22835 6.30426 6.32724 6.39144 6.45387 6.54391 6.71117 6.79263 6.85718 6.95933 7.06066 7.30875 7.57534 7.60008 7.80768 7.82242 8.33928 8.44256 9.21550 9.84670 10.41722 11.29393 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.014194 B = 0.002980 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.217279 B = 9392.650933 C =10137.557364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.003 3.997 3 Si 0.899 3.101 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.248 4.248 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.145 3.855 11 C -0.139 4.139 12 C -0.091 4.091 13 C -0.094 4.094 14 C -0.124 4.124 15 C 0.100 3.900 16 N -0.621 5.621 17 C 0.540 3.460 18 O -0.541 6.541 19 C -0.093 4.093 20 C 0.130 3.870 21 N -0.448 5.448 22 C 0.093 3.907 23 C -0.148 4.148 24 C -0.108 4.108 25 C 0.061 3.939 26 F -0.127 7.127 27 C 0.128 3.872 28 C 0.189 3.811 29 H 0.253 0.747 30 H 0.052 0.948 31 H 0.017 0.983 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.044 0.956 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.117 0.883 41 H 0.111 0.889 42 H 0.164 0.836 43 H 0.145 0.855 44 H 0.148 0.852 45 H 0.077 0.923 46 H 0.082 0.918 47 H 0.022 0.978 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.512 -10.993 -19.151 22.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.196 4.196 3 Si 0.729 3.271 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.377 4.377 8 H 0.083 0.917 9 N -0.314 5.314 10 C 0.019 3.981 11 C -0.178 4.178 12 C -0.129 4.129 13 C -0.097 4.097 14 C -0.163 4.163 15 C -0.024 4.024 16 N -0.354 5.354 17 C 0.327 3.673 18 O -0.418 6.418 19 C -0.133 4.133 20 C -0.010 4.010 21 N -0.156 5.156 22 C -0.065 4.065 23 C -0.167 4.167 24 C -0.135 4.135 25 C 0.040 3.960 26 F -0.105 7.105 27 C 0.007 3.993 28 C 0.062 3.938 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.035 0.965 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.135 0.865 41 H 0.129 0.871 42 H 0.181 0.819 43 H 0.163 0.837 44 H 0.165 0.835 45 H 0.095 0.905 46 H 0.100 0.900 47 H 0.040 0.960 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.650 -11.474 -18.564 21.834 hybrid contribution 0.819 1.710 -0.561 1.977 sum 1.469 -9.764 -19.126 21.524 Atomic orbital electron populations 1.70017 1.05137 1.25417 1.54302 1.24987 0.95276 0.98243 1.01069 0.86335 0.79204 0.83816 0.77741 1.21458 1.21794 1.20446 1.19202 0.92616 0.84695 1.41214 0.91673 1.44051 1.35089 1.01469 1.50774 1.20821 0.97454 0.86897 0.92935 1.22036 0.97708 0.98994 0.99063 1.21324 0.97935 0.95486 0.98168 1.21862 0.93233 0.97737 0.96854 1.22541 0.98472 1.01564 0.93714 1.22478 0.80261 1.01010 0.98605 1.49135 1.09201 1.63898 1.13212 1.19636 0.86284 0.77082 0.84256 1.90717 1.14990 1.53664 1.82459 1.20544 0.96930 1.03701 0.92153 1.20649 0.96546 0.88940 0.94886 1.67489 1.16035 1.13462 1.18605 1.22820 0.91382 1.00871 0.91414 1.22070 1.01022 0.92915 1.00739 1.21639 0.96379 0.97118 0.98343 1.18520 0.98649 0.78923 0.99933 1.91527 1.92240 1.31368 1.95374 1.22463 0.98670 1.00444 0.77733 1.20785 0.88765 0.97107 0.87123 0.93686 0.92958 0.96539 0.93173 0.92148 0.92551 0.93699 0.91457 0.89861 0.90917 0.90762 0.86497 0.87109 0.81851 0.83723 0.83465 0.90470 0.90006 0.95968 0.89172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.38 11.17 55.49 0.62 -24.76 16 2 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 3 Si 0.90 21.64 29.59 -169.99 -5.03 16.61 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.25 -6.67 9.59 -15.06 -0.14 -6.81 16 8 H 0.07 1.76 7.88 -52.48 -0.41 1.35 16 9 N -0.59 -14.37 2.83 -172.85 -0.49 -14.86 16 10 C 0.15 3.05 6.47 -3.93 -0.03 3.03 16 11 C -0.14 -2.52 5.86 -26.79 -0.16 -2.68 16 12 C -0.09 -1.56 4.48 -26.94 -0.12 -1.68 16 13 C -0.09 -1.68 0.68 -154.04 -0.11 -1.79 16 14 C -0.12 -1.76 6.29 -25.50 -0.16 -1.92 16 15 C 0.10 1.27 6.92 -2.33 -0.02 1.26 16 16 N -0.62 -10.03 3.32 -169.40 -0.56 -10.60 16 17 C 0.54 9.00 7.91 -10.99 -0.09 8.91 16 18 O -0.54 -11.21 16.30 5.56 0.09 -11.12 16 19 C -0.09 -1.15 4.80 -29.03 -0.14 -1.29 16 20 C 0.13 1.71 5.28 -82.50 -0.44 1.27 16 21 N -0.45 -5.75 10.27 -9.42 -0.10 -5.84 16 22 C 0.09 0.88 11.18 -17.54 -0.20 0.68 16 23 C -0.15 -1.17 10.11 -39.45 -0.40 -1.57 16 24 C -0.11 -1.02 10.16 -39.21 -0.40 -1.42 16 25 C 0.06 0.76 7.27 -39.28 -0.29 0.47 16 26 F -0.13 -1.66 16.49 2.25 0.04 -1.62 16 27 C 0.13 2.43 5.79 -2.59 -0.02 2.42 16 28 C 0.19 4.20 3.66 -3.95 -0.01 4.19 16 29 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 30 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 31 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 1.18 6.21 -51.93 -0.32 0.86 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.86 7.70 -51.93 -0.40 0.46 16 37 H 0.08 1.17 7.69 -51.93 -0.40 0.77 16 38 H 0.07 0.70 7.31 -51.92 -0.38 0.32 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.12 1.22 7.95 -51.93 -0.41 0.81 16 41 H 0.11 1.14 7.62 -51.93 -0.40 0.74 16 42 H 0.16 1.03 8.06 -52.49 -0.42 0.60 16 43 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 44 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 45 H 0.08 1.65 7.73 -51.93 -0.40 1.25 16 46 H 0.08 1.72 5.63 -51.93 -0.29 1.43 16 47 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.09 2.25 5.90 -51.93 -0.31 1.95 16 LS Contribution 383.58 15.07 5.78 5.78 Total: -1.00 -33.01 383.58 -9.51 -42.52 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -7.08 Total: 0.84 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -2.79 Total: 3.05 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: -0.53 Total: -56.06 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.01 -9.51 -42.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040357180.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.156 kcal (2) G-P(sol) polarization free energy of solvation -33.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds