Wall clock time and date at job start Wed Apr 1 2020 04:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99833 * 2 1 4 4 H 1.48502 * 109.47176 * 269.99797 * 3 2 1 5 5 H 1.48506 * 109.46954 * 29.99813 * 3 2 1 6 6 H 1.48502 * 109.46788 * 149.99835 * 3 2 1 7 7 C 1.38807 * 120.00022 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00366 * 197.11630 * 7 2 1 9 9 N 1.36942 * 120.00180 * 16.84789 * 7 2 1 10 10 C 1.46928 * 120.67512 * 207.37492 * 9 7 2 11 11 C 1.52759 * 109.07977 * 234.05146 * 10 9 7 12 12 C 1.53119 * 109.36403 * 305.07921 * 11 10 9 13 13 C 1.52481 * 109.65229 * 60.36940 * 12 11 10 14 14 C 1.53848 * 110.21392 * 178.08746 * 13 12 11 15 15 C 1.54503 * 104.79043 * 240.96273 * 14 13 12 16 16 N 1.48186 * 104.63672 * 23.80000 * 15 14 13 17 17 C 1.34770 * 127.80554 * 140.67013 * 16 15 14 18 18 O 1.21280 * 120.00002 * 180.02562 * 17 16 15 19 19 C 1.50698 * 119.99954 * 0.02562 * 17 16 15 20 20 C 1.50703 * 109.47160 * 180.02562 * 19 17 16 21 21 N 1.31874 * 119.63421 * 90.00543 * 20 19 17 22 22 C 1.31848 * 121.74970 * 180.02562 * 21 20 19 23 23 C 1.38238 * 120.81980 * 359.97438 * 22 21 20 24 24 C 1.38592 * 119.18861 * 359.97438 * 23 22 21 25 25 C 1.38425 * 119.63770 * 269.73185 * 20 19 17 26 26 F 1.35095 * 120.44333 * 359.97438 * 25 20 19 27 27 C 1.48259 * 104.39100 * 320.69736 * 16 15 14 28 28 C 1.47023 * 120.67532 * 27.65178 * 9 7 2 29 29 H 0.96996 * 120.00432 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.57411 * 353.90345 * 10 9 7 31 31 H 1.08998 * 109.57676 * 114.28975 * 10 9 7 32 32 H 1.08999 * 109.56491 * 185.05383 * 11 10 9 33 33 H 1.08998 * 109.36382 * 64.99065 * 11 10 9 34 34 H 1.09001 * 109.44169 * 300.31187 * 12 11 10 35 35 H 1.08998 * 109.43568 * 180.42151 * 12 11 10 36 36 H 1.08994 * 110.37119 * 359.78714 * 14 13 12 37 37 H 1.08993 * 110.37402 * 122.02288 * 14 13 12 38 38 H 1.09008 * 110.40254 * 142.58550 * 15 14 13 39 39 H 1.08999 * 110.40401 * 265.00584 * 15 14 13 40 40 H 1.09001 * 109.47619 * 300.00889 * 19 17 16 41 41 H 1.09003 * 109.47279 * 60.00840 * 19 17 16 42 42 H 1.07999 * 119.58828 * 180.02562 * 22 21 20 43 43 H 1.07997 * 120.40363 * 180.02562 * 23 22 21 44 44 H 1.08001 * 120.79611 * 179.97438 * 24 23 22 45 45 H 1.09001 * 110.42885 * 280.39469 * 27 16 15 46 46 H 1.09002 * 110.42515 * 157.91605 * 27 16 15 47 47 H 1.09002 * 109.57285 * 247.05972 * 28 9 7 48 48 H 1.09002 * 109.57179 * 7.43269 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0544 -1.2228 0.2758 9 7 1.3697 -2.3628 -0.3427 10 6 1.8242 -3.6551 0.1885 11 6 2.0781 -4.6118 -0.9750 12 6 0.8172 -4.7068 -1.8386 13 6 0.4692 -3.3290 -2.3913 14 6 -0.7690 -3.4180 -3.3001 15 6 -0.2759 -2.9456 -4.6860 16 7 1.1854 -3.1914 -4.6673 17 6 1.9585 -3.6522 -5.6704 18 8 3.1496 -3.8019 -5.4983 19 6 1.3428 -3.9814 -7.0059 20 6 2.4138 -4.4735 -7.9451 21 7 2.6908 -5.7616 -8.0007 22 6 3.6195 -6.2374 -8.8066 23 6 4.3422 -5.3945 -9.6301 24 6 4.0802 -4.0339 -9.6019 25 6 3.0919 -3.5691 -8.7441 26 9 2.7992 -2.2515 -8.6870 27 6 1.6046 -2.8166 -3.2955 28 6 0.2169 -2.3418 -1.2549 29 1 -0.4850 0.8400 -0.0004 30 1 2.7467 -3.5143 0.7517 31 1 1.0565 -4.0725 0.8400 32 1 2.3290 -5.5992 -0.5876 33 1 2.9047 -4.2361 -1.5780 34 1 -0.0108 -5.0744 -1.2324 35 1 0.9947 -5.3950 -2.6650 36 1 -1.1263 -4.4463 -3.3548 37 1 -1.5578 -2.7620 -2.9321 38 1 -0.7491 -3.5280 -5.4766 39 1 -0.4809 -1.8835 -4.8205 40 1 0.5884 -4.7575 -6.8769 41 1 0.8772 -3.0878 -7.4216 42 1 3.8174 -7.2990 -8.8241 43 1 5.1012 -5.7916 -10.2879 44 1 4.6295 -3.3518 -10.2340 45 1 1.7004 -1.7342 -3.2093 46 1 2.5449 -3.3043 -3.0384 47 1 -0.6832 -2.6313 -0.7127 48 1 0.0926 -1.3388 -1.6633 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040357180.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:46 Heat of formation + Delta-G solvation = -37.269985 kcal Electronic energy + Delta-G solvation = -31435.860755 eV Core-core repulsion = 27211.937522 eV Total energy + Delta-G solvation = -4223.923233 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.08358 -41.62748 -40.98756 -39.61786 -37.31581 -34.89295 -34.27988 -33.15787 -32.73837 -31.82486 -30.17040 -29.63593 -27.28118 -26.85043 -24.65311 -24.48965 -23.98307 -23.50066 -21.95019 -20.35110 -19.64050 -18.76096 -18.63275 -18.31478 -18.30090 -17.40757 -16.97618 -16.87398 -16.60480 -16.21371 -15.78611 -15.58322 -15.40741 -14.96139 -14.85571 -14.72046 -14.61045 -14.36860 -14.24234 -14.16484 -14.04720 -13.66565 -13.29523 -13.19244 -13.00367 -12.92056 -12.86310 -12.68194 -12.44723 -12.44131 -12.09228 -11.95161 -11.76626 -11.40145 -11.17007 -11.04915 -11.01044 -10.83150 -10.64616 -10.53204 -9.89655 -9.75747 -8.65277 -7.87334 -5.30081 -0.14848 0.07848 1.43156 1.45841 1.53082 1.54232 1.89525 2.49647 2.62047 2.96581 3.19635 3.25396 3.44289 3.54425 3.68042 3.74689 3.81161 3.88339 3.95530 3.97707 4.26471 4.27722 4.29513 4.33612 4.38279 4.50957 4.53824 4.58139 4.66938 4.70213 4.76620 4.84294 4.90156 4.91497 4.95429 4.99816 5.07556 5.11073 5.16808 5.25655 5.31019 5.35102 5.50083 5.60240 5.61302 5.66678 5.77487 6.39904 6.56725 6.81076 7.05683 7.16750 7.87427 8.38817 9.18648 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.014194 B = 0.002980 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.217279 B = 9392.650933 C =10137.557364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.042 4.042 3 Si 0.955 3.045 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.274 1.274 7 C -0.258 4.258 8 H 0.057 0.943 9 N -0.610 5.610 10 C 0.142 3.858 11 C -0.130 4.130 12 C -0.086 4.086 13 C -0.087 4.087 14 C -0.119 4.119 15 C 0.100 3.900 16 N -0.620 5.620 17 C 0.535 3.465 18 O -0.590 6.590 19 C -0.083 4.083 20 C 0.102 3.898 21 N -0.476 5.476 22 C 0.084 3.916 23 C -0.133 4.133 24 C -0.111 4.111 25 C 0.033 3.967 26 F -0.139 7.139 27 C 0.137 3.863 28 C 0.200 3.800 29 H 0.251 0.749 30 H 0.046 0.954 31 H 0.020 0.980 32 H 0.078 0.922 33 H 0.041 0.959 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.118 0.882 39 H 0.076 0.924 40 H 0.141 0.859 41 H 0.130 0.870 42 H 0.195 0.805 43 H 0.187 0.813 44 H 0.172 0.828 45 H 0.042 0.958 46 H 0.056 0.944 47 H 0.005 0.995 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.299 -12.993 -21.557 25.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.238 4.238 3 Si 0.784 3.216 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.199 1.199 7 C -0.389 4.389 8 H 0.075 0.925 9 N -0.333 5.333 10 C 0.017 3.983 11 C -0.169 4.169 12 C -0.123 4.123 13 C -0.090 4.090 14 C -0.157 4.157 15 C -0.022 4.022 16 N -0.353 5.353 17 C 0.325 3.675 18 O -0.471 6.471 19 C -0.123 4.123 20 C -0.036 4.036 21 N -0.185 5.185 22 C -0.074 4.074 23 C -0.152 4.152 24 C -0.138 4.138 25 C 0.011 3.989 26 F -0.118 7.118 27 C 0.014 3.986 28 C 0.074 3.926 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.038 0.962 32 H 0.097 0.903 33 H 0.060 0.940 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.112 0.888 37 H 0.102 0.898 38 H 0.136 0.864 39 H 0.095 0.905 40 H 0.158 0.842 41 H 0.148 0.852 42 H 0.211 0.789 43 H 0.204 0.796 44 H 0.189 0.811 45 H 0.060 0.940 46 H 0.074 0.926 47 H 0.023 0.977 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.409 -13.488 -20.978 24.943 hybrid contribution 0.992 2.266 0.183 2.480 sum 1.400 -11.223 -20.795 23.672 Atomic orbital electron populations 1.70134 1.06095 1.25704 1.55387 1.25582 0.96019 1.00694 1.01467 0.85455 0.78264 0.80517 0.77383 1.21648 1.21684 1.19921 1.19393 0.92532 0.86152 1.40779 0.92547 1.44305 1.35406 1.01908 1.51656 1.20935 0.97064 0.86205 0.94139 1.21920 0.97808 0.99355 0.97792 1.21292 0.97603 0.94917 0.98503 1.21661 0.94758 0.96904 0.95652 1.22541 0.96516 1.03354 0.93297 1.22701 0.78148 1.02113 0.99234 1.49191 1.10704 1.63465 1.11906 1.20469 0.85773 0.75871 0.85420 1.90681 1.17289 1.55671 1.83423 1.20543 0.97179 1.05243 0.89290 1.20740 0.97585 0.89515 0.95798 1.67480 1.17615 1.13382 1.19977 1.23483 0.90518 1.02670 0.90699 1.22538 1.00682 0.91951 1.00001 1.22062 0.95478 0.98451 0.97759 1.18860 1.00110 0.78488 1.01403 1.91485 1.92525 1.32165 1.95617 1.22057 0.98203 0.98007 0.80323 1.20562 0.87491 0.96666 0.87840 0.94008 0.93576 0.96226 0.90331 0.94036 0.91282 0.92215 0.88781 0.89825 0.86415 0.90549 0.84155 0.85183 0.78864 0.79553 0.81056 0.93975 0.92574 0.97684 0.92366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.68 11.17 21.65 0.24 -53.44 16 2 C -0.04 -2.33 4.92 84.86 0.42 -1.92 16 3 Si 0.95 45.75 29.59 68.60 2.03 47.78 16 4 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 7 C -0.26 -14.43 9.59 84.03 0.81 -13.62 16 8 H 0.06 3.17 7.88 -2.91 -0.02 3.15 16 9 N -0.61 -30.63 2.83 -700.76 -1.99 -32.61 16 10 C 0.14 6.05 6.47 86.22 0.56 6.61 16 11 C -0.13 -4.65 5.86 30.55 0.18 -4.48 16 12 C -0.09 -2.80 4.48 30.46 0.14 -2.66 16 13 C -0.09 -3.10 0.68 -51.88 -0.04 -3.14 16 14 C -0.12 -3.13 6.29 31.39 0.20 -2.93 16 15 C 0.10 2.33 6.92 86.57 0.60 2.93 16 16 N -0.62 -19.73 3.32 -808.24 -2.68 -22.41 16 17 C 0.53 17.64 7.91 87.66 0.69 18.34 16 18 O -0.59 -25.04 16.30 -3.03 -0.05 -25.09 16 19 C -0.08 -1.92 4.80 29.10 0.14 -1.78 16 20 C 0.10 2.59 5.28 42.60 0.22 2.82 16 21 N -0.48 -11.46 10.27 -183.70 -1.89 -13.35 16 22 C 0.08 1.37 11.18 84.69 0.95 2.32 16 23 C -0.13 -1.66 10.11 22.35 0.23 -1.44 16 24 C -0.11 -1.87 10.16 22.51 0.23 -1.64 16 25 C 0.03 0.79 7.27 22.47 0.16 0.95 16 26 F -0.14 -3.64 16.49 44.97 0.74 -2.89 16 27 C 0.14 5.38 5.79 86.35 0.50 5.88 16 28 C 0.20 9.20 3.66 86.16 0.32 9.52 16 29 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 30 H 0.05 1.97 7.93 -2.39 -0.02 1.95 16 31 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.04 1.65 6.21 -2.39 -0.01 1.64 16 34 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.09 2.03 7.70 -2.39 -0.02 2.01 16 37 H 0.08 2.24 7.69 -2.39 -0.02 2.22 16 38 H 0.12 1.76 7.31 -2.38 -0.02 1.74 16 39 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.14 2.52 7.95 -2.39 -0.02 2.50 16 41 H 0.13 2.44 7.62 -2.39 -0.02 2.42 16 42 H 0.19 1.77 8.06 -2.91 -0.02 1.74 16 43 H 0.19 0.71 8.06 -2.91 -0.02 0.68 16 44 H 0.17 1.89 8.06 -2.91 -0.02 1.86 16 45 H 0.04 1.92 7.73 -2.39 -0.02 1.90 16 46 H 0.06 2.48 5.63 -2.39 -0.01 2.47 16 47 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 48 H 0.06 3.04 5.90 -2.39 -0.01 3.03 16 Total: -1.00 -76.56 383.58 3.67 -72.88 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 0.97 Total: 13.37 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: 6.30 Total: 15.77 kcal Atomic # 7 Polarization: -115.50 SS G_CDS: -6.31 Total: -121.82 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.05 Total: -25.09 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.74 Total: -2.89 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -76.56 3.67 -72.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040357180.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.612 kcal (2) G-P(sol) polarization free energy of solvation -76.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds