Wall clock time and date at job start Wed Apr 1 2020 04:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 119.99733 * 2 1 4 4 H 1.48494 * 109.46954 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47111 * 300.00449 * 3 2 1 6 6 H 1.48497 * 109.47183 * 60.00103 * 3 2 1 7 7 C 1.38807 * 120.00211 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00216 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99949 * 359.97438 * 7 2 1 10 10 C 1.47559 * 125.67428 * 0.04915 * 9 7 2 11 11 C 1.55191 * 105.00795 * 203.81733 * 10 9 7 12 12 C 1.53646 * 101.41198 * 324.51946 * 11 10 9 13 13 C 1.53093 * 111.77681 * 155.68439 * 12 11 10 14 14 C 1.54352 * 104.72526 * 100.54324 * 13 12 11 15 15 N 1.47612 * 107.05508 * 357.72257 * 14 13 12 16 16 C 1.34778 * 126.91727 * 204.96737 * 15 14 13 17 17 O 1.21277 * 119.99318 * 180.02562 * 16 15 14 18 18 C 1.50695 * 120.00119 * 0.02562 * 16 15 14 19 19 C 1.53001 * 109.47217 * 180.02562 * 18 16 15 20 20 C 1.50692 * 109.47364 * 179.97438 * 19 18 16 21 21 C 1.38240 * 120.40461 * 89.99812 * 20 19 18 22 22 N 1.31846 * 120.82029 * 179.97438 * 21 20 19 23 23 C 1.31874 * 121.75222 * 359.97438 * 22 21 20 24 24 C 1.38425 * 120.72480 * 359.97438 * 23 22 21 25 25 F 1.35099 * 120.44230 * 180.02562 * 24 23 22 26 26 C 1.38588 * 120.40745 * 269.72090 * 20 19 18 27 27 C 1.48404 * 106.15899 * 25.00064 * 15 14 13 28 28 C 1.47414 * 125.67407 * 180.02562 * 9 7 2 29 29 H 0.96993 * 120.00075 * 359.97438 * 1 2 3 30 30 H 1.08997 * 110.33533 * 322.69774 * 10 9 7 31 31 H 1.09002 * 110.33807 * 84.83163 * 10 9 7 32 32 H 1.09003 * 111.03727 * 206.48784 * 11 10 9 33 33 H 1.08994 * 111.03666 * 82.55342 * 11 10 9 34 34 H 1.09002 * 110.40771 * 341.69608 * 13 12 11 35 35 H 1.09002 * 110.40268 * 219.38422 * 13 12 11 36 36 H 1.09007 * 109.91678 * 117.07783 * 14 13 12 37 37 H 1.08999 * 109.91575 * 238.36625 * 14 13 12 38 38 H 1.09005 * 109.46924 * 299.99942 * 18 16 15 39 39 H 1.08992 * 109.47732 * 59.99854 * 18 16 15 40 40 H 1.09001 * 109.47211 * 300.00197 * 19 18 16 41 41 H 1.09002 * 109.46971 * 59.99278 * 19 18 16 42 42 H 1.07993 * 119.58845 * 359.95936 * 21 20 19 43 43 H 1.07996 * 119.63661 * 179.97438 * 23 22 21 44 44 H 1.08001 * 120.80166 * 359.97438 * 26 20 19 45 45 H 1.09001 * 110.68322 * 80.82797 * 27 15 14 46 46 H 1.09000 * 110.68339 * 203.99869 * 27 15 14 47 47 H 1.09005 * 109.98245 * 58.57767 * 28 9 7 48 48 H 1.08994 * 109.99064 * 297.27156 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1427 -2.5339 -0.0010 11 6 -0.4072 -3.9381 0.6045 12 6 0.7837 -4.7366 0.0522 13 6 1.1113 -5.9477 0.9294 14 6 0.4798 -7.1481 0.1927 15 7 -0.2086 -6.6119 -0.9979 16 6 -1.2454 -7.1702 -1.6536 17 8 -1.7171 -6.6175 -2.6246 18 6 -1.8182 -8.4812 -1.1803 19 6 -2.9764 -8.8907 -2.0925 20 6 -3.5488 -10.2020 -1.6196 21 6 -4.5769 -10.2240 -0.6956 22 7 -5.0842 -11.3665 -0.2766 23 6 -4.6380 -12.5269 -0.7166 24 6 -3.6113 -12.5844 -1.6433 25 9 -3.1589 -13.7763 -2.0906 26 6 -3.0551 -11.4005 -2.1099 27 6 0.4712 -5.3347 -1.3279 28 6 1.9329 -3.7312 -0.0005 29 1 -0.4850 0.8400 0.0004 30 1 -0.6002 -1.7623 0.6180 31 1 -0.5284 -2.4800 -1.0191 32 1 -1.3521 -4.3470 0.2465 33 1 -0.3847 -3.9051 1.6937 34 1 0.6671 -5.8322 1.9181 35 1 2.1905 -6.0770 1.0111 36 1 1.2580 -7.8480 -0.1121 37 1 -0.2381 -7.6473 0.8434 38 1 -1.0440 -9.2480 -1.2103 39 1 -2.1814 -8.3714 -0.1586 40 1 -3.7507 -8.1241 -2.0630 41 1 -2.6128 -9.0007 -3.1142 42 1 -4.9691 -9.2938 -0.3121 43 1 -5.0783 -13.4422 -0.3498 44 1 -2.2557 -11.4136 -2.8360 45 1 1.3910 -5.5202 -1.8826 46 1 -0.1933 -4.6790 -1.8906 47 1 2.5731 -3.8506 0.8737 48 1 2.5141 -3.8774 -0.9110 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041860000.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:36 Heat of formation + Delta-G solvation = -18.371675 kcal Electronic energy + Delta-G solvation = -29828.920940 eV Core-core repulsion = 25605.817199 eV Total energy + Delta-G solvation = -4223.103741 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.42696 -40.71703 -40.22662 -38.49997 -35.74250 -34.99094 -32.74524 -32.10874 -30.84803 -30.25830 -29.22651 -28.24016 -26.37726 -24.96995 -24.24024 -23.93400 -22.38278 -21.99818 -20.34568 -19.19614 -18.73880 -17.88906 -17.78262 -17.33627 -17.01349 -16.65097 -16.26165 -16.11331 -15.45261 -14.97991 -14.67598 -14.35902 -14.29308 -14.02611 -13.98434 -13.69010 -13.52874 -13.43875 -13.06382 -12.87598 -12.60761 -12.48222 -12.30543 -12.11956 -11.79445 -11.71089 -11.43614 -11.33271 -11.17620 -10.93743 -10.79880 -10.27338 -10.25438 -10.08300 -10.05575 -9.97693 -9.84414 -9.73692 -9.48788 -9.32455 -8.65690 -8.63463 -6.84194 -5.65533 -3.07397 0.41351 0.58315 2.61133 2.90447 3.15781 3.39296 3.44594 3.47293 3.51646 3.94398 4.11356 4.24547 4.39747 4.43563 4.48735 4.62109 4.66523 4.69373 4.84624 4.93441 5.01380 5.14546 5.21911 5.26916 5.31678 5.36648 5.41764 5.47612 5.51010 5.73991 5.76630 5.80014 5.86123 5.91510 5.97931 6.03436 6.13823 6.14619 6.30332 6.34565 6.53457 6.62590 6.72729 6.82310 7.33380 7.52309 7.57277 7.62103 7.85677 8.14417 8.35246 9.21236 9.82032 10.47047 11.38388 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.028143 B = 0.001837 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.690941 B =15236.790756 C =15501.923638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.012 4.012 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.222 4.222 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.153 3.847 11 C -0.128 4.128 12 C -0.082 4.082 13 C -0.119 4.119 14 C 0.102 3.898 15 N -0.619 5.619 16 C 0.529 3.471 17 O -0.541 6.541 18 C -0.131 4.131 19 C -0.064 4.064 20 C -0.100 4.100 21 C 0.094 3.906 22 N -0.454 5.454 23 C 0.067 3.933 24 C 0.050 3.950 25 F -0.131 7.131 26 C -0.108 4.108 27 C 0.124 3.876 28 C 0.151 3.849 29 H 0.251 0.749 30 H 0.105 0.895 31 H 0.012 0.988 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.166 0.834 43 H 0.166 0.834 44 H 0.148 0.852 45 H 0.070 0.930 46 H 0.088 0.912 47 H 0.029 0.971 48 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.270 -25.550 0.195 26.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.208 4.208 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.350 4.350 8 H 0.096 0.904 9 N -0.331 5.331 10 C 0.028 3.972 11 C -0.167 4.167 12 C -0.084 4.084 13 C -0.158 4.158 14 C -0.021 4.021 15 N -0.353 5.353 16 C 0.318 3.682 17 O -0.418 6.418 18 C -0.170 4.170 19 C -0.103 4.103 20 C -0.102 4.102 21 C -0.064 4.064 22 N -0.161 5.161 23 C -0.091 4.091 24 C 0.029 3.971 25 F -0.109 7.109 26 C -0.134 4.134 27 C 0.002 3.998 28 C 0.025 3.975 29 H 0.062 0.938 30 H 0.122 0.878 31 H 0.030 0.970 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.106 0.894 42 H 0.183 0.817 43 H 0.184 0.816 44 H 0.166 0.834 45 H 0.088 0.912 46 H 0.107 0.893 47 H 0.047 0.953 48 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -6.301 -25.111 0.215 25.890 hybrid contribution 1.371 0.482 -0.699 1.613 sum -4.930 -24.629 -0.484 25.122 Atomic orbital electron populations 1.69818 1.04881 1.24664 1.57617 1.24799 0.95731 0.97742 1.02491 0.86005 0.78624 0.83666 0.77238 1.20544 1.21780 1.21771 1.19110 0.90504 0.82429 1.42982 0.90431 1.44635 1.01897 0.99622 1.86902 1.21982 0.84545 0.92396 0.98267 1.22846 0.95325 0.98714 0.99804 1.21602 0.98432 0.94395 0.93940 1.22383 1.01143 0.93257 0.98996 1.22204 0.96205 0.96927 0.86763 1.48968 1.32359 1.24147 1.29841 1.20135 0.78705 0.86459 0.82924 1.90736 1.59872 1.64122 1.27080 1.21619 0.98736 0.95379 1.01316 1.20344 0.97722 0.92449 0.99753 1.20895 0.96728 0.95582 0.96963 1.22895 0.93054 0.96691 0.93734 1.67773 1.26795 0.97880 1.23682 1.22932 0.93964 0.97655 0.94598 1.18835 0.97927 0.81548 0.98835 1.91536 1.88065 1.43429 1.87888 1.21640 1.00585 0.90679 1.00499 1.22379 0.96833 0.83796 0.96779 1.21058 0.92784 0.85554 0.98087 0.93778 0.87758 0.96992 0.92491 0.91978 0.90367 0.90403 0.91617 0.91065 0.88924 0.88588 0.88933 0.89405 0.81684 0.81645 0.83401 0.91209 0.89321 0.95327 0.95883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.88 10.10 55.49 0.56 -26.32 16 2 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 3 Si 0.91 22.01 29.55 -169.99 -5.02 16.98 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.22 -6.11 10.28 -15.06 -0.15 -6.27 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.60 -15.14 3.41 -170.42 -0.58 -15.73 16 10 C 0.15 3.68 5.77 -2.30 -0.01 3.67 16 11 C -0.13 -2.36 5.97 -25.24 -0.15 -2.51 16 12 C -0.08 -1.32 0.68 -153.91 -0.11 -1.42 16 13 C -0.12 -1.39 6.06 -25.97 -0.16 -1.55 16 14 C 0.10 0.99 6.77 -2.72 -0.02 0.97 16 15 N -0.62 -7.93 3.31 -170.03 -0.56 -8.49 16 16 C 0.53 6.79 7.89 -10.99 -0.09 6.71 16 17 O -0.54 -9.15 16.21 5.56 0.09 -9.06 16 18 C -0.13 -1.05 4.76 -27.88 -0.13 -1.19 16 19 C -0.06 -0.50 4.66 -27.89 -0.13 -0.63 16 20 C -0.10 -0.71 5.15 -104.50 -0.54 -1.25 16 21 C 0.09 0.71 10.86 -17.54 -0.19 0.52 16 22 N -0.45 -4.02 10.36 -13.20 -0.14 -4.15 16 23 C 0.07 0.51 11.17 -17.46 -0.20 0.31 16 24 C 0.05 0.38 7.35 -39.27 -0.29 0.09 16 25 F -0.13 -1.07 17.28 2.25 0.04 -1.03 16 26 C -0.11 -0.76 9.85 -39.21 -0.39 -1.14 16 27 C 0.12 1.94 5.88 -2.67 -0.02 1.92 16 28 C 0.15 2.98 6.43 -3.65 -0.02 2.95 16 29 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.10 2.85 5.89 -51.93 -0.31 2.54 16 31 H 0.01 0.32 8.10 -51.93 -0.42 -0.10 16 32 H 0.06 1.01 8.00 -51.93 -0.42 0.59 16 33 H 0.06 1.11 7.80 -51.93 -0.40 0.71 16 34 H 0.08 0.88 7.62 -51.93 -0.40 0.48 16 35 H 0.08 0.83 7.81 -51.93 -0.41 0.42 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.55 7.55 -51.93 -0.39 0.15 16 38 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.10 0.65 7.91 -51.93 -0.41 0.24 16 40 H 0.09 0.77 8.05 -51.93 -0.42 0.36 16 41 H 0.09 0.73 8.05 -51.93 -0.42 0.31 16 42 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.17 0.88 8.06 -52.49 -0.42 0.45 16 44 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 45 H 0.07 1.04 7.82 -51.93 -0.41 0.64 16 46 H 0.09 1.66 7.63 -51.93 -0.40 1.27 16 47 H 0.03 0.55 7.78 -51.93 -0.40 0.15 16 48 H 0.02 0.46 7.63 -51.93 -0.40 0.06 16 LS Contribution 390.79 15.07 5.89 5.89 Total: -1.00 -33.03 390.79 -9.66 -42.69 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -7.25 Total: -1.52 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -2.68 Total: 0.75 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.72 Total: -54.70 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.09 Total: -9.06 kcal Atomic # 9 Polarization: -1.07 SS G_CDS: 0.04 Total: -1.03 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.03 -9.66 -42.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041860000.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.317 kcal (2) G-P(sol) polarization free energy of solvation -33.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds