Wall clock time and date at job start Wed Apr 1 2020 04:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86793 * 120.00247 * 2 1 4 4 H 1.48503 * 109.47395 * 269.99957 * 3 2 1 5 5 H 1.48502 * 109.46917 * 29.99899 * 3 2 1 6 6 H 1.48504 * 109.47427 * 149.99551 * 3 2 1 7 7 C 1.38818 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00305 * 170.87155 * 7 2 1 9 9 N 1.36940 * 119.99645 * 350.86205 * 7 2 1 10 10 C 1.48143 * 127.80780 * 164.66415 * 9 7 2 11 11 C 1.54383 * 104.64062 * 140.44088 * 10 9 7 12 12 C 1.54247 * 104.89476 * 23.91552 * 11 10 9 13 13 C 1.48113 * 127.81447 * 344.62570 * 9 7 2 14 14 C 1.47116 * 112.24066 * 237.45406 * 12 11 10 15 15 C 1.52512 * 114.27431 * 301.69569 * 14 12 11 16 16 C 1.50884 * 109.30765 * 275.13827 * 15 14 12 17 17 C 1.53916 * 110.12374 * 91.91730 * 16 15 14 18 18 N 1.47572 * 112.20795 * 319.40188 * 17 16 15 19 19 C 1.34775 * 118.62655 * 137.78609 * 18 17 16 20 20 O 1.21565 * 120.00046 * 342.09022 * 19 18 17 21 21 C 1.47724 * 119.99597 * 162.09787 * 19 18 17 22 22 C 1.40159 * 120.52827 * 212.71889 * 21 19 18 23 23 C 1.38150 * 118.32479 * 180.02562 * 22 21 19 24 24 C 1.38752 * 119.28385 * 359.97438 * 23 22 21 25 25 F 1.35101 * 119.49334 * 179.97438 * 24 23 22 26 26 N 1.32148 * 121.01780 * 0.02562 * 24 23 22 27 27 C 1.31696 * 121.83611 * 359.69427 * 26 24 23 28 28 C 1.44637 * 122.74528 * 317.80803 * 18 17 16 29 29 H 0.96994 * 119.99956 * 0.02562 * 1 2 3 30 30 H 1.09007 * 110.40453 * 21.65550 * 10 9 7 31 31 H 1.08998 * 110.50582 * 259.28606 * 10 9 7 32 32 H 1.09003 * 110.35701 * 265.05586 * 11 10 9 33 33 H 1.08999 * 110.35274 * 142.76618 * 11 10 9 34 34 H 1.08996 * 110.41794 * 100.64868 * 13 9 7 35 35 H 1.09002 * 110.41003 * 338.21222 * 13 9 7 36 36 H 1.08997 * 108.52138 * 180.46237 * 14 12 11 37 37 H 1.08997 * 108.52628 * 62.94044 * 14 12 11 38 38 H 1.09005 * 109.50025 * 35.08325 * 15 14 12 39 39 H 1.08997 * 109.50535 * 155.18269 * 15 14 12 40 40 H 1.09006 * 109.35907 * 212.11510 * 16 15 14 41 41 H 1.08997 * 109.36551 * 331.71353 * 16 15 14 42 42 H 1.09001 * 108.94123 * 198.69560 * 17 16 15 43 43 H 1.09004 * 108.86738 * 80.05125 * 17 16 15 44 44 H 1.08003 * 120.83715 * 0.02589 * 22 21 19 45 45 H 1.08002 * 120.35568 * 179.97438 * 23 22 21 46 46 H 1.08004 * 119.70267 * 180.31213 * 27 26 24 47 47 H 1.09001 * 109.47001 * 330.47834 * 28 18 17 48 48 H 1.09003 * 109.46891 * 210.49690 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0800 -1.2081 -0.1489 9 7 1.3385 -2.3806 0.1873 10 6 1.8218 -3.7546 -0.0837 11 6 1.2853 -4.5963 1.0941 12 6 0.0602 -3.8161 1.6133 13 6 -0.0351 -2.5699 0.7080 14 6 0.1856 -3.4656 3.0366 15 6 0.3685 -4.6628 3.9635 16 6 -0.9837 -5.2328 4.3148 17 6 -1.3653 -6.3429 3.3193 18 7 -0.9982 -5.9985 1.9321 19 6 -0.4495 -6.9521 1.1536 20 8 0.0316 -7.9473 1.6595 21 6 -0.4327 -6.7878 -0.3144 22 6 -0.5320 -7.9036 -1.1568 23 6 -0.5111 -7.6976 -2.5227 24 6 -0.3940 -6.4046 -3.0123 25 9 -0.3725 -6.1983 -4.3473 26 7 -0.3021 -5.3719 -2.1929 27 6 -0.3232 -5.5193 -0.8844 28 6 -1.2021 -4.6802 1.3732 29 1 -0.4850 0.8400 -0.0004 30 1 2.9115 -3.7775 -0.1017 31 1 1.4192 -4.1217 -1.0277 32 1 2.0407 -4.6799 1.8755 33 1 0.9859 -5.5854 0.7477 34 1 -0.7312 -2.7479 -0.1116 35 1 -0.3446 -1.7010 1.2887 36 1 -0.7114 -2.9262 3.3407 37 1 1.0418 -2.8016 3.1556 38 1 0.9648 -5.4244 3.4608 39 1 0.8767 -4.3443 4.8736 40 1 -0.9504 -5.6469 5.3226 41 1 -1.7310 -4.4403 4.2764 42 1 -2.4415 -6.5086 3.3696 43 1 -0.8527 -7.2622 3.6029 44 1 -0.6227 -8.8993 -0.7484 45 1 -0.5850 -8.5339 -3.2020 46 1 -0.2508 -4.6505 -0.2468 47 1 -2.0605 -4.2106 1.8536 48 1 -1.3865 -4.7642 0.3021 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045923722.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:16 Heat of formation + Delta-G solvation = 51.963134 kcal Electronic energy + Delta-G solvation = -33285.641905 eV Core-core repulsion = 29065.588110 eV Total energy + Delta-G solvation = -4220.053794 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.08354 -41.97314 -39.41839 -38.49883 -36.09901 -34.20995 -33.09504 -32.84881 -31.20145 -30.82247 -28.36458 -27.66658 -26.11598 -25.00527 -24.34204 -23.92564 -22.83844 -21.10202 -20.50191 -19.62425 -18.52151 -18.21248 -17.86316 -17.01886 -16.79920 -16.34721 -16.05512 -15.66999 -15.45810 -14.78166 -14.53463 -14.37242 -14.15642 -13.93117 -13.71271 -13.39202 -13.33008 -13.30570 -13.11653 -12.77171 -12.60454 -12.24764 -12.07109 -11.78383 -11.38086 -11.25585 -11.08142 -10.87011 -10.82738 -10.69464 -10.37373 -10.22595 -10.15398 -10.03715 -10.00092 -9.88854 -9.84286 -9.68431 -9.53718 -9.02076 -8.68307 -8.50364 -6.86014 -5.80501 -3.13394 0.44046 0.95340 2.59381 2.89329 3.38169 3.44266 3.44775 3.45463 3.52044 4.26096 4.42628 4.46149 4.61455 4.68260 4.79465 4.89941 4.95697 5.00879 5.13951 5.17988 5.30726 5.40694 5.48281 5.51885 5.60364 5.62338 5.64963 5.70576 5.73462 5.82618 5.85150 5.90005 6.02929 6.08015 6.20167 6.27703 6.39149 6.43447 6.48819 6.57652 6.61700 6.69524 6.76020 6.93675 7.20430 7.30047 7.46144 7.53344 7.68951 8.03057 8.18404 9.09878 9.72845 10.48406 11.33687 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.009510 B = 0.005161 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2943.707705 B = 5424.017895 C = 7750.321516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.004 4.004 3 Si 0.910 3.090 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.223 4.223 8 H 0.076 0.924 9 N -0.587 5.587 10 C 0.109 3.891 11 C -0.146 4.146 12 C -0.101 4.101 13 C 0.163 3.837 14 C -0.091 4.091 15 C -0.119 4.119 16 C -0.129 4.129 17 C 0.114 3.886 18 N -0.595 5.595 19 C 0.572 3.428 20 O -0.538 6.538 21 C -0.212 4.212 22 C 0.005 3.995 23 C -0.209 4.209 24 C 0.325 3.675 25 F -0.109 7.109 26 N -0.502 5.502 27 C 0.139 3.861 28 C 0.074 3.926 29 H 0.254 0.746 30 H 0.046 0.954 31 H 0.036 0.964 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.026 0.974 35 H 0.095 0.905 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.089 0.911 44 H 0.153 0.847 45 H 0.153 0.847 46 H 0.231 0.769 47 H 0.086 0.914 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.510 -15.020 3.829 16.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.201 4.201 3 Si 0.740 3.260 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.351 4.351 8 H 0.093 0.907 9 N -0.310 5.310 10 C -0.017 4.017 11 C -0.185 4.185 12 C -0.104 4.104 13 C 0.036 3.964 14 C -0.129 4.129 15 C -0.156 4.156 16 C -0.167 4.167 17 C -0.007 4.007 18 N -0.326 5.326 19 C 0.360 3.640 20 O -0.416 6.416 21 C -0.218 4.218 22 C -0.021 4.021 23 C -0.231 4.231 24 C 0.172 3.828 25 F -0.088 7.088 26 N -0.215 5.215 27 C -0.017 4.017 28 C -0.049 4.049 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.044 0.956 35 H 0.113 0.887 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.108 0.892 44 H 0.170 0.830 45 H 0.170 0.830 46 H 0.246 0.754 47 H 0.104 0.896 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.227 -14.425 3.680 15.778 hybrid contribution 0.357 0.182 -0.138 0.424 sum -4.870 -14.242 3.542 15.463 Atomic orbital electron populations 1.69859 1.04970 1.25364 1.55943 1.24841 0.95609 0.97802 1.01827 0.86161 0.78747 0.83422 0.77668 1.21496 1.21612 1.20660 1.18973 0.90767 0.82252 1.43120 0.90663 1.44825 1.13003 0.99842 1.73308 1.22003 0.97898 0.87221 0.94623 1.23142 0.97785 0.97734 0.99791 1.21465 0.93242 0.98050 0.97677 1.21691 0.87563 0.93561 0.93580 1.20230 1.02757 0.97119 0.92778 1.21110 0.96538 0.98627 0.99338 1.21772 0.98525 0.98303 0.98148 1.21859 0.99568 0.99333 0.79975 1.47520 1.61788 1.10880 1.12411 1.17821 0.77441 0.82978 0.85722 1.90756 1.44753 1.31203 1.74890 1.21111 1.09735 0.95630 0.95284 1.21468 0.90102 0.99109 0.91462 1.21739 1.07822 0.96699 0.96806 1.18627 0.94949 0.90051 0.79198 1.91641 1.92768 1.95930 1.28461 1.67386 1.15308 1.33541 1.05311 1.25310 0.88081 0.98472 0.89809 1.22923 0.99468 0.82011 1.00507 0.93593 0.93499 0.94678 0.91504 0.92307 0.95630 0.88662 0.92255 0.91241 0.91427 0.92173 0.90995 0.91342 0.91943 0.89250 0.82955 0.82958 0.75407 0.89589 0.87971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.63 10.86 55.49 0.60 -25.03 16 2 C 0.00 -0.10 5.40 -17.43 -0.09 -0.20 16 3 Si 0.91 21.54 29.56 -169.99 -5.03 16.52 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.22 -6.01 10.35 -15.06 -0.16 -6.16 16 8 H 0.08 2.00 7.85 -52.49 -0.41 1.58 16 9 N -0.59 -14.21 3.38 -168.93 -0.57 -14.78 16 10 C 0.11 2.26 6.66 -2.41 -0.02 2.24 16 11 C -0.15 -2.54 4.39 -25.35 -0.11 -2.65 16 12 C -0.10 -1.69 0.54 -155.01 -0.08 -1.77 16 13 C 0.16 3.52 4.60 -2.46 -0.01 3.51 16 14 C -0.09 -1.40 3.85 -29.81 -0.11 -1.52 16 15 C -0.12 -1.51 5.35 -28.04 -0.15 -1.66 16 16 C -0.13 -1.34 5.71 -27.32 -0.16 -1.50 16 17 C 0.11 1.27 6.17 -2.98 -0.02 1.25 16 18 N -0.59 -7.89 2.04 -173.70 -0.35 -8.24 16 19 C 0.57 8.43 5.38 -12.39 -0.07 8.36 16 20 O -0.54 -8.95 16.19 5.31 0.09 -8.86 16 21 C -0.21 -3.03 5.12 -104.83 -0.54 -3.56 16 22 C 0.00 0.05 9.74 -38.89 -0.38 -0.33 16 23 C -0.21 -2.34 10.07 -39.42 -0.40 -2.74 16 24 C 0.33 4.71 8.41 -17.23 -0.14 4.57 16 25 F -0.11 -1.57 17.29 2.25 0.04 -1.53 16 26 N -0.50 -8.62 9.88 -15.48 -0.15 -8.77 16 27 C 0.14 2.24 5.46 -17.14 -0.09 2.14 16 28 C 0.07 1.05 4.14 -4.06 -0.02 1.03 16 29 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.04 0.75 5.50 -51.93 -0.29 0.47 16 32 H 0.07 1.17 6.97 -51.93 -0.36 0.81 16 33 H 0.06 0.98 2.60 -51.93 -0.14 0.85 16 34 H 0.03 0.59 6.97 -51.93 -0.36 0.23 16 35 H 0.10 2.31 6.25 -51.93 -0.32 1.99 16 36 H 0.06 0.87 7.37 -51.93 -0.38 0.49 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.07 0.97 6.05 -51.93 -0.31 0.66 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.69 7.31 -51.93 -0.38 0.31 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.09 1.06 6.91 -51.93 -0.36 0.71 16 44 H 0.15 1.46 8.02 -52.48 -0.42 1.04 16 45 H 0.15 1.18 8.06 -52.49 -0.42 0.75 16 46 H 0.23 3.93 0.60 -52.48 -0.03 3.90 16 47 H 0.09 1.08 8.09 -51.93 -0.42 0.66 16 48 H 0.10 1.53 3.48 -57.02 -0.20 1.33 16 LS Contribution 352.89 15.07 5.32 5.32 Total: -1.00 -30.44 352.89 -8.66 -39.11 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -6.06 Total: 5.27 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -2.54 Total: 1.01 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -0.48 Total: -56.83 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.09 Total: -8.86 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.44 -8.66 -39.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045923722.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.068 kcal (2) G-P(sol) polarization free energy of solvation -30.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds