Wall clock time and date at job start Wed Apr 1 2020 04:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86793 * 120.00247 * 2 1 4 4 H 1.48503 * 109.47395 * 269.99957 * 3 2 1 5 5 H 1.48502 * 109.46917 * 29.99899 * 3 2 1 6 6 H 1.48504 * 109.47427 * 149.99551 * 3 2 1 7 7 C 1.38818 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00305 * 170.87155 * 7 2 1 9 9 N 1.36940 * 119.99645 * 350.86205 * 7 2 1 10 10 C 1.48143 * 127.80780 * 164.66415 * 9 7 2 11 11 C 1.54383 * 104.64062 * 140.44088 * 10 9 7 12 12 C 1.54247 * 104.89476 * 23.91552 * 11 10 9 13 13 C 1.48113 * 127.81447 * 344.62570 * 9 7 2 14 14 C 1.47116 * 112.24066 * 237.45406 * 12 11 10 15 15 C 1.52512 * 114.27431 * 301.69569 * 14 12 11 16 16 C 1.50884 * 109.30765 * 275.13827 * 15 14 12 17 17 C 1.53916 * 110.12374 * 91.91730 * 16 15 14 18 18 N 1.47572 * 112.20795 * 319.40188 * 17 16 15 19 19 C 1.34775 * 118.62655 * 137.78609 * 18 17 16 20 20 O 1.21565 * 120.00046 * 342.09022 * 19 18 17 21 21 C 1.47724 * 119.99597 * 162.09787 * 19 18 17 22 22 C 1.40159 * 120.52827 * 212.71889 * 21 19 18 23 23 C 1.38150 * 118.32479 * 180.02562 * 22 21 19 24 24 C 1.38752 * 119.28385 * 359.97438 * 23 22 21 25 25 F 1.35101 * 119.49334 * 179.97438 * 24 23 22 26 26 N 1.32148 * 121.01780 * 0.02562 * 24 23 22 27 27 C 1.31696 * 121.83611 * 359.69427 * 26 24 23 28 28 C 1.44637 * 122.74528 * 317.80803 * 18 17 16 29 29 H 0.96994 * 119.99956 * 0.02562 * 1 2 3 30 30 H 1.09007 * 110.40453 * 21.65550 * 10 9 7 31 31 H 1.08998 * 110.50582 * 259.28606 * 10 9 7 32 32 H 1.09003 * 110.35701 * 265.05586 * 11 10 9 33 33 H 1.08999 * 110.35274 * 142.76618 * 11 10 9 34 34 H 1.08996 * 110.41794 * 100.64868 * 13 9 7 35 35 H 1.09002 * 110.41003 * 338.21222 * 13 9 7 36 36 H 1.08997 * 108.52138 * 180.46237 * 14 12 11 37 37 H 1.08997 * 108.52628 * 62.94044 * 14 12 11 38 38 H 1.09005 * 109.50025 * 35.08325 * 15 14 12 39 39 H 1.08997 * 109.50535 * 155.18269 * 15 14 12 40 40 H 1.09006 * 109.35907 * 212.11510 * 16 15 14 41 41 H 1.08997 * 109.36551 * 331.71353 * 16 15 14 42 42 H 1.09001 * 108.94123 * 198.69560 * 17 16 15 43 43 H 1.09004 * 108.86738 * 80.05125 * 17 16 15 44 44 H 1.08003 * 120.83715 * 0.02589 * 22 21 19 45 45 H 1.08002 * 120.35568 * 179.97438 * 23 22 21 46 46 H 1.08004 * 119.70267 * 180.31213 * 27 26 24 47 47 H 1.09001 * 109.47001 * 330.47834 * 28 18 17 48 48 H 1.09003 * 109.46891 * 210.49690 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0800 -1.2081 -0.1489 9 7 1.3385 -2.3806 0.1873 10 6 1.8218 -3.7546 -0.0837 11 6 1.2853 -4.5963 1.0941 12 6 0.0602 -3.8161 1.6133 13 6 -0.0351 -2.5699 0.7080 14 6 0.1856 -3.4656 3.0366 15 6 0.3685 -4.6628 3.9635 16 6 -0.9837 -5.2328 4.3148 17 6 -1.3653 -6.3429 3.3193 18 7 -0.9982 -5.9985 1.9321 19 6 -0.4495 -6.9521 1.1536 20 8 0.0316 -7.9473 1.6595 21 6 -0.4327 -6.7878 -0.3144 22 6 -0.5320 -7.9036 -1.1568 23 6 -0.5111 -7.6976 -2.5227 24 6 -0.3940 -6.4046 -3.0123 25 9 -0.3725 -6.1983 -4.3473 26 7 -0.3021 -5.3719 -2.1929 27 6 -0.3232 -5.5193 -0.8844 28 6 -1.2021 -4.6802 1.3732 29 1 -0.4850 0.8400 -0.0004 30 1 2.9115 -3.7775 -0.1017 31 1 1.4192 -4.1217 -1.0277 32 1 2.0407 -4.6799 1.8755 33 1 0.9859 -5.5854 0.7477 34 1 -0.7312 -2.7479 -0.1116 35 1 -0.3446 -1.7010 1.2887 36 1 -0.7114 -2.9262 3.3407 37 1 1.0418 -2.8016 3.1556 38 1 0.9648 -5.4244 3.4608 39 1 0.8767 -4.3443 4.8736 40 1 -0.9504 -5.6469 5.3226 41 1 -1.7310 -4.4403 4.2764 42 1 -2.4415 -6.5086 3.3696 43 1 -0.8527 -7.2622 3.6029 44 1 -0.6227 -8.8993 -0.7484 45 1 -0.5850 -8.5339 -3.2020 46 1 -0.2508 -4.6505 -0.2468 47 1 -2.0605 -4.2106 1.8536 48 1 -1.3865 -4.7642 0.3021 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045923722.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:16 Heat of formation + Delta-G solvation = 34.067132 kcal Electronic energy + Delta-G solvation = -33286.417934 eV Core-core repulsion = 29065.588110 eV Total energy + Delta-G solvation = -4220.829823 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.18199 -43.18051 -40.56334 -39.81126 -37.43836 -35.32243 -34.79906 -33.92483 -32.82342 -31.97081 -30.07148 -28.91928 -27.50441 -26.35217 -25.74545 -25.06820 -24.10688 -22.48538 -21.99258 -20.70381 -19.84233 -19.33898 -19.00508 -18.83437 -17.94171 -17.62642 -17.16122 -16.93430 -16.76056 -16.39864 -15.88006 -15.51559 -15.32707 -15.24820 -14.95431 -14.79454 -14.58280 -14.39485 -14.29957 -14.14721 -13.86846 -13.59070 -13.39919 -13.27305 -12.84066 -12.82323 -12.60601 -12.52193 -12.23107 -12.05156 -11.87687 -11.80698 -11.62211 -11.39104 -11.28211 -11.27672 -11.13186 -11.08939 -10.73011 -10.65936 -10.11029 -9.63727 -8.83799 -7.88061 -5.22408 -0.64795 -0.05816 1.45679 1.47360 1.47874 1.56873 1.84404 2.36763 2.43564 2.50011 3.16882 3.30086 3.38409 3.48491 3.56904 3.61147 3.76519 3.82832 3.89188 4.01699 4.10476 4.17477 4.21056 4.26178 4.33107 4.43213 4.55169 4.60987 4.63370 4.68442 4.74214 4.79015 4.82107 4.89837 4.93136 4.99627 5.15432 5.19631 5.23125 5.31232 5.35905 5.39272 5.46047 5.50432 5.57833 5.65369 5.73083 6.17563 6.22511 6.42992 6.91221 7.05635 7.70890 8.48925 9.24838 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.009510 B = 0.005161 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2943.707705 B = 5424.017895 C = 7750.321516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.053 4.053 3 Si 0.972 3.028 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.273 1.273 7 C -0.239 4.239 8 H 0.072 0.928 9 N -0.609 5.609 10 C 0.108 3.892 11 C -0.129 4.129 12 C -0.086 4.086 13 C 0.173 3.827 14 C -0.088 4.088 15 C -0.110 4.110 16 C -0.124 4.124 17 C 0.109 3.891 18 N -0.589 5.589 19 C 0.572 3.428 20 O -0.555 6.555 21 C -0.217 4.217 22 C 0.013 3.987 23 C -0.180 4.180 24 C 0.306 3.694 25 F -0.115 7.115 26 N -0.545 5.545 27 C 0.124 3.876 28 C 0.083 3.917 29 H 0.250 0.750 30 H 0.040 0.960 31 H 0.032 0.968 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.006 0.994 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.037 0.963 38 H 0.052 0.948 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.183 0.817 45 H 0.196 0.804 46 H 0.213 0.787 47 H 0.106 0.894 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.284 -17.440 5.015 19.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.248 4.248 3 Si 0.800 3.200 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.198 1.198 7 C -0.368 4.368 8 H 0.090 0.910 9 N -0.333 5.333 10 C -0.018 4.018 11 C -0.168 4.168 12 C -0.089 4.089 13 C 0.047 3.953 14 C -0.126 4.126 15 C -0.148 4.148 16 C -0.162 4.162 17 C -0.011 4.011 18 N -0.319 5.319 19 C 0.361 3.639 20 O -0.435 6.435 21 C -0.223 4.223 22 C -0.013 4.013 23 C -0.201 4.201 24 C 0.153 3.847 25 F -0.094 7.094 26 N -0.260 5.260 27 C -0.031 4.031 28 C -0.040 4.040 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.024 0.976 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.117 0.883 41 H 0.095 0.905 42 H 0.106 0.894 43 H 0.104 0.896 44 H 0.201 0.799 45 H 0.213 0.787 46 H 0.228 0.772 47 H 0.124 0.876 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.002 -16.870 4.882 18.560 hybrid contribution 0.614 0.884 -0.593 1.229 sum -5.388 -15.986 4.289 17.406 Atomic orbital electron populations 1.70032 1.06081 1.25617 1.56975 1.25560 0.96459 1.00607 1.02136 0.85194 0.77826 0.79600 0.77344 1.21611 1.21563 1.19788 1.19257 0.91024 0.83706 1.42764 0.91048 1.45065 1.13948 1.00387 1.73922 1.22079 0.97506 0.86260 0.95939 1.22974 0.97909 0.97744 0.98176 1.21214 0.94395 0.95958 0.97358 1.21484 0.85972 0.94560 0.93255 1.20216 1.01741 0.98103 0.92492 1.21028 0.98222 0.96776 0.98755 1.21759 0.96825 0.98306 0.99272 1.22097 1.01123 0.99311 0.78559 1.47545 1.61098 1.09952 1.13345 1.17889 0.77216 0.82941 0.85893 1.90751 1.45628 1.31939 1.75200 1.21192 1.09848 0.95717 0.95497 1.21860 0.88535 0.99567 0.91311 1.22107 1.04573 0.96202 0.97201 1.18954 0.95947 0.90940 0.78852 1.91626 1.92941 1.96066 1.28727 1.67190 1.16816 1.35781 1.06198 1.24976 0.89873 0.98817 0.89473 1.22691 0.98392 0.82233 1.00724 0.94057 0.94168 0.95084 0.91668 0.91019 0.97635 0.91694 0.91430 0.94436 0.92902 0.91016 0.88330 0.90499 0.89365 0.89626 0.79930 0.78696 0.77185 0.87562 0.88591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.66 10.86 21.65 0.24 -54.43 16 2 C -0.05 -2.99 5.40 84.86 0.46 -2.53 16 3 Si 0.97 45.42 29.56 68.60 2.03 47.45 16 4 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 5 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.24 -13.38 10.35 84.03 0.87 -12.51 16 8 H 0.07 3.93 7.85 -2.91 -0.02 3.91 16 9 N -0.61 -30.97 3.38 -688.36 -2.33 -33.30 16 10 C 0.11 4.67 6.66 86.53 0.58 5.25 16 11 C -0.13 -4.59 4.39 31.49 0.14 -4.45 16 12 C -0.09 -2.92 0.54 -52.51 -0.03 -2.95 16 13 C 0.17 7.87 4.60 86.52 0.40 8.27 16 14 C -0.09 -2.69 3.85 28.60 0.11 -2.58 16 15 C -0.11 -2.61 5.35 29.74 0.16 -2.45 16 16 C -0.12 -2.15 5.71 30.22 0.17 -1.97 16 17 C 0.11 2.08 6.17 86.48 0.53 2.61 16 18 N -0.59 -14.42 2.04 -821.75 -1.67 -16.09 16 19 C 0.57 15.70 5.38 86.75 0.47 16.16 16 20 O -0.56 -17.10 16.19 -3.92 -0.06 -17.16 16 21 C -0.22 -5.86 5.12 -20.00 -0.10 -5.96 16 22 C 0.01 0.26 9.74 22.72 0.22 0.48 16 23 C -0.18 -3.48 10.07 22.37 0.23 -3.26 16 24 C 0.31 8.62 8.41 84.77 0.71 9.34 16 25 F -0.11 -3.26 17.29 44.97 0.78 -2.48 16 26 N -0.55 -19.09 9.88 -202.90 -2.00 -21.10 16 27 C 0.12 4.02 5.46 85.02 0.46 4.48 16 28 C 0.08 2.29 4.14 87.36 0.36 2.65 16 29 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 30 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 31 H 0.03 1.40 5.50 -2.39 -0.01 1.38 16 32 H 0.06 2.31 6.97 -2.39 -0.02 2.30 16 33 H 0.07 2.39 2.60 -2.39 -0.01 2.38 16 34 H 0.01 0.28 6.97 -2.39 -0.02 0.27 16 35 H 0.06 3.32 6.25 -2.39 -0.01 3.31 16 36 H 0.07 1.94 7.37 -2.39 -0.02 1.92 16 37 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.05 1.43 6.05 -2.38 -0.01 1.41 16 39 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 41 H 0.08 1.26 7.31 -2.39 -0.02 1.24 16 42 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.09 1.76 6.91 -2.38 -0.02 1.74 16 44 H 0.18 2.66 8.02 -2.91 -0.02 2.64 16 45 H 0.20 2.06 8.06 -2.91 -0.02 2.04 16 46 H 0.21 7.44 0.60 -2.91 0.00 7.44 16 47 H 0.11 2.50 8.09 -2.39 -0.02 2.48 16 48 H 0.10 2.89 3.48 -7.17 -0.02 2.87 16 Total: -1.00 -69.46 352.89 3.71 -65.74 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 1.00 Total: 20.78 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: 5.74 Total: 10.59 kcal Atomic # 7 Polarization: -119.15 SS G_CDS: -5.77 Total: -124.92 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.06 Total: -17.16 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.78 Total: -2.48 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -69.46 3.71 -65.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045923722.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.812 kcal (2) G-P(sol) polarization free energy of solvation -69.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds