Wall clock time and date at job start Wed Apr 1 2020 04:50:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31616 * 1
3 3 Si 1.86793 * 120.00247 * 2 1
4 4 H 1.48503 * 109.47395 * 269.99957 * 3 2 1
5 5 H 1.48502 * 109.46917 * 29.99899 * 3 2 1
6 6 H 1.48504 * 109.47427 * 149.99551 * 3 2 1
7 7 C 1.38818 * 120.00089 * 180.02562 * 2 1 3
8 8 H 1.08000 * 120.00305 * 170.87155 * 7 2 1
9 9 N 1.36940 * 119.99645 * 350.86205 * 7 2 1
10 10 C 1.48143 * 127.80780 * 164.66415 * 9 7 2
11 11 C 1.54383 * 104.64062 * 140.44088 * 10 9 7
12 12 C 1.54247 * 104.89476 * 23.91552 * 11 10 9
13 13 C 1.48113 * 127.81447 * 344.62570 * 9 7 2
14 14 C 1.47116 * 112.24066 * 237.45406 * 12 11 10
15 15 C 1.52512 * 114.27431 * 301.69569 * 14 12 11
16 16 C 1.50884 * 109.30765 * 275.13827 * 15 14 12
17 17 C 1.53916 * 110.12374 * 91.91730 * 16 15 14
18 18 N 1.47572 * 112.20795 * 319.40188 * 17 16 15
19 19 C 1.34775 * 118.62655 * 137.78609 * 18 17 16
20 20 O 1.21565 * 120.00046 * 342.09022 * 19 18 17
21 21 C 1.47724 * 119.99597 * 162.09787 * 19 18 17
22 22 C 1.40159 * 120.52827 * 212.71889 * 21 19 18
23 23 C 1.38150 * 118.32479 * 180.02562 * 22 21 19
24 24 C 1.38752 * 119.28385 * 359.97438 * 23 22 21
25 25 F 1.35101 * 119.49334 * 179.97438 * 24 23 22
26 26 N 1.32148 * 121.01780 * 0.02562 * 24 23 22
27 27 C 1.31696 * 121.83611 * 359.69427 * 26 24 23
28 28 C 1.44637 * 122.74528 * 317.80803 * 18 17 16
29 29 H 0.96994 * 119.99956 * 0.02562 * 1 2 3
30 30 H 1.09007 * 110.40453 * 21.65550 * 10 9 7
31 31 H 1.08998 * 110.50582 * 259.28606 * 10 9 7
32 32 H 1.09003 * 110.35701 * 265.05586 * 11 10 9
33 33 H 1.08999 * 110.35274 * 142.76618 * 11 10 9
34 34 H 1.08996 * 110.41794 * 100.64868 * 13 9 7
35 35 H 1.09002 * 110.41003 * 338.21222 * 13 9 7
36 36 H 1.08997 * 108.52138 * 180.46237 * 14 12 11
37 37 H 1.08997 * 108.52628 * 62.94044 * 14 12 11
38 38 H 1.09005 * 109.50025 * 35.08325 * 15 14 12
39 39 H 1.08997 * 109.50535 * 155.18269 * 15 14 12
40 40 H 1.09006 * 109.35907 * 212.11510 * 16 15 14
41 41 H 1.08997 * 109.36551 * 331.71353 * 16 15 14
42 42 H 1.09001 * 108.94123 * 198.69560 * 17 16 15
43 43 H 1.09004 * 108.86738 * 80.05125 * 17 16 15
44 44 H 1.08003 * 120.83715 * 0.02589 * 22 21 19
45 45 H 1.08002 * 120.35568 * 179.97438 * 23 22 21
46 46 H 1.08004 * 119.70267 * 180.31213 * 27 26 24
47 47 H 1.09001 * 109.47001 * 330.47834 * 28 18 17
48 48 H 1.09003 * 109.46891 * 210.49690 * 28 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6176 0.0000
4 1 2.4978 2.0464 -1.4001
5 1 1.4476 2.6526 0.7000
6 1 3.5477 1.4401 0.7001
7 6 2.0103 -1.2022 -0.0005
8 1 3.0800 -1.2081 -0.1489
9 7 1.3385 -2.3806 0.1873
10 6 1.8218 -3.7546 -0.0837
11 6 1.2853 -4.5963 1.0941
12 6 0.0602 -3.8161 1.6133
13 6 -0.0351 -2.5699 0.7080
14 6 0.1856 -3.4656 3.0366
15 6 0.3685 -4.6628 3.9635
16 6 -0.9837 -5.2328 4.3148
17 6 -1.3653 -6.3429 3.3193
18 7 -0.9982 -5.9985 1.9321
19 6 -0.4495 -6.9521 1.1536
20 8 0.0316 -7.9473 1.6595
21 6 -0.4327 -6.7878 -0.3144
22 6 -0.5320 -7.9036 -1.1568
23 6 -0.5111 -7.6976 -2.5227
24 6 -0.3940 -6.4046 -3.0123
25 9 -0.3725 -6.1983 -4.3473
26 7 -0.3021 -5.3719 -2.1929
27 6 -0.3232 -5.5193 -0.8844
28 6 -1.2021 -4.6802 1.3732
29 1 -0.4850 0.8400 -0.0004
30 1 2.9115 -3.7775 -0.1017
31 1 1.4192 -4.1217 -1.0277
32 1 2.0407 -4.6799 1.8755
33 1 0.9859 -5.5854 0.7477
34 1 -0.7312 -2.7479 -0.1116
35 1 -0.3446 -1.7010 1.2887
36 1 -0.7114 -2.9262 3.3407
37 1 1.0418 -2.8016 3.1556
38 1 0.9648 -5.4244 3.4608
39 1 0.8767 -4.3443 4.8736
40 1 -0.9504 -5.6469 5.3226
41 1 -1.7310 -4.4403 4.2764
42 1 -2.4415 -6.5086 3.3696
43 1 -0.8527 -7.2622 3.6029
44 1 -0.6227 -8.8993 -0.7484
45 1 -0.5850 -8.5339 -3.2020
46 1 -0.2508 -4.6505 -0.2468
47 1 -2.0605 -4.2106 1.8536
48 1 -1.3865 -4.7642 0.3021
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001045923722.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:50:16
Heat of formation + Delta-G solvation = 34.067132 kcal
Electronic energy + Delta-G solvation = -33286.417934 eV
Core-core repulsion = 29065.588110 eV
Total energy + Delta-G solvation = -4220.829823 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.175 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-50.18199 -43.18051 -40.56334 -39.81126 -37.43836 -35.32243 -34.79906 -33.92483
-32.82342 -31.97081 -30.07148 -28.91928 -27.50441 -26.35217 -25.74545 -25.06820
-24.10688 -22.48538 -21.99258 -20.70381 -19.84233 -19.33898 -19.00508 -18.83437
-17.94171 -17.62642 -17.16122 -16.93430 -16.76056 -16.39864 -15.88006 -15.51559
-15.32707 -15.24820 -14.95431 -14.79454 -14.58280 -14.39485 -14.29957 -14.14721
-13.86846 -13.59070 -13.39919 -13.27305 -12.84066 -12.82323 -12.60601 -12.52193
-12.23107 -12.05156 -11.87687 -11.80698 -11.62211 -11.39104 -11.28211 -11.27672
-11.13186 -11.08939 -10.73011 -10.65936 -10.11029 -9.63727 -8.83799 -7.88061
-5.22408 -0.64795 -0.05816 1.45679 1.47360 1.47874 1.56873 1.84404
2.36763 2.43564 2.50011 3.16882 3.30086 3.38409 3.48491 3.56904
3.61147 3.76519 3.82832 3.89188 4.01699 4.10476 4.17477 4.21056
4.26178 4.33107 4.43213 4.55169 4.60987 4.63370 4.68442 4.74214
4.79015 4.82107 4.89837 4.93136 4.99627 5.15432 5.19631 5.23125
5.31232 5.35905 5.39272 5.46047 5.50432 5.57833 5.65369 5.73083
6.17563 6.22511 6.42992 6.91221 7.05635 7.70890 8.48925 9.24838
Molecular weight = 347.18amu
Principal moments of inertia in cm(-1)
A = 0.009510 B = 0.005161 C = 0.003612
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2943.707705 B = 5424.017895 C = 7750.321516
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.939 5.939
2 C -0.053 4.053
3 Si 0.972 3.028
4 H -0.289 1.289
5 H -0.290 1.290
6 H -0.273 1.273
7 C -0.239 4.239
8 H 0.072 0.928
9 N -0.609 5.609
10 C 0.108 3.892
11 C -0.129 4.129
12 C -0.086 4.086
13 C 0.173 3.827
14 C -0.088 4.088
15 C -0.110 4.110
16 C -0.124 4.124
17 C 0.109 3.891
18 N -0.589 5.589
19 C 0.572 3.428
20 O -0.555 6.555
21 C -0.217 4.217
22 C 0.013 3.987
23 C -0.180 4.180
24 C 0.306 3.694
25 F -0.115 7.115
26 N -0.545 5.545
27 C 0.124 3.876
28 C 0.083 3.917
29 H 0.250 0.750
30 H 0.040 0.960
31 H 0.032 0.968
32 H 0.065 0.935
33 H 0.072 0.928
34 H 0.006 0.994
35 H 0.065 0.935
36 H 0.067 0.933
37 H 0.037 0.963
38 H 0.052 0.948
39 H 0.071 0.929
40 H 0.098 0.902
41 H 0.076 0.924
42 H 0.088 0.912
43 H 0.085 0.915
44 H 0.183 0.817
45 H 0.196 0.804
46 H 0.213 0.787
47 H 0.106 0.894
48 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.284 -17.440 5.015 19.204
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.587 5.587
2 C -0.248 4.248
3 Si 0.800 3.200
4 H -0.216 1.216
5 H -0.216 1.216
6 H -0.198 1.198
7 C -0.368 4.368
8 H 0.090 0.910
9 N -0.333 5.333
10 C -0.018 4.018
11 C -0.168 4.168
12 C -0.089 4.089
13 C 0.047 3.953
14 C -0.126 4.126
15 C -0.148 4.148
16 C -0.162 4.162
17 C -0.011 4.011
18 N -0.319 5.319
19 C 0.361 3.639
20 O -0.435 6.435
21 C -0.223 4.223
22 C -0.013 4.013
23 C -0.201 4.201
24 C 0.153 3.847
25 F -0.094 7.094
26 N -0.260 5.260
27 C -0.031 4.031
28 C -0.040 4.040
29 H 0.059 0.941
30 H 0.058 0.942
31 H 0.049 0.951
32 H 0.083 0.917
33 H 0.090 0.910
34 H 0.024 0.976
35 H 0.083 0.917
36 H 0.086 0.914
37 H 0.056 0.944
38 H 0.071 0.929
39 H 0.090 0.910
40 H 0.117 0.883
41 H 0.095 0.905
42 H 0.106 0.894
43 H 0.104 0.896
44 H 0.201 0.799
45 H 0.213 0.787
46 H 0.228 0.772
47 H 0.124 0.876
48 H 0.114 0.886
Dipole moment (debyes) X Y Z Total
from point charges -6.002 -16.870 4.882 18.560
hybrid contribution 0.614 0.884 -0.593 1.229
sum -5.388 -15.986 4.289 17.406
Atomic orbital electron populations
1.70032 1.06081 1.25617 1.56975 1.25560 0.96459 1.00607 1.02136
0.85194 0.77826 0.79600 0.77344 1.21611 1.21563 1.19788 1.19257
0.91024 0.83706 1.42764 0.91048 1.45065 1.13948 1.00387 1.73922
1.22079 0.97506 0.86260 0.95939 1.22974 0.97909 0.97744 0.98176
1.21214 0.94395 0.95958 0.97358 1.21484 0.85972 0.94560 0.93255
1.20216 1.01741 0.98103 0.92492 1.21028 0.98222 0.96776 0.98755
1.21759 0.96825 0.98306 0.99272 1.22097 1.01123 0.99311 0.78559
1.47545 1.61098 1.09952 1.13345 1.17889 0.77216 0.82941 0.85893
1.90751 1.45628 1.31939 1.75200 1.21192 1.09848 0.95717 0.95497
1.21860 0.88535 0.99567 0.91311 1.22107 1.04573 0.96202 0.97201
1.18954 0.95947 0.90940 0.78852 1.91626 1.92941 1.96066 1.28727
1.67190 1.16816 1.35781 1.06198 1.24976 0.89873 0.98817 0.89473
1.22691 0.98392 0.82233 1.00724 0.94057 0.94168 0.95084 0.91668
0.91019 0.97635 0.91694 0.91430 0.94436 0.92902 0.91016 0.88330
0.90499 0.89365 0.89626 0.79930 0.78696 0.77185 0.87562 0.88591
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -54.66 10.86 21.65 0.24 -54.43 16
2 C -0.05 -2.99 5.40 84.86 0.46 -2.53 16
3 Si 0.97 45.42 29.56 68.60 2.03 47.45 16
4 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16
5 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16
6 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16
7 C -0.24 -13.38 10.35 84.03 0.87 -12.51 16
8 H 0.07 3.93 7.85 -2.91 -0.02 3.91 16
9 N -0.61 -30.97 3.38 -688.36 -2.33 -33.30 16
10 C 0.11 4.67 6.66 86.53 0.58 5.25 16
11 C -0.13 -4.59 4.39 31.49 0.14 -4.45 16
12 C -0.09 -2.92 0.54 -52.51 -0.03 -2.95 16
13 C 0.17 7.87 4.60 86.52 0.40 8.27 16
14 C -0.09 -2.69 3.85 28.60 0.11 -2.58 16
15 C -0.11 -2.61 5.35 29.74 0.16 -2.45 16
16 C -0.12 -2.15 5.71 30.22 0.17 -1.97 16
17 C 0.11 2.08 6.17 86.48 0.53 2.61 16
18 N -0.59 -14.42 2.04 -821.75 -1.67 -16.09 16
19 C 0.57 15.70 5.38 86.75 0.47 16.16 16
20 O -0.56 -17.10 16.19 -3.92 -0.06 -17.16 16
21 C -0.22 -5.86 5.12 -20.00 -0.10 -5.96 16
22 C 0.01 0.26 9.74 22.72 0.22 0.48 16
23 C -0.18 -3.48 10.07 22.37 0.23 -3.26 16
24 C 0.31 8.62 8.41 84.77 0.71 9.34 16
25 F -0.11 -3.26 17.29 44.97 0.78 -2.48 16
26 N -0.55 -19.09 9.88 -202.90 -2.00 -21.10 16
27 C 0.12 4.02 5.46 85.02 0.46 4.48 16
28 C 0.08 2.29 4.14 87.36 0.36 2.65 16
29 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16
30 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16
31 H 0.03 1.40 5.50 -2.39 -0.01 1.38 16
32 H 0.06 2.31 6.97 -2.39 -0.02 2.30 16
33 H 0.07 2.39 2.60 -2.39 -0.01 2.38 16
34 H 0.01 0.28 6.97 -2.39 -0.02 0.27 16
35 H 0.06 3.32 6.25 -2.39 -0.01 3.31 16
36 H 0.07 1.94 7.37 -2.39 -0.02 1.92 16
37 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16
38 H 0.05 1.43 6.05 -2.38 -0.01 1.41 16
39 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16
40 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16
41 H 0.08 1.26 7.31 -2.39 -0.02 1.24 16
42 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16
43 H 0.09 1.76 6.91 -2.38 -0.02 1.74 16
44 H 0.18 2.66 8.02 -2.91 -0.02 2.64 16
45 H 0.20 2.06 8.06 -2.91 -0.02 2.04 16
46 H 0.21 7.44 0.60 -2.91 0.00 7.44 16
47 H 0.11 2.50 8.09 -2.39 -0.02 2.48 16
48 H 0.10 2.89 3.48 -7.17 -0.02 2.87 16
Total: -1.00 -69.46 352.89 3.71 -65.74
By element:
Atomic # 1 Polarization: 19.78 SS G_CDS: 1.00 Total: 20.78 kcal
Atomic # 6 Polarization: 4.86 SS G_CDS: 5.74 Total: 10.59 kcal
Atomic # 7 Polarization: -119.15 SS G_CDS: -5.77 Total: -124.92 kcal
Atomic # 8 Polarization: -17.10 SS G_CDS: -0.06 Total: -17.16 kcal
Atomic # 9 Polarization: -3.26 SS G_CDS: 0.78 Total: -2.48 kcal
Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal
Total: -69.46 3.71 -65.74 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001045923722.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 99.812 kcal
(2) G-P(sol) polarization free energy of solvation -69.457 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.355 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.713 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.745 kcal
(6) G-S(sol) free energy of system = (1) + (5) 34.067 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds