Wall clock time and date at job start Wed Apr 1 2020 04:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00458 * 2 1 4 4 H 1.48502 * 109.47014 * 239.99943 * 3 2 1 5 5 H 1.48498 * 109.47204 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47757 * 119.99596 * 3 2 1 7 7 C 1.38817 * 119.99591 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99896 * 170.22111 * 7 2 1 9 9 N 1.37017 * 120.00116 * 350.21894 * 7 2 1 10 10 C 1.48256 * 127.61221 * 168.53962 * 9 7 2 11 11 C 1.54861 * 103.02837 * 137.65135 * 10 9 7 12 12 C 1.53823 * 103.72866 * 35.32808 * 11 10 9 13 13 C 1.47922 * 127.81567 * 348.69990 * 9 7 2 14 14 C 1.50284 * 112.22432 * 225.18373 * 12 11 10 15 15 C 1.52363 * 111.53471 * 321.49554 * 14 12 11 16 16 C 1.47172 * 114.89666 * 273.81895 * 15 14 12 17 17 C 1.54635 * 110.16283 * 64.56328 * 16 15 14 18 18 N 1.44419 * 109.64670 * 290.32716 * 17 16 15 19 19 C 1.35129 * 118.20285 * 269.54237 * 18 17 16 20 20 O 1.21548 * 119.99846 * 174.52131 * 19 18 17 21 21 C 1.47849 * 119.99656 * 354.51598 * 19 18 17 22 22 C 1.39558 * 120.54913 * 26.45782 * 21 19 18 23 23 N 1.31652 * 120.62085 * 179.97438 * 22 21 19 24 24 C 1.31940 * 121.91032 * 0.02562 * 23 22 21 25 25 C 1.38539 * 121.04567 * 359.97438 * 24 23 22 26 26 F 1.35098 * 120.37598 * 180.02562 * 25 24 23 27 27 C 1.38612 * 119.25139 * 0.02562 * 25 24 23 28 28 C 1.47230 * 123.28622 * 90.29453 * 18 17 16 29 29 H 0.97007 * 119.99255 * 0.02562 * 1 2 3 30 30 H 1.08664 * 110.88564 * 19.19182 * 10 9 7 31 31 H 1.08869 * 110.31890 * 255.41158 * 10 9 7 32 32 H 1.08883 * 109.50279 * 276.82067 * 11 10 9 33 33 H 1.08706 * 110.48773 * 154.31499 * 11 10 9 34 34 H 1.09131 * 110.48062 * 93.52615 * 13 9 7 35 35 H 1.09152 * 110.30122 * 331.83382 * 13 9 7 36 36 H 1.09290 * 109.61595 * 200.02264 * 14 12 11 37 37 H 1.09648 * 108.91014 * 81.71661 * 14 12 11 38 38 H 1.09531 * 108.01552 * 153.69593 * 15 14 12 39 39 H 1.08601 * 110.25059 * 36.26096 * 15 14 12 40 40 H 1.08864 * 109.31129 * 303.98846 * 16 15 14 41 41 H 1.09065 * 109.32514 * 184.70458 * 16 15 14 42 42 H 1.09037 * 109.50271 * 169.95195 * 17 16 15 43 43 H 1.09017 * 109.60446 * 50.51228 * 17 16 15 44 44 H 1.07997 * 119.68611 * 359.97438 * 22 21 19 45 45 H 1.07997 * 119.47874 * 180.27533 * 24 23 22 46 46 H 1.07998 * 120.86909 * 180.02562 * 27 25 24 47 47 H 1.09332 * 108.77416 * 73.14449 * 28 18 17 48 48 H 1.09362 * 108.72366 * 190.40686 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0784 -1.2092 -0.1583 9 7 1.3400 -2.3801 0.2026 10 6 1.8526 -3.7576 0.0087 11 6 1.3079 -4.5105 1.2475 12 6 -0.0680 -3.8669 1.4900 13 6 -0.0551 -2.5630 0.6591 14 6 -0.2994 -3.5495 2.9406 15 6 0.2633 -4.6367 3.8477 16 6 -0.6466 -5.7657 4.0995 17 6 -0.9254 -6.5293 2.7841 18 7 -1.7344 -5.7122 1.9104 19 6 -3.0785 -5.8225 1.9963 20 8 -3.7917 -5.0808 1.3493 21 6 -3.6814 -6.8454 2.8773 22 6 -2.9911 -7.3141 3.9959 23 7 -3.5268 -8.2246 4.7816 24 6 -4.7240 -8.7286 4.5499 25 6 -5.4740 -8.3165 3.4605 26 9 -6.6986 -8.8413 3.2364 27 6 -4.9539 -7.3597 2.6030 28 6 -1.1677 -4.7794 0.9224 29 1 -0.4849 0.8402 -0.0004 30 1 2.9391 -3.7689 -0.0005 31 1 1.4448 -4.1876 -0.9046 32 1 1.9709 -4.3435 2.0949 33 1 1.2089 -5.5719 1.0345 34 1 -0.7272 -2.6573 -0.1954 35 1 -0.3629 -1.7216 1.2826 36 1 -1.3707 -3.4378 3.1254 37 1 0.1918 -2.5986 3.1790 38 1 0.5020 -4.1811 4.8147 39 1 1.1855 -5.0325 3.4326 40 1 -1.5820 -5.3895 4.5102 41 1 -0.1889 -6.4442 4.8205 42 1 -1.4497 -7.4590 3.0070 43 1 0.0179 -6.7648 2.2909 44 1 -2.0082 -6.9263 4.2192 45 1 -5.1275 -9.4706 5.2228 46 1 -5.5163 -7.0192 1.7461 47 1 -0.7509 -5.3563 0.0924 48 1 -1.9735 -4.1549 0.5266 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045931241.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:33 Heat of formation + Delta-G solvation = 30.731950 kcal Electronic energy + Delta-G solvation = -31826.253033 eV Core-core repulsion = 27605.278585 eV Total energy + Delta-G solvation = -4220.974448 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.36989 -41.54331 -39.75992 -38.38435 -36.63639 -33.83788 -33.28032 -32.83048 -31.72402 -30.58374 -28.38797 -27.56214 -26.34319 -25.05560 -24.57257 -23.93787 -22.88684 -21.65617 -20.32146 -19.75880 -18.38004 -17.95659 -17.80964 -17.39780 -16.83360 -16.44107 -16.29878 -15.96599 -15.51861 -14.85336 -14.76643 -14.48184 -14.16950 -14.07781 -13.84624 -13.82493 -13.67147 -13.31016 -13.20141 -12.85303 -12.49735 -12.22980 -12.01709 -11.83299 -11.64416 -11.39881 -11.00376 -10.87725 -10.75538 -10.69523 -10.53685 -10.33927 -10.29264 -10.07975 -9.93776 -9.92025 -9.76876 -9.69624 -9.53364 -9.31109 -8.67370 -8.57748 -6.85576 -5.76172 -3.08823 0.15832 0.56477 2.52761 2.79084 3.26342 3.39234 3.44155 3.45483 3.59466 3.90727 4.10890 4.27128 4.35171 4.48203 4.55788 4.66993 4.70154 4.85981 5.08773 5.18470 5.21367 5.26485 5.31731 5.40688 5.41698 5.52049 5.55108 5.70463 5.72936 5.79974 5.86979 6.00726 6.04938 6.08898 6.17260 6.18292 6.24825 6.37453 6.49752 6.58340 6.67306 6.76136 6.83858 6.96982 7.23624 7.28211 7.39590 7.54852 7.74663 8.00811 8.22179 9.14210 9.77000 10.52552 11.37516 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.021968 B = 0.002684 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.299944 B =10429.002170 C =10938.913167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.006 4.006 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.226 4.226 8 H 0.076 0.924 9 N -0.597 5.597 10 C 0.122 3.878 11 C -0.125 4.125 12 C -0.088 4.088 13 C 0.173 3.827 14 C -0.090 4.090 15 C -0.121 4.121 16 C -0.150 4.150 17 C 0.078 3.922 18 N -0.585 5.585 19 C 0.552 3.448 20 O -0.523 6.523 21 C -0.152 4.152 22 C 0.077 3.923 23 N -0.459 5.459 24 C 0.090 3.910 25 C 0.041 3.959 26 F -0.127 7.127 27 C -0.055 4.055 28 C 0.123 3.877 29 H 0.254 0.746 30 H 0.048 0.952 31 H 0.021 0.979 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.021 0.979 35 H 0.083 0.917 36 H 0.055 0.945 37 H 0.070 0.930 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.213 0.787 45 H 0.171 0.829 46 H 0.158 0.842 47 H 0.064 0.936 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.546 -19.385 10.000 22.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.355 4.355 8 H 0.094 0.906 9 N -0.321 5.321 10 C -0.005 4.005 11 C -0.164 4.164 12 C -0.090 4.090 13 C 0.047 3.953 14 C -0.128 4.128 15 C -0.159 4.159 16 C -0.188 4.188 17 C -0.045 4.045 18 N -0.316 5.316 19 C 0.339 3.661 20 O -0.400 6.400 21 C -0.157 4.157 22 C -0.079 4.079 23 N -0.166 5.166 24 C -0.068 4.068 25 C 0.019 3.981 26 F -0.105 7.105 27 C -0.083 4.083 28 C 0.002 3.998 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.039 0.961 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.039 0.961 35 H 0.102 0.898 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.110 0.890 43 H 0.108 0.892 44 H 0.228 0.772 45 H 0.188 0.812 46 H 0.176 0.824 47 H 0.082 0.918 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.490 -18.990 10.306 22.293 hybrid contribution -0.403 1.000 -0.835 1.364 sum -5.893 -17.990 9.471 21.168 Atomic orbital electron populations 1.69900 1.04939 1.25423 1.55935 1.24835 0.95601 0.97791 1.02092 0.86241 0.78556 0.83290 0.77921 1.21116 1.21612 1.21185 1.18959 0.90923 0.82506 1.43071 0.90613 1.44912 1.10557 0.99710 1.76884 1.21813 0.97060 0.87186 0.94421 1.22783 0.96162 0.97436 0.99987 1.21527 0.93349 0.97844 0.96318 1.21689 0.86486 0.92071 0.95079 1.20890 1.00664 0.98143 0.93118 1.20448 0.99403 0.95769 1.00238 1.21450 1.01250 0.99142 0.96966 1.22379 0.97384 0.93582 0.91202 1.47516 1.04728 1.41216 1.38161 1.18166 0.82803 0.83306 0.81809 1.90822 1.60765 1.43190 1.45192 1.20982 0.95652 1.00214 0.98858 1.25224 1.01488 0.91856 0.89344 1.67943 1.10469 1.09891 1.28317 1.23194 0.90527 0.98514 0.94563 1.18645 0.83144 0.97974 0.98330 1.91551 1.39653 1.84931 1.94381 1.21774 0.94326 0.93003 0.99149 1.22280 0.97811 0.91129 0.88578 0.93564 0.93319 0.96144 0.91410 0.92748 0.96081 0.89831 0.92594 0.91140 0.92643 0.90893 0.91151 0.89997 0.89022 0.89232 0.77161 0.81156 0.82411 0.91810 0.88514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.68 10.82 55.49 0.60 -26.08 16 2 C -0.01 -0.17 5.41 -17.43 -0.09 -0.27 16 3 Si 0.91 21.83 29.56 -169.99 -5.03 16.81 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.23 -6.16 10.36 -15.02 -0.16 -6.32 16 8 H 0.08 1.99 7.85 -52.49 -0.41 1.58 16 9 N -0.60 -14.64 3.37 -168.56 -0.57 -15.21 16 10 C 0.12 2.38 7.28 -2.09 -0.02 2.36 16 11 C -0.12 -1.94 4.66 -25.32 -0.12 -2.06 16 12 C -0.09 -1.48 0.62 -154.19 -0.10 -1.58 16 13 C 0.17 3.97 4.81 -2.41 -0.01 3.96 16 14 C -0.09 -1.41 4.35 -28.41 -0.12 -1.53 16 15 C -0.12 -1.39 4.82 -29.86 -0.14 -1.54 16 16 C -0.15 -1.35 4.03 -28.67 -0.12 -1.47 16 17 C 0.08 0.74 4.91 -4.29 -0.02 0.72 16 18 N -0.59 -7.51 2.27 -173.91 -0.39 -7.90 16 19 C 0.55 7.81 7.47 -12.17 -0.09 7.72 16 20 O -0.52 -9.39 15.91 5.32 0.08 -9.31 16 21 C -0.15 -1.73 5.58 -104.83 -0.58 -2.32 16 22 C 0.08 0.75 8.19 -17.14 -0.14 0.61 16 23 N -0.46 -4.42 10.34 -12.86 -0.13 -4.56 16 24 C 0.09 0.76 11.16 -17.39 -0.19 0.57 16 25 C 0.04 0.38 7.33 -39.33 -0.29 0.09 16 26 F -0.13 -1.20 17.28 2.25 0.04 -1.16 16 27 C -0.06 -0.59 9.71 -38.80 -0.38 -0.97 16 28 C 0.12 1.91 4.95 -3.25 -0.02 1.90 16 29 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 30 H 0.05 0.91 8.11 -52.12 -0.42 0.49 16 31 H 0.02 0.40 8.13 -52.00 -0.42 -0.02 16 32 H 0.07 1.04 6.29 -51.99 -0.33 0.71 16 33 H 0.05 0.70 6.53 -52.09 -0.34 0.36 16 34 H 0.02 0.53 7.30 -51.85 -0.38 0.16 16 35 H 0.08 2.19 5.99 -51.84 -0.31 1.88 16 36 H 0.06 0.91 7.77 -51.77 -0.40 0.51 16 37 H 0.07 1.28 7.70 -51.56 -0.40 0.88 16 38 H 0.05 0.61 8.17 -51.63 -0.42 0.19 16 39 H 0.07 0.82 5.37 -52.15 -0.28 0.54 16 40 H 0.07 0.68 6.93 -52.01 -0.36 0.32 16 41 H 0.08 0.54 8.12 -51.89 -0.42 0.12 16 42 H 0.09 0.73 4.46 -51.91 -0.23 0.50 16 43 H 0.09 0.78 6.87 -51.92 -0.36 0.43 16 44 H 0.21 1.78 1.97 -53.31 -0.10 1.68 16 45 H 0.17 0.93 8.06 -52.49 -0.42 0.50 16 46 H 0.16 1.64 7.94 -52.49 -0.42 1.23 16 47 H 0.06 0.95 7.64 -51.74 -0.40 0.55 16 48 H 0.10 1.78 6.10 -51.72 -0.32 1.47 16 LS Contribution 362.15 15.07 5.46 5.46 Total: -1.00 -31.65 362.15 -8.80 -40.45 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -6.27 Total: 1.64 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -2.59 Total: -0.13 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: -0.50 Total: -53.75 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.08 Total: -9.31 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.04 Total: -1.16 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.65 -8.80 -40.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045931241.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.184 kcal (2) G-P(sol) polarization free energy of solvation -31.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds