Wall clock time and date at job start Wed Apr 1 2020 04:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00458 * 2 1 4 4 H 1.48502 * 109.47014 * 239.99943 * 3 2 1 5 5 H 1.48498 * 109.47204 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47757 * 119.99596 * 3 2 1 7 7 C 1.38817 * 119.99591 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99896 * 170.22111 * 7 2 1 9 9 N 1.37017 * 120.00116 * 350.21894 * 7 2 1 10 10 C 1.48256 * 127.61221 * 168.53962 * 9 7 2 11 11 C 1.54861 * 103.02837 * 137.65135 * 10 9 7 12 12 C 1.53823 * 103.72866 * 35.32808 * 11 10 9 13 13 C 1.47922 * 127.81567 * 348.69990 * 9 7 2 14 14 C 1.50284 * 112.22432 * 225.18373 * 12 11 10 15 15 C 1.52363 * 111.53471 * 321.49554 * 14 12 11 16 16 C 1.47172 * 114.89666 * 273.81895 * 15 14 12 17 17 C 1.54635 * 110.16283 * 64.56328 * 16 15 14 18 18 N 1.44419 * 109.64670 * 290.32716 * 17 16 15 19 19 C 1.35129 * 118.20285 * 269.54237 * 18 17 16 20 20 O 1.21548 * 119.99846 * 174.52131 * 19 18 17 21 21 C 1.47849 * 119.99656 * 354.51598 * 19 18 17 22 22 C 1.39558 * 120.54913 * 26.45782 * 21 19 18 23 23 N 1.31652 * 120.62085 * 179.97438 * 22 21 19 24 24 C 1.31940 * 121.91032 * 0.02562 * 23 22 21 25 25 C 1.38539 * 121.04567 * 359.97438 * 24 23 22 26 26 F 1.35098 * 120.37598 * 180.02562 * 25 24 23 27 27 C 1.38612 * 119.25139 * 0.02562 * 25 24 23 28 28 C 1.47230 * 123.28622 * 90.29453 * 18 17 16 29 29 H 0.97007 * 119.99255 * 0.02562 * 1 2 3 30 30 H 1.08664 * 110.88564 * 19.19182 * 10 9 7 31 31 H 1.08869 * 110.31890 * 255.41158 * 10 9 7 32 32 H 1.08883 * 109.50279 * 276.82067 * 11 10 9 33 33 H 1.08706 * 110.48773 * 154.31499 * 11 10 9 34 34 H 1.09131 * 110.48062 * 93.52615 * 13 9 7 35 35 H 1.09152 * 110.30122 * 331.83382 * 13 9 7 36 36 H 1.09290 * 109.61595 * 200.02264 * 14 12 11 37 37 H 1.09648 * 108.91014 * 81.71661 * 14 12 11 38 38 H 1.09531 * 108.01552 * 153.69593 * 15 14 12 39 39 H 1.08601 * 110.25059 * 36.26096 * 15 14 12 40 40 H 1.08864 * 109.31129 * 303.98846 * 16 15 14 41 41 H 1.09065 * 109.32514 * 184.70458 * 16 15 14 42 42 H 1.09037 * 109.50271 * 169.95195 * 17 16 15 43 43 H 1.09017 * 109.60446 * 50.51228 * 17 16 15 44 44 H 1.07997 * 119.68611 * 359.97438 * 22 21 19 45 45 H 1.07997 * 119.47874 * 180.27533 * 24 23 22 46 46 H 1.07998 * 120.86909 * 180.02562 * 27 25 24 47 47 H 1.09332 * 108.77416 * 73.14449 * 28 18 17 48 48 H 1.09362 * 108.72366 * 190.40686 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0784 -1.2092 -0.1583 9 7 1.3400 -2.3801 0.2026 10 6 1.8526 -3.7576 0.0087 11 6 1.3079 -4.5105 1.2475 12 6 -0.0680 -3.8669 1.4900 13 6 -0.0551 -2.5630 0.6591 14 6 -0.2994 -3.5495 2.9406 15 6 0.2633 -4.6367 3.8477 16 6 -0.6466 -5.7657 4.0995 17 6 -0.9254 -6.5293 2.7841 18 7 -1.7344 -5.7122 1.9104 19 6 -3.0785 -5.8225 1.9963 20 8 -3.7917 -5.0808 1.3493 21 6 -3.6814 -6.8454 2.8773 22 6 -2.9911 -7.3141 3.9959 23 7 -3.5268 -8.2246 4.7816 24 6 -4.7240 -8.7286 4.5499 25 6 -5.4740 -8.3165 3.4605 26 9 -6.6986 -8.8413 3.2364 27 6 -4.9539 -7.3597 2.6030 28 6 -1.1677 -4.7794 0.9224 29 1 -0.4849 0.8402 -0.0004 30 1 2.9391 -3.7689 -0.0005 31 1 1.4448 -4.1876 -0.9046 32 1 1.9709 -4.3435 2.0949 33 1 1.2089 -5.5719 1.0345 34 1 -0.7272 -2.6573 -0.1954 35 1 -0.3629 -1.7216 1.2826 36 1 -1.3707 -3.4378 3.1254 37 1 0.1918 -2.5986 3.1790 38 1 0.5020 -4.1811 4.8147 39 1 1.1855 -5.0325 3.4326 40 1 -1.5820 -5.3895 4.5102 41 1 -0.1889 -6.4442 4.8205 42 1 -1.4497 -7.4590 3.0070 43 1 0.0179 -6.7648 2.2909 44 1 -2.0082 -6.9263 4.2192 45 1 -5.1275 -9.4706 5.2228 46 1 -5.5163 -7.0192 1.7461 47 1 -0.7509 -5.3563 0.0924 48 1 -1.9735 -4.1549 0.5266 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045931241.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:32 Heat of formation + Delta-G solvation = 11.402378 kcal Electronic energy + Delta-G solvation = -31827.091226 eV Core-core repulsion = 27605.278585 eV Total energy + Delta-G solvation = -4221.812641 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.10459 -42.50283 -40.80198 -39.63272 -37.88777 -35.22670 -34.57340 -33.75107 -33.16564 -31.70724 -30.04368 -28.77439 -27.70526 -26.47807 -25.67666 -24.77642 -24.17158 -22.83455 -21.97478 -20.68994 -19.57881 -18.97656 -18.81263 -18.64460 -18.19297 -17.40282 -17.20145 -16.87575 -16.74807 -16.47386 -16.09186 -15.68597 -15.29536 -15.23399 -15.09505 -14.81568 -14.71494 -14.49764 -14.27842 -13.99740 -13.79601 -13.60374 -13.35878 -13.09711 -13.06903 -12.74392 -12.66242 -12.46828 -12.15255 -12.10597 -11.84431 -11.70204 -11.67030 -11.46269 -11.22983 -11.16478 -11.13740 -11.00510 -10.70878 -10.65541 -10.07071 -9.72466 -8.88046 -7.88031 -5.22049 -0.62986 -0.21024 1.44522 1.47623 1.53734 1.54207 1.74791 2.45138 2.49489 2.83959 3.12098 3.31100 3.31997 3.52550 3.58434 3.60761 3.73817 3.79975 3.85560 3.93263 3.99584 4.11294 4.20401 4.33055 4.42264 4.47895 4.58472 4.60983 4.64125 4.67139 4.71201 4.80369 4.88915 4.91690 5.02393 5.10048 5.17735 5.21677 5.26227 5.33157 5.37338 5.41482 5.47226 5.53358 5.61139 5.69019 5.78064 6.19392 6.23459 6.54217 6.93866 7.04288 7.73824 8.50019 9.24758 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.021968 B = 0.002684 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.299944 B =10429.002170 C =10938.913167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.068 4.068 3 Si 0.976 3.024 4 H -0.275 1.275 5 H -0.299 1.299 6 H -0.275 1.275 7 C -0.233 4.233 8 H 0.084 0.916 9 N -0.621 5.621 10 C 0.113 3.887 11 C -0.106 4.106 12 C -0.071 4.071 13 C 0.180 3.820 14 C -0.085 4.085 15 C -0.114 4.114 16 C -0.149 4.149 17 C 0.069 3.931 18 N -0.579 5.579 19 C 0.549 3.451 20 O -0.577 6.577 21 C -0.166 4.166 22 C 0.090 3.910 23 N -0.462 5.462 24 C 0.107 3.893 25 C 0.040 3.960 26 F -0.127 7.127 27 C -0.064 4.064 28 C 0.134 3.866 29 H 0.245 0.755 30 H 0.060 0.940 31 H 0.021 0.979 32 H 0.080 0.920 33 H 0.097 0.903 34 H -0.018 1.018 35 H 0.040 0.960 36 H 0.038 0.962 37 H 0.035 0.965 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.064 0.936 41 H 0.126 0.874 42 H 0.115 0.885 43 H 0.110 0.890 44 H 0.228 0.772 45 H 0.206 0.794 46 H 0.149 0.851 47 H 0.077 0.923 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.699 -23.046 12.515 26.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.261 4.261 3 Si 0.804 3.196 4 H -0.201 1.201 5 H -0.226 1.226 6 H -0.201 1.201 7 C -0.362 4.362 8 H 0.102 0.898 9 N -0.346 5.346 10 C -0.012 4.012 11 C -0.144 4.144 12 C -0.073 4.073 13 C 0.054 3.946 14 C -0.123 4.123 15 C -0.151 4.151 16 C -0.186 4.186 17 C -0.053 4.053 18 N -0.308 5.308 19 C 0.338 3.662 20 O -0.457 6.457 21 C -0.171 4.171 22 C -0.065 4.065 23 N -0.170 5.170 24 C -0.051 4.051 25 C 0.018 3.982 26 F -0.106 7.106 27 C -0.091 4.091 28 C 0.012 3.988 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.039 0.961 32 H 0.099 0.901 33 H 0.115 0.885 34 H 0.000 1.000 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.084 0.916 39 H 0.105 0.895 40 H 0.082 0.918 41 H 0.144 0.856 42 H 0.132 0.868 43 H 0.128 0.872 44 H 0.243 0.757 45 H 0.223 0.777 46 H 0.167 0.833 47 H 0.095 0.905 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.592 -22.713 12.845 26.340 hybrid contribution -1.025 2.100 -1.650 2.860 sum -4.617 -20.613 11.196 23.907 Atomic orbital electron populations 1.70144 1.06576 1.25362 1.57892 1.25685 0.96358 1.01233 1.02856 0.85193 0.77157 0.78875 0.78389 1.20091 1.22555 1.20112 1.19401 0.91558 0.83794 1.41482 0.89781 1.45241 1.10999 1.01203 1.77153 1.22076 0.97857 0.84919 0.96307 1.22708 0.94351 0.99026 0.98308 1.21284 0.95183 0.94906 0.95937 1.21468 0.85476 0.93945 0.93757 1.20813 0.99508 0.98691 0.93285 1.20354 1.00163 0.95145 0.99428 1.21487 1.00771 0.98852 0.97539 1.22762 0.97986 0.93716 0.90870 1.47498 1.04808 1.40589 1.37944 1.18645 0.82912 0.83209 0.81455 1.90798 1.62007 1.45345 1.47564 1.20716 0.96265 1.00552 0.99585 1.25384 1.01723 0.91255 0.88185 1.68071 1.10948 1.09959 1.28014 1.23735 0.89658 0.97832 0.93909 1.18653 0.83264 0.97776 0.98506 1.91553 1.39742 1.84869 1.94434 1.21817 0.94314 0.93540 0.99445 1.21887 0.96046 0.91253 0.89645 0.94580 0.92158 0.96099 0.90127 0.88462 1.00008 0.94188 0.94333 0.94605 0.91596 0.89476 0.91784 0.85553 0.86754 0.87205 0.75668 0.77732 0.83303 0.90521 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.11 10.82 21.65 0.23 -58.87 16 2 C -0.07 -3.94 5.41 84.86 0.46 -3.48 16 3 Si 0.98 46.27 29.56 68.60 2.03 48.30 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 7 C -0.23 -13.03 10.36 84.02 0.87 -12.16 16 8 H 0.08 4.43 7.85 -2.91 -0.02 4.41 16 9 N -0.62 -31.49 3.37 -687.21 -2.32 -33.81 16 10 C 0.11 4.32 7.28 86.68 0.63 4.95 16 11 C -0.11 -3.02 4.66 31.51 0.15 -2.87 16 12 C -0.07 -2.42 0.62 -51.98 -0.03 -2.46 16 13 C 0.18 8.88 4.81 86.66 0.42 9.29 16 14 C -0.09 -2.69 4.35 29.51 0.13 -2.56 16 15 C -0.11 -2.25 4.82 28.57 0.14 -2.12 16 16 C -0.15 -2.03 4.03 29.34 0.12 -1.91 16 17 C 0.07 1.02 4.91 87.32 0.43 1.44 16 18 N -0.58 -14.30 2.27 -822.22 -1.87 -16.17 16 19 C 0.55 15.76 7.47 86.73 0.65 16.40 16 20 O -0.58 -22.26 15.91 -3.87 -0.06 -22.32 16 21 C -0.17 -3.60 5.58 -20.00 -0.11 -3.71 16 22 C 0.09 1.47 8.19 85.04 0.70 2.16 16 23 N -0.46 -7.07 10.34 -194.60 -2.01 -9.08 16 24 C 0.11 1.40 11.16 84.75 0.95 2.35 16 25 C 0.04 0.66 7.33 22.43 0.16 0.83 16 26 F -0.13 -2.20 17.28 44.97 0.78 -1.42 16 27 C -0.06 -1.33 9.71 22.78 0.22 -1.11 16 28 C 0.13 4.27 4.95 86.49 0.43 4.70 16 29 H 0.25 14.97 8.31 -92.70 -0.77 14.20 16 30 H 0.06 2.15 8.11 -2.56 -0.02 2.13 16 31 H 0.02 0.80 8.13 -2.46 -0.02 0.78 16 32 H 0.08 2.17 6.29 -2.45 -0.02 2.15 16 33 H 0.10 2.02 6.53 -2.54 -0.02 2.00 16 34 H -0.02 -1.00 7.30 -2.32 -0.02 -1.01 16 35 H 0.04 2.29 5.99 -2.31 -0.01 2.28 16 36 H 0.04 1.32 7.77 -2.23 -0.02 1.30 16 37 H 0.04 1.36 7.70 -2.04 -0.02 1.34 16 38 H 0.07 1.22 8.17 -2.10 -0.02 1.21 16 39 H 0.09 1.52 5.37 -2.60 -0.01 1.51 16 40 H 0.06 1.02 6.93 -2.46 -0.02 1.00 16 41 H 0.13 0.79 8.12 -2.35 -0.02 0.77 16 42 H 0.12 1.29 4.46 -2.37 -0.01 1.28 16 43 H 0.11 1.27 6.87 -2.38 -0.02 1.25 16 44 H 0.23 2.84 1.97 -3.69 -0.01 2.83 16 45 H 0.21 1.23 8.06 -2.91 -0.02 1.20 16 46 H 0.15 3.27 7.94 -2.91 -0.02 3.25 16 47 H 0.08 2.24 7.64 -2.21 -0.02 2.22 16 48 H 0.06 2.27 6.10 -2.19 -0.01 2.26 16 Total: -1.00 -76.67 362.15 4.09 -72.58 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 1.01 Total: 11.05 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 6.30 Total: 9.75 kcal Atomic # 7 Polarization: -111.97 SS G_CDS: -5.96 Total: -117.93 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.06 Total: -22.32 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.78 Total: -1.42 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -76.67 4.09 -72.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045931241.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.978 kcal (2) G-P(sol) polarization free energy of solvation -76.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds