Wall clock time and date at job start Wed Apr 1 2020 04:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 120.00078 * 2 1 4 4 H 1.48509 * 109.46781 * 275.00275 * 3 2 1 5 5 H 1.48501 * 109.47201 * 34.99766 * 3 2 1 6 6 H 1.48494 * 109.46961 * 155.00287 * 3 2 1 7 7 C 1.38808 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00174 * 174.95247 * 7 2 1 9 9 N 1.36939 * 120.00070 * 354.96010 * 7 2 1 10 10 C 1.47063 * 125.63397 * 355.00663 * 9 7 2 11 11 C 1.54395 * 107.41153 * 178.98999 * 10 9 7 12 12 C 1.54978 * 102.75552 * 338.26776 * 11 10 9 13 13 C 1.47514 * 125.63982 * 175.01046 * 9 7 2 14 14 C 1.46802 * 112.88889 * 156.68501 * 12 11 10 15 15 C 1.52848 * 113.96691 * 184.94875 * 14 12 11 16 16 C 1.50811 * 109.42133 * 275.79549 * 15 14 12 17 17 C 1.53992 * 110.39305 * 91.68908 * 16 15 14 18 18 N 1.47462 * 112.20720 * 319.23668 * 17 16 15 19 19 C 1.34776 * 118.68709 * 137.96469 * 18 17 16 20 20 O 1.21553 * 119.99685 * 185.89542 * 19 18 17 21 21 C 1.47845 * 120.00083 * 5.90632 * 19 18 17 22 22 C 1.39554 * 120.54830 * 215.08974 * 21 19 18 23 23 N 1.31658 * 120.62584 * 179.72353 * 22 21 19 24 24 C 1.31937 * 121.90390 * 0.53275 * 23 22 21 25 25 C 1.38538 * 121.04850 * 359.75335 * 24 23 22 26 26 F 1.35101 * 120.37675 * 179.97438 * 25 24 23 27 27 C 1.38619 * 119.25059 * 359.97371 * 25 24 23 28 28 C 1.44733 * 122.62345 * 317.96663 * 18 17 16 29 29 H 0.97009 * 119.99583 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.88119 * 298.48726 * 10 9 7 31 31 H 1.09001 * 109.87841 * 59.49161 * 10 9 7 32 32 H 1.09006 * 110.73739 * 96.51910 * 11 10 9 33 33 H 1.09000 * 110.73804 * 219.83469 * 11 10 9 34 34 H 1.08999 * 110.37198 * 322.47277 * 13 9 7 35 35 H 1.09004 * 110.37238 * 84.81145 * 13 9 7 36 36 H 1.08996 * 108.58112 * 306.10627 * 14 12 11 37 37 H 1.08997 * 108.58748 * 63.78713 * 14 12 11 38 38 H 1.08996 * 109.47881 * 35.77998 * 15 14 12 39 39 H 1.08996 * 109.47479 * 155.81320 * 15 14 12 40 40 H 1.08991 * 109.31579 * 211.97556 * 16 15 14 41 41 H 1.08998 * 109.31787 * 331.40628 * 16 15 14 42 42 H 1.09000 * 108.93467 * 79.93961 * 17 16 15 43 43 H 1.09002 * 108.93144 * 198.53164 * 17 16 15 44 44 H 1.08004 * 119.68752 * 359.96599 * 22 21 19 45 45 H 1.08000 * 119.47620 * 179.72778 * 24 23 22 46 46 H 1.07995 * 120.86922 * 180.02562 * 27 25 24 47 47 H 1.08994 * 109.51548 * 330.55423 * 28 18 17 48 48 H 1.09002 * 109.51169 * 210.38959 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3920 2.1075 -1.3949 5 1 1.5045 2.6199 0.8030 6 1 3.5966 1.4119 0.5916 7 6 2.0103 -1.2021 -0.0005 8 1 3.0871 -1.2039 -0.0828 9 7 1.3296 -2.3858 0.1031 10 6 -0.1177 -2.5254 0.3242 11 6 -0.4380 -4.0356 0.3464 12 6 0.7622 -4.6513 -0.4165 13 6 1.9267 -3.7316 0.0116 14 6 0.9898 -6.0620 -0.0799 15 6 2.2386 -6.6609 -0.7265 16 6 1.9074 -7.1231 -2.1233 17 6 2.1866 -6.0009 -3.1402 18 7 1.7652 -4.6789 -2.6410 19 6 2.5720 -3.6202 -2.8526 20 8 2.3018 -2.5423 -2.3602 21 6 3.7854 -3.7700 -3.6840 22 6 4.9463 -3.0580 -3.3792 23 7 6.0294 -3.1943 -4.1153 24 6 6.0625 -3.9913 -5.1661 25 6 4.9504 -4.7285 -5.5392 26 9 4.9992 -5.5401 -6.6181 27 6 3.7870 -4.6239 -4.7929 28 6 0.5200 -4.4729 -1.9327 29 1 -0.4850 0.8402 0.0004 30 1 -0.3922 -2.0742 1.2776 31 1 -0.6646 -2.0423 -0.4855 32 1 -0.4754 -4.4072 1.3705 33 1 -1.3742 -4.2393 -0.1735 34 1 2.7171 -3.7457 -0.7388 35 1 2.3172 -4.0402 0.9813 36 1 1.0829 -6.1501 1.0025 37 1 0.1224 -6.6396 -0.3989 38 1 3.0232 -5.9056 -0.7700 39 1 2.5828 -7.5092 -0.1350 40 1 2.5169 -7.9926 -2.3694 41 1 0.8541 -7.3994 -2.1714 42 1 3.2553 -5.9744 -3.3532 43 1 1.6490 -6.2183 -4.0632 44 1 4.9576 -2.3918 -2.5291 45 1 6.9708 -4.0700 -5.7450 46 1 2.9049 -5.1869 -5.0599 47 1 -0.2167 -5.2010 -2.2721 48 1 0.1532 -3.4650 -2.1269 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045931243.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:36 Heat of formation + Delta-G solvation = 17.152942 kcal Electronic energy + Delta-G solvation = -33140.833876 eV Core-core repulsion = 28919.270598 eV Total energy + Delta-G solvation = -4221.563278 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -49.23079 -41.12013 -39.79855 -37.71094 -36.26375 -33.86337 -32.80766 -32.50848 -31.09110 -30.34564 -28.76641 -26.80048 -26.11404 -25.06847 -24.50433 -23.56039 -22.83050 -21.07490 -19.90333 -19.72284 -18.31749 -17.86860 -17.24665 -17.15857 -16.78738 -16.31732 -16.07038 -15.77585 -15.31041 -14.75387 -14.39951 -14.33129 -13.98212 -13.75201 -13.69650 -13.59740 -13.39220 -13.09532 -13.01392 -12.54238 -12.41412 -12.12352 -11.89473 -11.88296 -11.50602 -11.19043 -10.94281 -10.91927 -10.67303 -10.64691 -10.34406 -10.13905 -9.98845 -9.95408 -9.87177 -9.71771 -9.56840 -9.39648 -9.30053 -9.08878 -8.35130 -8.20696 -6.50970 -5.42233 -2.71435 0.47414 0.76423 2.94277 3.13020 3.53333 3.56339 3.61230 3.62155 3.80511 4.18606 4.35608 4.40784 4.57904 4.64765 4.73739 4.85135 4.87847 5.04661 5.09724 5.14594 5.37925 5.40517 5.47840 5.54475 5.61734 5.65870 5.74120 5.78861 5.82422 5.87498 5.94141 6.04900 6.14132 6.19534 6.29733 6.33063 6.35472 6.44131 6.51933 6.68119 6.77120 6.90154 6.95288 7.04597 7.52426 7.63562 7.69276 7.85900 8.04737 8.52804 8.57214 9.49524 10.11194 10.77189 11.69530 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.010005 B = 0.005133 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.957942 B = 5453.976704 C = 7618.640602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.016 4.016 3 Si 0.902 3.098 4 H -0.294 1.294 5 H -0.296 1.296 6 H -0.285 1.285 7 C -0.175 4.175 8 H 0.069 0.931 9 N -0.585 5.585 10 C 0.176 3.824 11 C -0.133 4.133 12 C -0.092 4.092 13 C 0.152 3.848 14 C -0.094 4.094 15 C -0.115 4.115 16 C -0.129 4.129 17 C 0.101 3.899 18 N -0.601 5.601 19 C 0.525 3.475 20 O -0.431 6.431 21 C -0.139 4.139 22 C 0.144 3.856 23 N -0.458 5.458 24 C 0.086 3.914 25 C 0.037 3.963 26 F -0.130 7.130 27 C -0.088 4.088 28 C 0.140 3.860 29 H 0.245 0.755 30 H 0.026 0.974 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.042 0.958 35 H 0.003 0.997 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.060 0.940 44 H 0.177 0.823 45 H 0.169 0.831 46 H 0.155 0.845 47 H 0.062 0.938 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.295 -17.784 -9.113 20.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.734 3.266 4 H -0.222 1.222 5 H -0.222 1.222 6 H -0.211 1.211 7 C -0.304 4.304 8 H 0.087 0.913 9 N -0.309 5.309 10 C 0.051 3.949 11 C -0.172 4.172 12 C -0.094 4.094 13 C 0.026 3.974 14 C -0.132 4.132 15 C -0.153 4.153 16 C -0.167 4.167 17 C -0.022 4.022 18 N -0.337 5.337 19 C 0.309 3.691 20 O -0.300 6.300 21 C -0.145 4.145 22 C -0.013 4.013 23 N -0.165 5.165 24 C -0.073 4.073 25 C 0.015 3.985 26 F -0.109 7.109 27 C -0.115 4.115 28 C 0.017 3.983 29 H 0.055 0.945 30 H 0.044 0.956 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.021 0.979 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.078 0.922 44 H 0.194 0.806 45 H 0.186 0.814 46 H 0.173 0.827 47 H 0.081 0.919 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.836 -16.475 -8.649 19.501 hybrid contribution -0.348 0.102 -0.581 0.684 sum 5.488 -16.374 -9.230 19.581 Atomic orbital electron populations 1.69932 1.04673 1.24067 1.59340 1.24623 0.95506 0.97051 1.03859 0.86224 0.78547 0.84624 0.77196 1.22160 1.22245 1.21065 1.18802 0.90024 0.82217 1.39369 0.91280 1.44258 1.03160 0.99620 1.83876 1.21158 0.85641 0.87901 1.00170 1.22912 0.95955 0.99881 0.98407 1.21076 0.98708 0.94276 0.95349 1.21523 0.93729 0.85997 0.96198 1.20266 0.97018 0.95432 1.00451 1.21074 0.98947 1.00281 0.95003 1.21752 1.02268 0.97149 0.95581 1.22275 1.00204 0.83271 0.96406 1.47497 1.21377 1.06885 1.57904 1.18158 0.83175 0.85875 0.81923 1.91327 1.70004 1.24532 1.44110 1.21229 0.97464 0.98480 0.97277 1.23188 0.86152 0.94448 0.97552 1.67859 1.27988 1.16152 1.04495 1.23099 0.97501 0.92172 0.94480 1.18658 0.96571 0.95577 0.87696 1.91530 1.96918 1.70470 1.51974 1.22099 0.98109 0.97360 0.93952 1.21485 0.83543 1.02981 0.90252 0.94461 0.95559 0.92459 0.92699 0.92408 0.94013 0.97915 0.92489 0.92707 0.91396 0.92242 0.91102 0.91437 0.90273 0.92224 0.80562 0.81434 0.82704 0.91930 0.88532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.22 10.39 55.49 0.58 -27.65 16 2 C -0.02 -0.48 5.47 -17.43 -0.10 -0.57 16 3 Si 0.90 23.46 29.56 -169.99 -5.02 18.43 16 4 H -0.29 -7.74 7.11 56.52 0.40 -7.34 16 5 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 6 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 7 C -0.18 -4.96 8.39 -15.06 -0.13 -5.09 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.58 -14.81 2.63 -170.22 -0.45 -15.26 16 10 C 0.18 4.28 4.73 -3.00 -0.01 4.27 16 11 C -0.13 -2.42 5.88 -24.96 -0.15 -2.56 16 12 C -0.09 -1.51 0.60 -154.85 -0.09 -1.60 16 13 C 0.15 3.14 4.51 -2.73 -0.01 3.13 16 14 C -0.09 -1.21 4.17 -29.77 -0.12 -1.34 16 15 C -0.12 -1.29 5.46 -27.91 -0.15 -1.44 16 16 C -0.13 -1.16 5.68 -27.31 -0.16 -1.32 16 17 C 0.10 1.01 4.47 -3.00 -0.01 0.99 16 18 N -0.60 -8.44 1.99 -173.81 -0.35 -8.79 16 19 C 0.52 8.76 5.53 -12.33 -0.07 8.69 16 20 O -0.43 -9.54 11.71 5.32 0.06 -9.48 16 21 C -0.14 -1.92 5.14 -104.83 -0.54 -2.45 16 22 C 0.14 2.06 10.78 -17.14 -0.18 1.88 16 23 N -0.46 -6.05 10.34 -12.86 -0.13 -6.18 16 24 C 0.09 0.92 11.16 -17.40 -0.19 0.72 16 25 C 0.04 0.38 7.33 -39.33 -0.29 0.09 16 26 F -0.13 -1.31 17.28 2.25 0.04 -1.27 16 27 C -0.09 -0.97 7.51 -38.80 -0.29 -1.26 16 28 C 0.14 2.21 4.30 -4.16 -0.02 2.19 16 29 H 0.24 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.03 0.71 7.88 -51.93 -0.41 0.30 16 31 H 0.06 1.57 6.84 -51.93 -0.36 1.21 16 32 H 0.05 0.95 8.07 -51.93 -0.42 0.53 16 33 H 0.06 0.94 8.01 -51.93 -0.42 0.53 16 34 H 0.04 0.87 4.10 -51.93 -0.21 0.65 16 35 H 0.00 0.07 8.09 -51.93 -0.42 -0.35 16 36 H 0.06 0.76 8.11 -51.93 -0.42 0.34 16 37 H 0.05 0.63 7.41 -51.93 -0.38 0.25 16 38 H 0.07 0.90 6.30 -51.93 -0.33 0.57 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.58 7.34 -51.93 -0.38 0.20 16 42 H 0.08 0.76 5.00 -51.93 -0.26 0.50 16 43 H 0.06 0.49 7.38 -51.93 -0.38 0.11 16 44 H 0.18 2.69 8.01 -52.48 -0.42 2.27 16 45 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 46 H 0.16 1.41 5.75 -52.49 -0.30 1.11 16 47 H 0.06 0.83 8.09 -51.93 -0.42 0.41 16 48 H 0.10 1.95 6.55 -51.93 -0.34 1.61 16 LS Contribution 359.75 15.07 5.42 5.42 Total: -1.00 -32.99 359.75 -9.05 -42.05 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -6.69 Total: -1.61 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: -2.52 Total: 4.33 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: -0.35 Total: -57.88 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.06 Total: -9.48 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 23.46 SS G_CDS: -5.02 Total: 18.43 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.99 -9.05 -42.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045931243.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.202 kcal (2) G-P(sol) polarization free energy of solvation -32.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds