Wall clock time and date at job start Wed Apr 1 2020 04:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 120.00078 * 2 1 4 4 H 1.48509 * 109.46781 * 275.00275 * 3 2 1 5 5 H 1.48501 * 109.47201 * 34.99766 * 3 2 1 6 6 H 1.48494 * 109.46961 * 155.00287 * 3 2 1 7 7 C 1.38808 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00174 * 174.95247 * 7 2 1 9 9 N 1.36939 * 120.00070 * 354.96010 * 7 2 1 10 10 C 1.47063 * 125.63397 * 355.00663 * 9 7 2 11 11 C 1.54395 * 107.41153 * 178.98999 * 10 9 7 12 12 C 1.54978 * 102.75552 * 338.26776 * 11 10 9 13 13 C 1.47514 * 125.63982 * 175.01046 * 9 7 2 14 14 C 1.46802 * 112.88889 * 156.68501 * 12 11 10 15 15 C 1.52848 * 113.96691 * 184.94875 * 14 12 11 16 16 C 1.50811 * 109.42133 * 275.79549 * 15 14 12 17 17 C 1.53992 * 110.39305 * 91.68908 * 16 15 14 18 18 N 1.47462 * 112.20720 * 319.23668 * 17 16 15 19 19 C 1.34776 * 118.68709 * 137.96469 * 18 17 16 20 20 O 1.21553 * 119.99685 * 185.89542 * 19 18 17 21 21 C 1.47845 * 120.00083 * 5.90632 * 19 18 17 22 22 C 1.39554 * 120.54830 * 215.08974 * 21 19 18 23 23 N 1.31658 * 120.62584 * 179.72353 * 22 21 19 24 24 C 1.31937 * 121.90390 * 0.53275 * 23 22 21 25 25 C 1.38538 * 121.04850 * 359.75335 * 24 23 22 26 26 F 1.35101 * 120.37675 * 179.97438 * 25 24 23 27 27 C 1.38619 * 119.25059 * 359.97371 * 25 24 23 28 28 C 1.44733 * 122.62345 * 317.96663 * 18 17 16 29 29 H 0.97009 * 119.99583 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.88119 * 298.48726 * 10 9 7 31 31 H 1.09001 * 109.87841 * 59.49161 * 10 9 7 32 32 H 1.09006 * 110.73739 * 96.51910 * 11 10 9 33 33 H 1.09000 * 110.73804 * 219.83469 * 11 10 9 34 34 H 1.08999 * 110.37198 * 322.47277 * 13 9 7 35 35 H 1.09004 * 110.37238 * 84.81145 * 13 9 7 36 36 H 1.08996 * 108.58112 * 306.10627 * 14 12 11 37 37 H 1.08997 * 108.58748 * 63.78713 * 14 12 11 38 38 H 1.08996 * 109.47881 * 35.77998 * 15 14 12 39 39 H 1.08996 * 109.47479 * 155.81320 * 15 14 12 40 40 H 1.08991 * 109.31579 * 211.97556 * 16 15 14 41 41 H 1.08998 * 109.31787 * 331.40628 * 16 15 14 42 42 H 1.09000 * 108.93467 * 79.93961 * 17 16 15 43 43 H 1.09002 * 108.93144 * 198.53164 * 17 16 15 44 44 H 1.08004 * 119.68752 * 359.96599 * 22 21 19 45 45 H 1.08000 * 119.47620 * 179.72778 * 24 23 22 46 46 H 1.07995 * 120.86922 * 180.02562 * 27 25 24 47 47 H 1.08994 * 109.51548 * 330.55423 * 28 18 17 48 48 H 1.09002 * 109.51169 * 210.38959 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3920 2.1075 -1.3949 5 1 1.5045 2.6199 0.8030 6 1 3.5966 1.4119 0.5916 7 6 2.0103 -1.2021 -0.0005 8 1 3.0871 -1.2039 -0.0828 9 7 1.3296 -2.3858 0.1031 10 6 -0.1177 -2.5254 0.3242 11 6 -0.4380 -4.0356 0.3464 12 6 0.7622 -4.6513 -0.4165 13 6 1.9267 -3.7316 0.0116 14 6 0.9898 -6.0620 -0.0799 15 6 2.2386 -6.6609 -0.7265 16 6 1.9074 -7.1231 -2.1233 17 6 2.1866 -6.0009 -3.1402 18 7 1.7652 -4.6789 -2.6410 19 6 2.5720 -3.6202 -2.8526 20 8 2.3018 -2.5423 -2.3602 21 6 3.7854 -3.7700 -3.6840 22 6 4.9463 -3.0580 -3.3792 23 7 6.0294 -3.1943 -4.1153 24 6 6.0625 -3.9913 -5.1661 25 6 4.9504 -4.7285 -5.5392 26 9 4.9992 -5.5401 -6.6181 27 6 3.7870 -4.6239 -4.7929 28 6 0.5200 -4.4729 -1.9327 29 1 -0.4850 0.8402 0.0004 30 1 -0.3922 -2.0742 1.2776 31 1 -0.6646 -2.0423 -0.4855 32 1 -0.4754 -4.4072 1.3705 33 1 -1.3742 -4.2393 -0.1735 34 1 2.7171 -3.7457 -0.7388 35 1 2.3172 -4.0402 0.9813 36 1 1.0829 -6.1501 1.0025 37 1 0.1224 -6.6396 -0.3989 38 1 3.0232 -5.9056 -0.7700 39 1 2.5828 -7.5092 -0.1350 40 1 2.5169 -7.9926 -2.3694 41 1 0.8541 -7.3994 -2.1714 42 1 3.2553 -5.9744 -3.3532 43 1 1.6490 -6.2183 -4.0632 44 1 4.9576 -2.3918 -2.5291 45 1 6.9708 -4.0700 -5.7450 46 1 2.9049 -5.1869 -5.0599 47 1 -0.2167 -5.2010 -2.2721 48 1 0.1532 -3.4650 -2.1269 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045931243.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:35 Heat of formation + Delta-G solvation = -3.339635 kcal Electronic energy + Delta-G solvation = -33141.722501 eV Core-core repulsion = 28919.270598 eV Total energy + Delta-G solvation = -4222.451902 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.06048 -42.28912 -40.91675 -39.09812 -37.59980 -35.26600 -34.21438 -33.67874 -32.15185 -32.00463 -30.41680 -27.96859 -27.67893 -26.58797 -25.59256 -24.56278 -24.32638 -22.25750 -21.63501 -20.76707 -19.62703 -18.88818 -18.82525 -18.17579 -18.09375 -17.36285 -17.15677 -16.86712 -16.70228 -16.46807 -15.85968 -15.47496 -15.23801 -15.10482 -14.78566 -14.74723 -14.50941 -14.32377 -14.14764 -13.92190 -13.71227 -13.44722 -13.29978 -13.22385 -12.94570 -12.87015 -12.73769 -12.45510 -12.12988 -11.98762 -11.84442 -11.65470 -11.60283 -11.31307 -11.18478 -11.10562 -11.02447 -10.87667 -10.56010 -10.44896 -10.11598 -9.43033 -8.64295 -7.66348 -4.95612 -0.50366 -0.17433 1.41151 1.44207 1.51098 1.77761 2.02600 2.50151 2.58889 2.85351 3.22563 3.39939 3.50668 3.52670 3.61766 3.64792 3.88903 3.92654 3.96692 4.01826 4.12989 4.16813 4.35164 4.40377 4.44507 4.58308 4.60859 4.63251 4.71595 4.76029 4.79939 4.87308 4.94176 5.03976 5.06551 5.15528 5.23510 5.28029 5.32741 5.40044 5.41240 5.52799 5.55894 5.66268 5.72253 5.82040 5.94018 6.37812 6.41736 6.61585 7.28820 7.35144 7.98104 8.61937 9.43792 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.010005 B = 0.005133 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.957942 B = 5453.976704 C = 7618.640602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.077 4.077 3 Si 0.958 3.042 4 H -0.299 1.299 5 H -0.296 1.296 6 H -0.274 1.274 7 C -0.167 4.167 8 H 0.060 0.940 9 N -0.599 5.599 10 C 0.185 3.815 11 C -0.120 4.120 12 C -0.072 4.072 13 C 0.149 3.851 14 C -0.093 4.093 15 C -0.113 4.113 16 C -0.123 4.123 17 C 0.092 3.908 18 N -0.593 5.593 19 C 0.524 3.476 20 O -0.504 6.504 21 C -0.150 4.150 22 C 0.129 3.871 23 N -0.475 5.475 24 C 0.095 3.905 25 C 0.049 3.951 26 F -0.120 7.120 27 C -0.072 4.072 28 C 0.145 3.855 29 H 0.236 0.764 30 H -0.015 1.015 31 H 0.018 0.982 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.041 0.959 35 H -0.006 1.006 36 H 0.053 0.947 37 H 0.085 0.915 38 H 0.039 0.961 39 H 0.079 0.921 40 H 0.100 0.900 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.151 0.849 45 H 0.203 0.797 46 H 0.181 0.819 47 H 0.103 0.897 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.071 -22.309 -11.248 25.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.268 4.268 3 Si 0.789 3.211 4 H -0.227 1.227 5 H -0.223 1.223 6 H -0.199 1.199 7 C -0.297 4.297 8 H 0.078 0.922 9 N -0.322 5.322 10 C 0.060 3.940 11 C -0.159 4.159 12 C -0.074 4.074 13 C 0.024 3.976 14 C -0.131 4.131 15 C -0.151 4.151 16 C -0.161 4.161 17 C -0.029 4.029 18 N -0.326 5.326 19 C 0.310 3.690 20 O -0.378 6.378 21 C -0.156 4.156 22 C -0.028 4.028 23 N -0.182 5.182 24 C -0.064 4.064 25 C 0.028 3.972 26 F -0.099 7.099 27 C -0.098 4.098 28 C 0.022 3.978 29 H 0.046 0.954 30 H 0.003 0.997 31 H 0.036 0.964 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.059 0.941 35 H 0.012 0.988 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.058 0.942 39 H 0.098 0.902 40 H 0.118 0.882 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.109 0.891 44 H 0.168 0.832 45 H 0.219 0.781 46 H 0.198 0.802 47 H 0.121 0.879 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.641 -21.089 -10.789 24.602 hybrid contribution -0.469 1.401 -0.015 1.477 sum 6.172 -19.688 -10.804 23.290 Atomic orbital electron populations 1.70159 1.05745 1.23790 1.61389 1.25294 0.96363 0.99878 1.05255 0.85323 0.77921 0.81219 0.76637 1.22726 1.22327 1.19868 1.18953 0.89840 0.83748 1.37208 0.92209 1.44459 1.03838 1.00691 1.83254 1.20890 0.84832 0.91987 0.96322 1.22787 0.97978 0.95054 1.00063 1.21005 0.95183 0.95663 0.95589 1.21672 0.95532 0.84831 0.95614 1.20271 0.99423 0.92744 1.00655 1.21057 0.96997 1.00079 0.96968 1.21764 1.03891 0.97208 0.93263 1.22658 1.01028 0.81148 0.98050 1.47564 1.20155 1.08200 1.56706 1.18601 0.83724 0.85434 0.81282 1.91290 1.71840 1.27292 1.47369 1.20874 0.96011 1.00274 0.98436 1.22877 0.87272 0.94890 0.97721 1.67862 1.27494 1.17360 1.05515 1.23653 0.98850 0.90554 0.93310 1.18540 0.96085 0.95134 0.87482 1.91568 1.96831 1.70066 1.51387 1.22221 0.99197 0.96118 0.92312 1.21311 0.85165 1.01317 0.90040 0.95448 0.99731 0.96377 0.91400 0.89806 0.94129 0.98839 0.92841 0.89605 0.94182 0.90228 0.88174 0.89852 0.89744 0.89058 0.83211 0.78083 0.80229 0.87862 0.93721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.21 10.39 21.65 0.22 -61.98 16 2 C -0.08 -4.81 5.47 84.86 0.46 -4.34 16 3 Si 0.96 51.01 29.56 68.60 2.03 53.03 16 4 H -0.30 -16.03 7.11 99.48 0.71 -15.33 16 5 H -0.30 -15.67 7.11 99.48 0.71 -14.96 16 6 H -0.27 -13.86 7.11 99.48 0.71 -13.15 16 7 C -0.17 -10.11 8.39 84.03 0.70 -9.41 16 8 H 0.06 3.64 7.83 -2.91 -0.02 3.61 16 9 N -0.60 -32.29 2.63 -692.45 -1.82 -34.11 16 10 C 0.18 9.58 4.73 86.75 0.41 9.99 16 11 C -0.12 -4.36 5.88 31.74 0.19 -4.17 16 12 C -0.07 -2.31 0.60 -52.40 -0.03 -2.34 16 13 C 0.15 6.37 4.51 86.67 0.39 6.76 16 14 C -0.09 -2.09 4.17 28.62 0.12 -1.97 16 15 C -0.11 -2.09 5.46 29.83 0.16 -1.92 16 16 C -0.12 -1.51 5.68 30.22 0.17 -1.34 16 17 C 0.09 1.43 4.47 86.53 0.39 1.81 16 18 N -0.59 -15.77 1.99 -822.08 -1.64 -17.40 16 19 C 0.52 17.90 5.53 86.79 0.48 18.38 16 20 O -0.50 -23.93 11.71 -3.88 -0.05 -23.98 16 21 C -0.15 -4.11 5.14 -20.00 -0.10 -4.21 16 22 C 0.13 3.85 10.78 85.04 0.92 4.76 16 23 N -0.47 -12.26 10.34 -194.60 -2.01 -14.28 16 24 C 0.10 1.77 11.16 84.75 0.95 2.72 16 25 C 0.05 0.85 7.33 22.43 0.16 1.02 16 26 F -0.12 -1.87 17.28 44.97 0.78 -1.09 16 27 C -0.07 -1.38 7.51 22.78 0.17 -1.20 16 28 C 0.14 4.42 4.30 87.25 0.38 4.79 16 29 H 0.24 15.08 8.31 -92.70 -0.77 14.31 16 30 H -0.02 -0.91 7.88 -2.39 -0.02 -0.93 16 31 H 0.02 1.07 6.84 -2.39 -0.02 1.05 16 32 H 0.07 2.29 8.07 -2.38 -0.02 2.27 16 33 H 0.08 2.62 8.01 -2.39 -0.02 2.60 16 34 H 0.04 1.77 4.10 -2.39 -0.01 1.76 16 35 H -0.01 -0.27 8.09 -2.38 -0.02 -0.29 16 36 H 0.05 1.26 8.11 -2.39 -0.02 1.24 16 37 H 0.09 1.48 7.41 -2.39 -0.02 1.46 16 38 H 0.04 0.97 6.30 -2.39 -0.02 0.96 16 39 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.08 0.85 7.34 -2.39 -0.02 0.83 16 42 H 0.08 1.26 5.00 -2.39 -0.01 1.25 16 43 H 0.09 0.94 7.38 -2.39 -0.02 0.92 16 44 H 0.15 5.13 8.01 -2.91 -0.02 5.11 16 45 H 0.20 2.28 8.06 -2.91 -0.02 2.26 16 46 H 0.18 2.47 5.75 -2.91 -0.02 2.45 16 47 H 0.10 2.32 8.09 -2.39 -0.02 2.30 16 48 H 0.04 1.87 6.55 -2.39 -0.02 1.86 16 Total: -1.00 -81.39 359.75 4.42 -76.98 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: 0.99 Total: 3.50 kcal Atomic # 6 Polarization: 13.41 SS G_CDS: 5.92 Total: 19.33 kcal Atomic # 7 Polarization: -122.53 SS G_CDS: -5.25 Total: -127.77 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.05 Total: -23.98 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.78 Total: -1.09 kcal Atomic # 14 Polarization: 51.01 SS G_CDS: 2.03 Total: 53.03 kcal Total: -81.39 4.42 -76.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045931243.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.638 kcal (2) G-P(sol) polarization free energy of solvation -81.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds