Wall clock time and date at job start Wed Apr 1 2020 05:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 119.99874 * 2 1 4 4 H 1.48504 * 109.46924 * 239.99770 * 3 2 1 5 5 H 1.48499 * 109.47194 * 120.00124 * 3 2 1 6 6 H 1.48500 * 109.47458 * 359.97438 * 3 2 1 7 7 C 1.38814 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99790 * 150.93059 * 7 2 1 9 9 N 1.36937 * 119.99907 * 330.92848 * 7 2 1 10 10 C 1.47422 * 125.64875 * 347.58851 * 9 7 2 11 11 C 1.54902 * 104.83341 * 204.09242 * 10 9 7 12 12 C 1.55160 * 101.58043 * 322.98985 * 11 10 9 13 13 H 1.08997 * 110.72541 * 276.95935 * 12 11 10 14 14 N 1.46902 * 110.71669 * 153.86371 * 12 11 10 15 15 C 1.46902 * 110.99857 * 184.12387 * 14 12 11 16 16 C 1.53236 * 109.34109 * 172.74652 * 15 14 12 17 17 N 1.47088 * 108.52177 * 53.83054 * 16 15 14 18 18 C 1.34772 * 120.88248 * 128.79367 * 17 16 15 19 19 O 1.21546 * 120.00219 * 5.76238 * 18 17 16 20 20 C 1.47931 * 119.99917 * 185.76939 * 18 17 16 21 21 C 1.39982 * 120.11878 * 200.04966 * 20 18 17 22 22 C 1.38410 * 117.97156 * 179.97438 * 21 20 18 23 23 C 1.39348 * 118.03822 * 359.97438 * 22 21 20 24 24 O 1.35519 * 120.02892 * 180.02562 * 23 22 21 25 25 N 1.32674 * 119.94289 * 0.02562 * 23 22 21 26 26 N 1.28355 * 122.19333 * 359.72828 * 25 23 22 27 27 C 1.47084 * 118.23465 * 308.81459 * 17 16 15 28 28 C 1.46895 * 111.00244 * 59.82363 * 14 12 11 29 29 C 1.47016 * 125.64777 * 167.28388 * 9 7 2 30 30 H 0.97003 * 120.00139 * 174.64115 * 1 2 3 31 31 H 1.08997 * 110.36760 * 322.93335 * 10 9 7 32 32 H 1.09001 * 110.36403 * 85.14284 * 10 9 7 33 33 H 1.09002 * 111.00562 * 81.06602 * 11 10 9 34 34 H 1.09006 * 111.00822 * 204.88100 * 11 10 9 35 35 H 1.09007 * 109.49336 * 292.70841 * 15 14 12 36 36 H 1.09003 * 109.49684 * 52.78621 * 15 14 12 37 37 H 1.08995 * 109.63058 * 294.12252 * 16 15 14 38 38 H 1.09008 * 109.78998 * 173.63151 * 16 15 14 39 39 H 1.07999 * 121.01266 * 359.95257 * 21 20 18 40 40 H 1.08002 * 120.98192 * 180.02562 * 22 21 20 41 41 H 0.96701 * 113.99844 * 90.00894 * 24 23 22 42 42 H 1.09000 * 109.62541 * 291.47815 * 27 17 16 43 43 H 1.08997 * 109.78812 * 170.98712 * 27 17 16 44 44 H 1.09004 * 109.49342 * 307.21235 * 28 14 12 45 45 H 1.09000 * 109.49560 * 67.26059 * 28 14 12 46 46 H 1.09002 * 109.88260 * 298.39214 * 29 9 7 47 47 H 1.09003 * 109.88483 * 59.55360 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 3.1039 1.6965 1.2125 6 1 1.2852 2.7465 -0.0006 7 6 2.0102 -1.2021 0.0005 8 1 2.9882 -1.2612 -0.4539 9 7 1.4550 -2.3131 0.5773 10 6 0.2655 -2.3255 1.4481 11 6 0.4122 -3.6099 2.3015 12 6 1.0261 -4.5978 1.2745 13 1 0.2475 -5.0449 0.6565 14 7 1.8068 -5.6384 1.9570 15 6 2.4708 -6.5195 0.9871 16 6 3.4138 -7.4723 1.7296 17 7 2.6481 -8.1653 2.7769 18 6 2.6808 -9.5084 2.8836 19 8 3.4287 -10.1561 2.1776 20 6 1.8063 -10.1944 3.8598 21 6 2.1088 -11.4944 4.2817 22 6 1.2607 -12.0938 5.1966 23 6 0.1585 -11.3668 5.6421 24 8 -0.6980 -11.9145 6.5383 25 7 -0.0518 -10.1380 5.1881 26 7 0.7350 -9.5772 4.3432 27 6 1.8455 -7.3536 3.7045 28 6 0.9644 -6.4055 2.8842 29 6 1.9425 -3.6917 0.4255 30 1 -0.4850 -0.8364 -0.0785 31 1 0.2550 -1.4437 2.0886 32 1 -0.6435 -2.3685 0.8481 33 1 1.0896 -3.4468 3.1398 34 1 -0.5593 -3.9610 2.6496 35 1 1.7205 -7.0975 0.4476 36 1 3.0435 -5.9177 0.2815 37 1 4.2249 -6.9039 2.1845 38 1 3.8245 -8.2027 1.0324 39 1 2.9772 -12.0139 3.9045 40 1 1.4481 -13.0951 5.5554 41 1 -0.4627 -11.7458 7.4609 42 1 2.5061 -6.7738 4.3492 43 1 1.2167 -8.0029 4.3136 44 1 0.4445 -5.7210 3.5545 45 1 0.2347 -6.9847 2.3184 46 1 1.8934 -3.9891 -0.6220 47 1 2.9688 -3.7638 0.7856 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045998657.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:01 Heat of formation + Delta-G solvation = 54.378309 kcal Electronic energy + Delta-G solvation = -30634.647633 eV Core-core repulsion = 26434.618530 eV Total energy + Delta-G solvation = -4200.029103 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.00106 -40.25561 -38.77562 -38.15567 -36.88754 -34.54177 -33.84887 -32.65371 -31.93960 -31.09122 -29.14948 -28.27381 -26.37413 -25.44272 -25.18387 -24.10732 -23.43642 -22.04231 -20.18759 -20.02327 -19.78748 -19.55933 -18.63212 -17.77087 -17.46440 -16.92769 -16.45021 -15.77984 -15.53222 -15.09500 -14.96298 -14.86125 -14.76302 -14.54320 -14.03726 -13.95219 -13.77419 -13.37730 -13.19216 -13.01058 -12.94454 -12.70243 -12.18859 -12.13619 -11.68054 -11.43755 -11.37699 -11.27367 -10.94684 -10.68442 -10.51513 -10.42544 -10.39689 -10.33502 -10.25648 -10.10940 -9.96654 -9.83126 -9.48777 -8.98200 -8.34920 -8.17457 -6.89360 -6.06307 -3.04870 -0.26171 0.04492 2.00204 2.44538 2.72763 2.92567 3.39411 3.53830 3.58568 3.76059 3.81447 3.94659 4.00172 4.14629 4.27152 4.65040 4.76677 4.89633 4.91459 5.02507 5.12840 5.21061 5.21723 5.24596 5.31978 5.43854 5.46426 5.50989 5.65474 5.74486 5.79239 5.83703 5.88445 6.00534 6.13668 6.23342 6.36348 6.40146 6.59466 6.61742 6.62499 6.99643 7.02192 7.10569 7.19007 7.36066 7.59775 7.83529 7.87503 8.53508 9.07674 9.87842 10.42941 11.28159 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023856 B = 0.002137 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.405115 B =13096.701417 C =13969.112716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.027 4.027 3 Si 1.063 2.937 4 H -0.294 1.294 5 H -0.294 1.294 6 H -0.286 1.286 7 C -0.334 4.334 8 H 0.066 0.934 9 N -0.603 5.603 10 C 0.146 3.854 11 C -0.126 4.126 12 C 0.073 3.927 13 H 0.044 0.956 14 N -0.527 5.527 15 C 0.040 3.960 16 C 0.117 3.883 17 N -0.586 5.586 18 C 0.575 3.425 19 O -0.531 6.531 20 C 0.020 3.980 21 C -0.048 4.048 22 C -0.136 4.136 23 C 0.275 3.725 24 O -0.471 6.471 25 N -0.258 5.258 26 N -0.175 5.175 27 C 0.076 3.924 28 C 0.048 3.952 29 C 0.147 3.853 30 H 0.268 0.732 31 H 0.054 0.946 32 H 0.023 0.977 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.036 0.964 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.168 0.832 40 H 0.165 0.835 41 H 0.411 0.589 42 H 0.073 0.927 43 H 0.140 0.860 44 H 0.091 0.909 45 H 0.037 0.963 46 H 0.017 0.983 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.173 -26.552 14.273 30.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.228 4.228 3 Si 0.893 3.107 4 H -0.221 1.221 5 H -0.221 1.221 6 H -0.211 1.211 7 C -0.462 4.462 8 H 0.084 0.916 9 N -0.330 5.330 10 C 0.020 3.980 11 C -0.164 4.164 12 C -0.036 4.036 13 H 0.062 0.938 14 N -0.252 5.252 15 C -0.088 4.088 16 C -0.005 4.005 17 N -0.317 5.317 18 C 0.360 3.640 19 O -0.407 6.407 20 C -0.126 4.126 21 C -0.077 4.077 22 C -0.166 4.166 23 C 0.091 3.909 24 O -0.278 6.278 25 N -0.111 5.111 26 N -0.023 5.023 27 C -0.047 4.047 28 C -0.081 4.081 29 C 0.021 3.979 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.040 0.960 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.054 0.946 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.114 0.886 39 H 0.185 0.815 40 H 0.183 0.817 41 H 0.271 0.729 42 H 0.091 0.909 43 H 0.156 0.844 44 H 0.110 0.890 45 H 0.055 0.945 46 H 0.035 0.965 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.564 -23.859 13.768 27.665 hybrid contribution 0.490 -3.199 -0.211 3.243 sum 3.054 -27.058 13.557 30.418 Atomic orbital electron populations 1.70790 1.06651 1.30152 1.48480 1.25693 0.96413 1.00898 0.99836 0.83549 0.74851 0.76161 0.76154 1.22100 1.22143 1.21149 1.19736 1.00510 0.88200 1.37742 0.91597 1.44506 1.32078 1.01424 1.55012 1.21515 0.90246 0.94720 0.91555 1.22888 0.99223 0.96270 0.98047 1.22661 0.94389 0.91185 0.95324 0.93815 1.62029 1.31672 1.12909 1.18629 1.22477 0.97465 0.94467 0.94422 1.21876 0.94016 0.94797 0.89804 1.48063 1.46716 1.04763 1.32199 1.17477 0.81939 0.82276 0.82348 1.90818 1.39937 1.65229 1.44722 1.22974 0.96326 0.94546 0.98795 1.22396 0.99625 0.93198 0.92488 1.22612 0.93164 1.02723 0.98139 1.21028 0.87621 0.89811 0.92442 1.84755 1.50250 1.73416 1.19375 1.73155 1.20898 1.09191 1.07844 1.73108 1.00364 1.25218 1.03645 1.23024 0.94977 0.94545 0.92182 1.22363 0.94299 0.95471 0.95977 1.21243 0.96140 0.85412 0.95063 0.92025 0.92748 0.95966 0.90646 0.92202 0.94596 0.88747 0.90008 0.88640 0.81464 0.81731 0.72941 0.90872 0.84393 0.89031 0.94460 0.96532 0.94479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.21 12.83 55.49 0.71 -27.50 16 2 C -0.03 -0.79 5.06 -17.43 -0.09 -0.88 16 3 Si 1.06 25.79 30.01 -169.99 -5.10 20.69 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.33 -9.65 10.03 -15.06 -0.15 -9.80 16 8 H 0.07 1.89 7.98 -52.49 -0.42 1.48 16 9 N -0.60 -15.67 3.33 -170.08 -0.57 -16.24 16 10 C 0.15 3.45 5.24 -2.53 -0.01 3.43 16 11 C -0.13 -2.29 5.34 -24.58 -0.13 -2.42 16 12 C 0.07 1.27 2.64 -65.87 -0.17 1.10 16 13 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 14 N -0.53 -7.70 4.45 -224.14 -1.00 -8.70 16 15 C 0.04 0.53 5.46 -3.70 -0.02 0.51 16 16 C 0.12 1.37 6.58 -3.60 -0.02 1.35 16 17 N -0.59 -6.87 3.01 -173.53 -0.52 -7.40 16 18 C 0.58 6.80 7.62 -12.29 -0.09 6.71 16 19 O -0.53 -7.34 16.04 5.33 0.09 -7.25 16 20 C 0.02 0.19 6.56 -82.85 -0.54 -0.35 16 21 C -0.05 -0.32 9.71 -38.87 -0.38 -0.70 16 22 C -0.14 -0.68 10.14 -39.11 -0.40 -1.07 16 23 C 0.28 1.92 7.85 -16.77 -0.13 1.79 16 24 O -0.47 -2.39 13.56 -18.25 -0.25 -2.64 16 25 N -0.26 -2.56 11.54 30.54 0.35 -2.21 16 26 N -0.17 -1.83 7.59 33.32 0.25 -1.58 16 27 C 0.08 0.84 6.36 -3.60 -0.02 0.82 16 28 C 0.05 0.60 5.46 -3.70 -0.02 0.58 16 29 C 0.15 3.15 5.73 -3.06 -0.02 3.13 16 30 H 0.27 8.24 5.95 -40.82 -0.24 8.00 16 31 H 0.05 1.41 7.72 -51.93 -0.40 1.01 16 32 H 0.02 0.56 6.88 -51.93 -0.36 0.21 16 33 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 34 H 0.06 0.95 7.93 -51.93 -0.41 0.54 16 35 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.09 1.27 6.84 -51.93 -0.36 0.91 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.10 1.10 7.10 -51.92 -0.37 0.73 16 39 H 0.17 0.85 7.84 -52.49 -0.41 0.44 16 40 H 0.17 0.26 8.06 -52.49 -0.42 -0.16 16 41 H 0.41 -0.11 9.06 45.56 0.41 0.30 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.14 1.48 3.78 -131.39 -0.50 0.98 16 44 H 0.09 1.13 6.77 -51.93 -0.35 0.78 16 45 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.04 0.80 7.74 -51.93 -0.40 0.40 16 LS Contribution 374.09 15.07 5.64 5.64 Total: -1.00 -36.06 374.09 -8.58 -44.64 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -5.98 Total: -1.65 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: -2.21 Total: 4.19 kcal Atomic # 7 Polarization: -62.85 SS G_CDS: -0.77 Total: -63.62 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: -0.16 Total: -9.89 kcal Atomic # 14 Polarization: 25.79 SS G_CDS: -5.10 Total: 20.69 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.06 -8.58 -44.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045998657.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.023 kcal (2) G-P(sol) polarization free energy of solvation -36.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds