Wall clock time and date at job start Wed Apr 1 2020 05:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 119.99874 * 2 1 4 4 H 1.48504 * 109.46924 * 239.99770 * 3 2 1 5 5 H 1.48499 * 109.47194 * 120.00124 * 3 2 1 6 6 H 1.48500 * 109.47458 * 359.97438 * 3 2 1 7 7 C 1.38814 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99790 * 150.93059 * 7 2 1 9 9 N 1.36937 * 119.99907 * 330.92848 * 7 2 1 10 10 C 1.47422 * 125.64875 * 347.58851 * 9 7 2 11 11 C 1.54902 * 104.83341 * 204.09242 * 10 9 7 12 12 C 1.55160 * 101.58043 * 322.98985 * 11 10 9 13 13 H 1.08997 * 110.72541 * 276.95935 * 12 11 10 14 14 N 1.46902 * 110.71669 * 153.86371 * 12 11 10 15 15 C 1.46902 * 110.99857 * 184.12387 * 14 12 11 16 16 C 1.53236 * 109.34109 * 172.74652 * 15 14 12 17 17 N 1.47088 * 108.52177 * 53.83054 * 16 15 14 18 18 C 1.34772 * 120.88248 * 128.79367 * 17 16 15 19 19 O 1.21546 * 120.00219 * 5.76238 * 18 17 16 20 20 C 1.47931 * 119.99917 * 185.76939 * 18 17 16 21 21 C 1.39982 * 120.11878 * 200.04966 * 20 18 17 22 22 C 1.38410 * 117.97156 * 179.97438 * 21 20 18 23 23 C 1.39348 * 118.03822 * 359.97438 * 22 21 20 24 24 O 1.35519 * 120.02892 * 180.02562 * 23 22 21 25 25 N 1.32674 * 119.94289 * 0.02562 * 23 22 21 26 26 N 1.28355 * 122.19333 * 359.72828 * 25 23 22 27 27 C 1.47084 * 118.23465 * 308.81459 * 17 16 15 28 28 C 1.46895 * 111.00244 * 59.82363 * 14 12 11 29 29 C 1.47016 * 125.64777 * 167.28388 * 9 7 2 30 30 H 0.97003 * 120.00139 * 174.64115 * 1 2 3 31 31 H 1.08997 * 110.36760 * 322.93335 * 10 9 7 32 32 H 1.09001 * 110.36403 * 85.14284 * 10 9 7 33 33 H 1.09002 * 111.00562 * 81.06602 * 11 10 9 34 34 H 1.09006 * 111.00822 * 204.88100 * 11 10 9 35 35 H 1.09007 * 109.49336 * 292.70841 * 15 14 12 36 36 H 1.09003 * 109.49684 * 52.78621 * 15 14 12 37 37 H 1.08995 * 109.63058 * 294.12252 * 16 15 14 38 38 H 1.09008 * 109.78998 * 173.63151 * 16 15 14 39 39 H 1.07999 * 121.01266 * 359.95257 * 21 20 18 40 40 H 1.08002 * 120.98192 * 180.02562 * 22 21 20 41 41 H 0.96701 * 113.99844 * 90.00894 * 24 23 22 42 42 H 1.09000 * 109.62541 * 291.47815 * 27 17 16 43 43 H 1.08997 * 109.78812 * 170.98712 * 27 17 16 44 44 H 1.09004 * 109.49342 * 307.21235 * 28 14 12 45 45 H 1.09000 * 109.49560 * 67.26059 * 28 14 12 46 46 H 1.09002 * 109.88260 * 298.39214 * 29 9 7 47 47 H 1.09003 * 109.88483 * 59.55360 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 3.1039 1.6965 1.2125 6 1 1.2852 2.7465 -0.0006 7 6 2.0102 -1.2021 0.0005 8 1 2.9882 -1.2612 -0.4539 9 7 1.4550 -2.3131 0.5773 10 6 0.2655 -2.3255 1.4481 11 6 0.4122 -3.6099 2.3015 12 6 1.0261 -4.5978 1.2745 13 1 0.2475 -5.0449 0.6565 14 7 1.8068 -5.6384 1.9570 15 6 2.4708 -6.5195 0.9871 16 6 3.4138 -7.4723 1.7296 17 7 2.6481 -8.1653 2.7769 18 6 2.6808 -9.5084 2.8836 19 8 3.4287 -10.1561 2.1776 20 6 1.8063 -10.1944 3.8598 21 6 2.1088 -11.4944 4.2817 22 6 1.2607 -12.0938 5.1966 23 6 0.1585 -11.3668 5.6421 24 8 -0.6980 -11.9145 6.5383 25 7 -0.0518 -10.1380 5.1881 26 7 0.7350 -9.5772 4.3432 27 6 1.8455 -7.3536 3.7045 28 6 0.9644 -6.4055 2.8842 29 6 1.9425 -3.6917 0.4255 30 1 -0.4850 -0.8364 -0.0785 31 1 0.2550 -1.4437 2.0886 32 1 -0.6435 -2.3685 0.8481 33 1 1.0896 -3.4468 3.1398 34 1 -0.5593 -3.9610 2.6496 35 1 1.7205 -7.0975 0.4476 36 1 3.0435 -5.9177 0.2815 37 1 4.2249 -6.9039 2.1845 38 1 3.8245 -8.2027 1.0324 39 1 2.9772 -12.0139 3.9045 40 1 1.4481 -13.0951 5.5554 41 1 -0.4627 -11.7458 7.4609 42 1 2.5061 -6.7738 4.3492 43 1 1.2167 -8.0029 4.3136 44 1 0.4445 -5.7210 3.5545 45 1 0.2347 -6.9847 2.3184 46 1 1.8934 -3.9891 -0.6220 47 1 2.9688 -3.7638 0.7856 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045998657.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:00 Heat of formation + Delta-G solvation = 24.371645 kcal Electronic energy + Delta-G solvation = -30635.948820 eV Core-core repulsion = 26434.618530 eV Total energy + Delta-G solvation = -4201.330290 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.62542 -41.16594 -40.04561 -38.65227 -38.29665 -35.88131 -34.40581 -34.06183 -33.13783 -32.01257 -30.94164 -29.67215 -27.62503 -26.52154 -25.92868 -25.54574 -24.60351 -22.98667 -21.89022 -21.39657 -20.76026 -20.19257 -19.62000 -19.35123 -18.46018 -17.60121 -17.33593 -16.97709 -16.57651 -16.37488 -15.98884 -15.78783 -15.66242 -15.60685 -15.36580 -15.12565 -15.00147 -14.85346 -14.53904 -14.27566 -13.81068 -13.72993 -13.39270 -13.28101 -13.16257 -12.68537 -12.57589 -12.45447 -12.42914 -12.20829 -11.96879 -11.87851 -11.79565 -11.68697 -11.57303 -11.47792 -11.14609 -10.93201 -10.56876 -10.49735 -9.95305 -9.35727 -9.03268 -8.35325 -5.30292 -0.83437 -0.45232 1.28212 1.57830 1.62779 1.66467 1.85531 2.19751 2.28365 2.59335 2.71005 2.84326 3.17933 3.22843 3.47833 3.55599 3.60357 3.67400 3.84599 3.85533 3.90443 3.99676 4.14902 4.20978 4.31073 4.34164 4.40222 4.43426 4.52310 4.60728 4.70134 4.75747 4.81454 4.82620 4.87701 4.90419 4.95132 5.02966 5.07933 5.12581 5.31327 5.34669 5.64902 5.94322 6.02514 6.17032 6.30762 6.44462 6.72702 6.89414 7.27312 7.70986 8.28694 8.99044 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023856 B = 0.002137 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.405115 B =13096.701417 C =13969.112716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.080 4.080 3 Si 1.117 2.883 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.291 1.291 7 C -0.347 4.347 8 H 0.061 0.939 9 N -0.626 5.626 10 C 0.148 3.852 11 C -0.106 4.106 12 C 0.090 3.910 13 H 0.044 0.956 14 N -0.528 5.528 15 C 0.043 3.957 16 C 0.123 3.877 17 N -0.590 5.590 18 C 0.576 3.424 19 O -0.556 6.556 20 C 0.002 3.998 21 C -0.047 4.047 22 C -0.114 4.114 23 C 0.280 3.720 24 O -0.477 6.477 25 N -0.291 5.291 26 N -0.193 5.193 27 C 0.083 3.917 28 C 0.049 3.951 29 C 0.147 3.853 30 H 0.255 0.745 31 H 0.023 0.977 32 H 0.003 0.997 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.032 0.968 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.184 0.816 40 H 0.206 0.794 41 H 0.434 0.566 42 H 0.078 0.922 43 H 0.149 0.851 44 H 0.099 0.901 45 H 0.032 0.968 46 H 0.009 0.991 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.899 -28.839 16.145 33.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.276 4.276 3 Si 0.941 3.059 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.217 1.217 7 C -0.475 4.475 8 H 0.079 0.921 9 N -0.354 5.354 10 C 0.022 3.978 11 C -0.144 4.144 12 C -0.019 4.019 13 H 0.061 0.939 14 N -0.253 5.253 15 C -0.085 4.085 16 C 0.001 3.999 17 N -0.321 5.321 18 C 0.362 3.638 19 O -0.434 6.434 20 C -0.145 4.145 21 C -0.075 4.075 22 C -0.143 4.143 23 C 0.095 3.905 24 O -0.287 6.287 25 N -0.144 5.144 26 N -0.042 5.042 27 C -0.040 4.040 28 C -0.079 4.079 29 C 0.022 3.978 30 H 0.065 0.935 31 H 0.042 0.958 32 H 0.021 0.979 33 H 0.099 0.901 34 H 0.108 0.892 35 H 0.050 0.950 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.115 0.885 39 H 0.201 0.799 40 H 0.223 0.777 41 H 0.298 0.702 42 H 0.096 0.904 43 H 0.165 0.835 44 H 0.117 0.883 45 H 0.050 0.950 46 H 0.027 0.973 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.298 -26.185 15.678 30.697 hybrid contribution 0.225 -2.643 -0.743 2.755 sum 3.522 -28.828 14.935 32.658 Atomic orbital electron populations 1.70905 1.07603 1.29398 1.50999 1.27151 0.96527 1.04397 0.99486 0.82841 0.73863 0.71893 0.77339 1.20018 1.20666 1.21668 1.20013 1.00373 0.89652 1.37491 0.92095 1.44811 1.32634 1.02675 1.55266 1.21442 0.88835 0.96274 0.91255 1.22737 1.01089 0.93403 0.97206 1.22356 0.93583 0.91365 0.94573 0.93853 1.62000 1.31459 1.13153 1.18711 1.22470 0.97444 0.94337 0.94298 1.21778 0.93684 0.94511 0.89945 1.48133 1.46726 1.05079 1.32192 1.17760 0.81718 0.82070 0.82290 1.90794 1.41132 1.65651 1.45820 1.22801 0.96448 0.95848 0.99404 1.22619 1.00406 0.92045 0.92444 1.22959 0.91298 1.03771 0.96287 1.21205 0.87917 0.89082 0.92267 1.84718 1.50162 1.72979 1.20840 1.73041 1.21618 1.11132 1.08629 1.72920 1.00784 1.26151 1.04325 1.23020 0.94882 0.94285 0.91784 1.22425 0.94310 0.95581 0.95591 1.21322 0.96892 0.84139 0.95453 0.93464 0.95815 0.97917 0.90140 0.89168 0.94980 0.89263 0.89471 0.88461 0.79880 0.77690 0.70228 0.90380 0.83505 0.88319 0.94956 0.97305 0.94384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.71 12.83 21.65 0.28 -59.43 16 2 C -0.08 -4.75 5.06 84.86 0.43 -4.32 16 3 Si 1.12 52.50 30.01 68.60 2.06 54.56 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 7 C -0.35 -20.44 10.03 84.03 0.84 -19.60 16 8 H 0.06 3.56 7.98 -2.91 -0.02 3.54 16 9 N -0.63 -33.33 3.33 -692.00 -2.30 -35.63 16 10 C 0.15 7.19 5.24 86.85 0.45 7.64 16 11 C -0.11 -3.78 5.34 31.98 0.17 -3.61 16 12 C 0.09 3.11 2.64 46.11 0.12 3.23 16 13 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 14 N -0.53 -14.87 4.45 -863.05 -3.84 -18.72 16 15 C 0.04 1.11 5.46 86.38 0.47 1.58 16 16 C 0.12 2.78 6.58 86.35 0.57 3.35 16 17 N -0.59 -13.27 3.01 -821.22 -2.47 -15.74 16 18 C 0.58 13.09 7.62 86.81 0.66 13.75 16 19 O -0.56 -14.94 16.04 -3.86 -0.06 -15.00 16 20 C 0.00 0.03 6.56 42.00 0.28 0.30 16 21 C -0.05 -0.51 9.71 22.73 0.22 -0.29 16 22 C -0.11 -0.72 10.14 22.58 0.23 -0.49 16 23 C 0.28 3.17 7.85 84.83 0.67 3.84 16 24 O -0.48 -3.42 13.56 -88.22 -1.20 -4.62 16 25 N -0.29 -5.34 11.54 -170.01 -1.96 -7.30 16 26 N -0.19 -3.82 7.59 -48.51 -0.37 -4.19 16 27 C 0.08 1.73 6.36 86.35 0.55 2.28 16 28 C 0.05 1.17 5.46 86.38 0.47 1.64 16 29 C 0.15 6.35 5.73 86.73 0.50 6.85 16 30 H 0.25 16.32 5.95 -92.71 -0.55 15.77 16 31 H 0.02 1.27 7.72 -2.39 -0.02 1.25 16 32 H 0.00 0.16 6.88 -2.39 -0.02 0.14 16 33 H 0.08 2.82 8.14 -2.39 -0.02 2.81 16 34 H 0.09 2.70 7.93 -2.38 -0.02 2.68 16 35 H 0.03 0.86 8.14 -2.38 -0.02 0.84 16 36 H 0.09 2.38 6.84 -2.39 -0.02 2.36 16 37 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.10 2.19 7.10 -2.38 -0.02 2.17 16 39 H 0.18 1.36 7.84 -2.91 -0.02 1.34 16 40 H 0.21 -0.42 8.06 -2.91 -0.02 -0.44 16 41 H 0.43 -1.59 9.06 -74.06 -0.67 -2.26 16 42 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.15 2.97 3.78 -105.18 -0.40 2.57 16 44 H 0.10 2.22 6.77 -2.39 -0.02 2.21 16 45 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 47 H 0.04 1.64 7.74 -2.39 -0.02 1.62 16 Total: -1.00 -80.25 374.09 -3.07 -83.32 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: 0.17 Total: 6.60 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: 6.63 Total: 16.16 kcal Atomic # 7 Polarization: -130.34 SS G_CDS: -10.67 Total: -141.01 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -1.26 Total: -19.62 kcal Atomic # 14 Polarization: 52.50 SS G_CDS: 2.06 Total: 54.56 kcal Total: -80.25 -3.07 -83.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045998657.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.689 kcal (2) G-P(sol) polarization free energy of solvation -80.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds