Wall clock time and date at job start Wed Apr 1 2020 04:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 119.99735 * 2 1 4 4 H 1.48502 * 109.47312 * 270.00145 * 3 2 1 5 5 H 1.48498 * 109.47169 * 30.00448 * 3 2 1 6 6 H 1.48503 * 109.46819 * 150.00514 * 3 2 1 7 7 C 1.38806 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00001 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00086 * 359.97438 * 7 2 1 10 10 C 1.46827 * 125.38031 * 180.02562 * 9 7 2 11 11 C 1.51318 * 107.26200 * 181.17454 * 10 9 7 12 12 H 1.08997 * 108.83052 * 258.81933 * 11 10 9 13 13 C 1.51915 * 111.44329 * 140.46662 * 11 10 9 14 14 C 1.51328 * 112.94095 * 289.18387 * 13 11 10 15 15 C 1.51609 * 111.98855 * 303.77784 * 14 13 11 16 16 N 1.44510 * 112.73484 * 42.38219 * 15 14 13 17 17 C 1.34777 * 116.65216 * 154.48257 * 16 15 14 18 18 O 1.21281 * 120.00120 * 173.90866 * 17 16 15 19 19 C 1.50701 * 119.99720 * 353.91433 * 17 16 15 20 20 C 1.53005 * 109.47037 * 179.97438 * 19 17 16 21 21 C 1.50699 * 109.47251 * 179.97438 * 20 19 17 22 22 C 1.38234 * 120.40238 * 89.99986 * 21 20 19 23 23 N 1.31843 * 120.82178 * 179.97438 * 22 21 20 24 24 C 1.31866 * 121.74941 * 0.02562 * 23 22 21 25 25 C 1.38430 * 120.72971 * 0.02562 * 24 23 22 26 26 F 1.35101 * 120.44587 * 180.02562 * 25 24 23 27 27 C 1.38583 * 120.40543 * 269.72260 * 21 20 19 28 28 C 1.44114 * 126.69898 * 334.46190 * 16 15 14 29 29 H 1.08999 * 109.49121 * 255.23963 * 28 16 15 30 30 C 1.46902 * 125.37488 * 0.03119 * 9 7 2 31 31 H 0.97003 * 120.00247 * 359.97438 * 1 2 3 32 32 H 1.08994 * 109.84719 * 300.51848 * 10 9 7 33 33 H 1.09001 * 109.84121 * 61.42923 * 10 9 7 34 34 H 1.08997 * 109.66488 * 167.81026 * 13 11 10 35 35 H 1.08999 * 108.24820 * 49.56898 * 13 11 10 36 36 H 1.08991 * 108.96684 * 183.15461 * 14 13 11 37 37 H 1.09005 * 108.96025 * 64.39501 * 14 13 11 38 38 H 1.09003 * 108.83308 * 163.21887 * 15 14 13 39 39 H 1.08993 * 108.83262 * 281.65125 * 15 14 13 40 40 H 1.09005 * 109.47168 * 299.99346 * 19 17 16 41 41 H 1.08991 * 109.47488 * 59.99635 * 19 17 16 42 42 H 1.08995 * 109.46901 * 299.99917 * 20 19 17 43 43 H 1.09005 * 109.47080 * 59.99819 * 20 19 17 44 44 H 1.08004 * 119.59022 * 359.96023 * 22 21 20 45 45 H 1.08004 * 119.63953 * 180.02562 * 24 23 22 46 46 H 1.08002 * 120.80618 * 359.97438 * 27 21 20 47 47 H 1.08998 * 110.08890 * 42.88351 * 30 9 7 48 48 H 1.08998 * 110.08499 * 281.30313 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 1.9373 -3.7228 -0.0005 11 6 0.8111 -4.7329 -0.0302 12 1 0.6639 -5.1253 0.9760 13 6 1.1425 -5.9079 -0.9343 14 6 1.1362 -5.5424 -2.4027 15 6 -0.1874 -4.9407 -2.8323 16 7 -0.7108 -3.9980 -1.8701 17 6 -1.5411 -3.0482 -2.3444 18 8 -2.1022 -2.2950 -1.5770 19 6 -1.7725 -2.9222 -3.8282 20 6 -2.7496 -1.7758 -4.0965 21 6 -2.9805 -1.6493 -5.5803 22 6 -4.0021 -2.3519 -6.1917 23 7 -4.2118 -2.2470 -7.4891 24 6 -3.4634 -1.4754 -8.2528 25 6 -2.4210 -0.7423 -7.7121 26 9 -1.6581 0.0468 -8.4998 27 6 -2.1750 -0.8230 -6.3475 28 6 -0.4366 -3.9692 -0.4556 29 1 -1.2998 -4.3504 0.0900 30 6 -0.1370 -2.5257 -0.0007 31 1 -0.4851 0.8401 0.0004 32 1 2.5648 -3.8423 -0.8837 33 1 2.5372 -3.8548 0.8999 34 1 0.4233 -6.7105 -0.7712 35 1 2.1349 -6.2729 -0.6695 36 1 1.3253 -6.4396 -2.9919 37 1 1.9312 -4.8209 -2.5915 38 1 -0.0490 -4.4302 -3.7854 39 1 -0.9121 -5.7437 -2.9658 40 1 -0.8255 -2.7172 -4.3275 41 1 -2.1910 -3.8529 -4.2110 42 1 -3.6965 -1.9812 -3.5972 43 1 -2.3315 -0.8448 -3.7135 44 1 -4.6362 -2.9948 -5.5992 45 1 -3.6658 -1.4147 -9.3120 46 1 -1.3725 -0.2584 -5.8961 47 1 -0.5799 -1.8141 -0.6973 48 1 -0.5285 -2.3610 1.0031 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050214983.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:56 Heat of formation + Delta-G solvation = -7.813905 kcal Electronic energy + Delta-G solvation = -31463.345467 eV Core-core repulsion = 27240.699545 eV Total energy + Delta-G solvation = -4222.645921 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.16549 -40.64716 -40.22163 -37.82862 -35.43951 -34.66182 -33.15121 -32.11560 -31.79234 -30.31724 -29.44702 -27.29148 -25.66903 -25.27401 -23.97081 -23.81713 -22.24241 -21.74982 -20.56198 -19.17249 -17.84609 -17.61216 -17.50658 -17.13005 -16.88845 -16.34396 -16.00453 -15.80091 -15.44613 -14.78527 -14.57246 -14.13637 -14.08200 -14.00053 -13.74674 -13.58303 -13.57079 -13.33359 -13.02193 -12.81769 -12.38733 -12.18894 -12.09675 -11.98085 -11.63834 -11.51227 -11.13675 -11.00872 -10.91900 -10.78269 -10.56428 -10.33844 -10.21594 -10.00058 -9.95430 -9.86927 -9.81409 -9.58782 -9.12602 -8.90177 -8.44257 -7.88037 -6.70426 -5.53375 -2.96143 0.67625 0.86157 3.14799 3.34898 3.42427 3.47841 3.50127 3.54395 3.79190 4.19630 4.42483 4.53903 4.54858 4.69737 4.78504 4.88570 4.95957 5.02351 5.09155 5.12964 5.25398 5.33285 5.40435 5.49077 5.53333 5.58253 5.60066 5.67046 5.71730 5.74442 5.86924 5.94260 6.03517 6.09334 6.12095 6.21877 6.23339 6.26139 6.41325 6.47523 6.65271 6.75072 6.80822 7.16829 7.56508 7.60789 7.74690 7.84748 8.14819 8.56414 8.81035 9.31901 9.93402 10.56983 11.48609 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.009253 B = 0.003643 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3025.348098 B = 7684.594719 C = 9556.388798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.006 4.006 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.232 4.232 8 H 0.074 0.926 9 N -0.602 5.602 10 C 0.141 3.859 11 C -0.098 4.098 12 H 0.073 0.927 13 C -0.103 4.103 14 C -0.129 4.129 15 C 0.118 3.882 16 N -0.588 5.588 17 C 0.500 3.500 18 O -0.501 6.501 19 C -0.133 4.133 20 C -0.066 4.066 21 C -0.093 4.093 22 C 0.089 3.911 23 N -0.457 5.457 24 C 0.062 3.938 25 C 0.051 3.949 26 F -0.131 7.131 27 C -0.107 4.107 28 C 0.132 3.868 29 H 0.059 0.941 30 C 0.137 3.863 31 H 0.251 0.749 32 H 0.021 0.979 33 H 0.019 0.981 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.051 0.949 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.093 0.907 44 H 0.164 0.836 45 H 0.164 0.836 46 H 0.150 0.850 47 H 0.140 0.860 48 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.059 -10.863 -12.946 17.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.203 4.203 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.360 4.360 8 H 0.092 0.908 9 N -0.329 5.329 10 C 0.015 3.985 11 C -0.118 4.118 12 H 0.091 0.909 13 C -0.141 4.141 14 C -0.166 4.166 15 C -0.006 4.006 16 N -0.322 5.322 17 C 0.286 3.714 18 O -0.376 6.376 19 C -0.173 4.173 20 C -0.104 4.104 21 C -0.095 4.095 22 C -0.068 4.068 23 N -0.164 5.164 24 C -0.096 4.096 25 C 0.029 3.971 26 F -0.110 7.110 27 C -0.133 4.133 28 C 0.027 3.973 29 H 0.077 0.923 30 C 0.013 3.987 31 H 0.062 0.938 32 H 0.038 0.962 33 H 0.037 0.963 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.109 0.891 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.111 0.889 44 H 0.181 0.819 45 H 0.182 0.818 46 H 0.168 0.832 47 H 0.157 0.843 48 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -6.039 -10.720 -12.891 17.820 hybrid contribution 1.628 1.367 0.292 2.146 sum -4.411 -9.353 -12.599 16.299 Atomic orbital electron populations 1.69927 1.04415 1.24646 1.56290 1.24807 0.95682 0.97405 1.02386 0.86213 0.78625 0.84017 0.77452 1.21781 1.21670 1.20848 1.18978 0.90274 0.82520 1.44253 0.90814 1.44383 1.01865 0.99621 1.86996 1.20759 0.93759 0.86237 0.97728 1.21017 0.96165 0.95380 0.99202 0.90852 1.20781 1.01647 0.97280 0.94428 1.21109 0.97591 1.00944 0.96990 1.20747 0.95536 0.92275 0.92021 1.46595 1.46989 1.30564 1.08033 1.20428 0.80017 0.80570 0.90340 1.90757 1.47105 1.41310 1.58431 1.21690 1.01051 0.99779 0.94748 1.20375 1.01073 1.00412 0.88582 1.20969 0.95116 0.95588 0.97842 1.22833 0.95922 0.97553 0.90474 1.67730 1.25959 1.16401 1.06321 1.22852 0.91635 0.94073 1.01055 1.18848 0.93748 0.94950 0.89540 1.91530 1.74060 1.71791 1.73605 1.21738 1.00648 0.99143 0.91796 1.21200 0.95570 1.00946 0.79537 0.92342 1.22381 0.84091 0.91343 1.00911 0.93770 0.96164 0.96302 0.92380 0.91813 0.91058 0.91151 0.91108 0.93077 0.89072 0.89387 0.89196 0.88865 0.81856 0.81837 0.83179 0.84284 0.96296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.13 10.18 55.49 0.56 -26.56 16 2 C -0.01 -0.17 5.48 -17.44 -0.10 -0.27 16 3 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.23 -6.57 10.25 -15.06 -0.15 -6.73 16 8 H 0.07 2.03 7.83 -52.48 -0.41 1.62 16 9 N -0.60 -15.64 3.39 -172.87 -0.59 -16.23 16 10 C 0.14 2.94 6.70 -4.71 -0.03 2.91 16 11 C -0.10 -1.68 2.81 -92.35 -0.26 -1.94 16 12 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 13 C -0.10 -1.33 5.18 -28.13 -0.15 -1.47 16 14 C -0.13 -1.54 5.84 -28.28 -0.17 -1.70 16 15 C 0.12 1.46 5.70 -5.81 -0.03 1.43 16 16 N -0.59 -9.86 3.09 -169.84 -0.52 -10.38 16 17 C 0.50 8.77 6.89 -10.98 -0.08 8.69 16 18 O -0.50 -11.00 13.12 5.56 0.07 -10.93 16 19 C -0.13 -1.66 4.03 -27.88 -0.11 -1.77 16 20 C -0.07 -0.81 4.66 -27.88 -0.13 -0.94 16 21 C -0.09 -1.00 5.15 -104.50 -0.54 -1.54 16 22 C 0.09 0.91 10.86 -17.55 -0.19 0.72 16 23 N -0.46 -5.05 10.36 -13.19 -0.14 -5.18 16 24 C 0.06 0.63 11.17 -17.47 -0.20 0.43 16 25 C 0.05 0.55 7.35 -39.27 -0.29 0.26 16 26 F -0.13 -1.50 17.28 2.25 0.04 -1.46 16 27 C -0.11 -1.19 9.85 -39.21 -0.39 -1.58 16 28 C 0.13 2.55 3.26 -68.86 -0.22 2.33 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 C 0.14 3.47 4.64 -3.15 -0.01 3.45 16 31 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.02 0.42 6.70 -51.93 -0.35 0.07 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.97 7.10 -51.93 -0.37 0.60 16 38 H 0.07 0.78 6.07 -51.93 -0.31 0.47 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.09 1.11 7.40 -51.93 -0.38 0.73 16 41 H 0.09 0.85 7.91 -51.93 -0.41 0.44 16 42 H 0.09 1.07 8.05 -51.93 -0.42 0.66 16 43 H 0.09 1.37 8.05 -51.93 -0.42 0.95 16 44 H 0.16 1.29 8.06 -52.48 -0.42 0.87 16 45 H 0.16 1.23 8.06 -52.48 -0.42 0.81 16 46 H 0.15 1.63 8.06 -52.49 -0.42 1.20 16 47 H 0.14 3.84 3.07 -51.93 -0.16 3.68 16 48 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 377.86 15.07 5.69 5.69 Total: -1.00 -33.84 377.86 -9.96 -43.79 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -7.02 Total: 1.56 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -3.04 Total: 2.29 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: -0.68 Total: -58.36 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.07 Total: -10.93 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.84 -9.96 -43.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050214983.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.979 kcal (2) G-P(sol) polarization free energy of solvation -33.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds