Wall clock time and date at job start Wed Apr 1 2020 04:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 119.99735 * 2 1 4 4 H 1.48502 * 109.47312 * 270.00145 * 3 2 1 5 5 H 1.48498 * 109.47169 * 30.00448 * 3 2 1 6 6 H 1.48503 * 109.46819 * 150.00514 * 3 2 1 7 7 C 1.38806 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00001 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00086 * 359.97438 * 7 2 1 10 10 C 1.46827 * 125.38031 * 180.02562 * 9 7 2 11 11 C 1.51318 * 107.26200 * 181.17454 * 10 9 7 12 12 H 1.08997 * 108.83052 * 258.81933 * 11 10 9 13 13 C 1.51915 * 111.44329 * 140.46662 * 11 10 9 14 14 C 1.51328 * 112.94095 * 289.18387 * 13 11 10 15 15 C 1.51609 * 111.98855 * 303.77784 * 14 13 11 16 16 N 1.44510 * 112.73484 * 42.38219 * 15 14 13 17 17 C 1.34777 * 116.65216 * 154.48257 * 16 15 14 18 18 O 1.21281 * 120.00120 * 173.90866 * 17 16 15 19 19 C 1.50701 * 119.99720 * 353.91433 * 17 16 15 20 20 C 1.53005 * 109.47037 * 179.97438 * 19 17 16 21 21 C 1.50699 * 109.47251 * 179.97438 * 20 19 17 22 22 C 1.38234 * 120.40238 * 89.99986 * 21 20 19 23 23 N 1.31843 * 120.82178 * 179.97438 * 22 21 20 24 24 C 1.31866 * 121.74941 * 0.02562 * 23 22 21 25 25 C 1.38430 * 120.72971 * 0.02562 * 24 23 22 26 26 F 1.35101 * 120.44587 * 180.02562 * 25 24 23 27 27 C 1.38583 * 120.40543 * 269.72260 * 21 20 19 28 28 C 1.44114 * 126.69898 * 334.46190 * 16 15 14 29 29 H 1.08999 * 109.49121 * 255.23963 * 28 16 15 30 30 C 1.46902 * 125.37488 * 0.03119 * 9 7 2 31 31 H 0.97003 * 120.00247 * 359.97438 * 1 2 3 32 32 H 1.08994 * 109.84719 * 300.51848 * 10 9 7 33 33 H 1.09001 * 109.84121 * 61.42923 * 10 9 7 34 34 H 1.08997 * 109.66488 * 167.81026 * 13 11 10 35 35 H 1.08999 * 108.24820 * 49.56898 * 13 11 10 36 36 H 1.08991 * 108.96684 * 183.15461 * 14 13 11 37 37 H 1.09005 * 108.96025 * 64.39501 * 14 13 11 38 38 H 1.09003 * 108.83308 * 163.21887 * 15 14 13 39 39 H 1.08993 * 108.83262 * 281.65125 * 15 14 13 40 40 H 1.09005 * 109.47168 * 299.99346 * 19 17 16 41 41 H 1.08991 * 109.47488 * 59.99635 * 19 17 16 42 42 H 1.08995 * 109.46901 * 299.99917 * 20 19 17 43 43 H 1.09005 * 109.47080 * 59.99819 * 20 19 17 44 44 H 1.08004 * 119.59022 * 359.96023 * 22 21 20 45 45 H 1.08004 * 119.63953 * 180.02562 * 24 23 22 46 46 H 1.08002 * 120.80618 * 359.97438 * 27 21 20 47 47 H 1.08998 * 110.08890 * 42.88351 * 30 9 7 48 48 H 1.08998 * 110.08499 * 281.30313 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 1.9373 -3.7228 -0.0005 11 6 0.8111 -4.7329 -0.0302 12 1 0.6639 -5.1253 0.9760 13 6 1.1425 -5.9079 -0.9343 14 6 1.1362 -5.5424 -2.4027 15 6 -0.1874 -4.9407 -2.8323 16 7 -0.7108 -3.9980 -1.8701 17 6 -1.5411 -3.0482 -2.3444 18 8 -2.1022 -2.2950 -1.5770 19 6 -1.7725 -2.9222 -3.8282 20 6 -2.7496 -1.7758 -4.0965 21 6 -2.9805 -1.6493 -5.5803 22 6 -4.0021 -2.3519 -6.1917 23 7 -4.2118 -2.2470 -7.4891 24 6 -3.4634 -1.4754 -8.2528 25 6 -2.4210 -0.7423 -7.7121 26 9 -1.6581 0.0468 -8.4998 27 6 -2.1750 -0.8230 -6.3475 28 6 -0.4366 -3.9692 -0.4556 29 1 -1.2998 -4.3504 0.0900 30 6 -0.1370 -2.5257 -0.0007 31 1 -0.4851 0.8401 0.0004 32 1 2.5648 -3.8423 -0.8837 33 1 2.5372 -3.8548 0.8999 34 1 0.4233 -6.7105 -0.7712 35 1 2.1349 -6.2729 -0.6695 36 1 1.3253 -6.4396 -2.9919 37 1 1.9312 -4.8209 -2.5915 38 1 -0.0490 -4.4302 -3.7854 39 1 -0.9121 -5.7437 -2.9658 40 1 -0.8255 -2.7172 -4.3275 41 1 -2.1910 -3.8529 -4.2110 42 1 -3.6965 -1.9812 -3.5972 43 1 -2.3315 -0.8448 -3.7135 44 1 -4.6362 -2.9948 -5.5992 45 1 -3.6658 -1.4147 -9.3120 46 1 -1.3725 -0.2584 -5.8961 47 1 -0.5799 -1.8141 -0.6973 48 1 -0.5285 -2.3610 1.0031 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050214983.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:55 Heat of formation + Delta-G solvation = -28.790531 kcal Electronic energy + Delta-G solvation = -31464.255081 eV Core-core repulsion = 27240.699545 eV Total energy + Delta-G solvation = -4223.555536 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.02435 -41.95122 -41.13371 -39.26097 -36.98469 -35.66365 -34.67643 -33.71638 -32.72105 -31.66376 -30.83077 -28.81848 -27.35409 -26.40992 -25.33754 -24.73286 -23.39740 -23.01939 -22.15147 -20.53016 -19.28340 -18.81897 -18.45705 -18.31933 -17.88891 -17.61727 -17.21390 -17.01389 -16.84566 -16.29462 -16.04228 -15.72357 -15.16578 -15.05334 -15.01237 -14.65283 -14.54443 -14.29853 -14.13096 -14.01472 -13.81610 -13.60170 -13.48823 -13.15504 -13.10499 -12.97744 -12.93009 -12.69218 -12.40168 -12.12928 -12.01401 -11.86176 -11.71501 -11.55575 -11.36927 -11.32833 -10.82589 -10.75430 -10.66260 -10.24723 -9.88194 -9.28869 -8.81586 -7.70988 -5.17535 -0.13254 0.01190 1.41368 1.43558 1.52501 1.81927 2.24710 2.48492 2.58605 2.95778 3.34778 3.37475 3.52729 3.66540 3.72111 3.73820 3.83957 3.87836 3.92581 4.04122 4.06777 4.11799 4.14351 4.17103 4.38182 4.50101 4.63725 4.64626 4.67384 4.74547 4.80074 4.81627 4.88672 4.91943 4.96088 5.01919 5.15935 5.18328 5.22077 5.24131 5.37129 5.43756 5.49821 5.52549 5.59406 5.88734 6.07956 6.48128 6.65923 6.76459 7.13381 7.45806 7.84638 8.45987 9.27405 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.009253 B = 0.003643 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3025.348098 B = 7684.594719 C = 9556.388798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.062 4.062 3 Si 0.972 3.028 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.270 1.270 7 C -0.246 4.246 8 H 0.078 0.922 9 N -0.623 5.623 10 C 0.137 3.863 11 C -0.091 4.091 12 H 0.080 0.920 13 C -0.098 4.098 14 C -0.127 4.127 15 C 0.105 3.895 16 N -0.589 5.589 17 C 0.486 3.514 18 O -0.558 6.558 19 C -0.119 4.119 20 C -0.057 4.057 21 C -0.093 4.093 22 C 0.097 3.903 23 N -0.469 5.469 24 C 0.070 3.930 25 C 0.041 3.959 26 F -0.137 7.137 27 C -0.115 4.115 28 C 0.145 3.855 29 H 0.056 0.944 30 C 0.137 3.863 31 H 0.242 0.758 32 H 0.029 0.971 33 H 0.017 0.983 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.114 0.886 37 H 0.047 0.953 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.130 0.870 42 H 0.091 0.909 43 H 0.057 0.943 44 H 0.188 0.812 45 H 0.190 0.810 46 H 0.144 0.856 47 H 0.119 0.881 48 H -0.035 1.035 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.566 -13.724 -15.404 21.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.256 4.256 3 Si 0.801 3.199 4 H -0.212 1.212 5 H -0.223 1.223 6 H -0.194 1.194 7 C -0.376 4.376 8 H 0.096 0.904 9 N -0.349 5.349 10 C 0.012 3.988 11 C -0.110 4.110 12 H 0.098 0.902 13 C -0.136 4.136 14 C -0.165 4.165 15 C -0.017 4.017 16 N -0.322 5.322 17 C 0.276 3.724 18 O -0.437 6.437 19 C -0.159 4.159 20 C -0.096 4.096 21 C -0.095 4.095 22 C -0.059 4.059 23 N -0.177 5.177 24 C -0.088 4.088 25 C 0.020 3.980 26 F -0.115 7.115 27 C -0.142 4.142 28 C 0.039 3.961 29 H 0.074 0.926 30 C 0.012 3.988 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.035 0.965 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.132 0.868 37 H 0.065 0.935 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.116 0.884 41 H 0.148 0.852 42 H 0.110 0.890 43 H 0.076 0.924 44 H 0.205 0.795 45 H 0.207 0.793 46 H 0.162 0.838 47 H 0.136 0.864 48 H -0.018 1.018 Dipole moment (debyes) X Y Z Total from point charges -5.499 -13.644 -15.379 21.281 hybrid contribution 1.492 2.255 1.093 2.916 sum -4.006 -11.389 -14.286 18.704 Atomic orbital electron populations 1.70231 1.05929 1.24545 1.57491 1.25635 0.96497 1.00756 1.02716 0.85176 0.77653 0.79594 0.77496 1.21164 1.22315 1.19447 1.19370 0.90759 0.83911 1.43513 0.90407 1.44677 1.02481 1.00979 1.86786 1.20980 0.95157 0.84947 0.97737 1.21002 0.93178 0.95753 1.01105 0.90205 1.20788 1.03308 0.95493 0.94023 1.21166 0.96342 1.02083 0.96866 1.21186 0.96763 0.92428 0.91275 1.46722 1.46650 1.31382 1.07456 1.21382 0.79170 0.79672 0.92224 1.90737 1.49416 1.43289 1.60257 1.21675 1.01638 1.01699 0.90843 1.20187 1.00894 0.98817 0.89662 1.20734 0.95820 0.96396 0.96575 1.23166 0.95314 0.97018 0.90448 1.67838 1.26264 1.16940 1.06629 1.23248 0.90579 0.92825 1.02173 1.18911 0.94314 0.95503 0.89295 1.91516 1.74303 1.72046 1.73664 1.21802 1.00772 0.99297 0.92300 1.20754 0.96611 0.97081 0.81629 0.92612 1.22153 0.83729 0.95304 0.97631 0.94850 0.95269 0.96470 0.89740 0.90186 0.86809 0.93462 0.89483 0.89506 0.88440 0.85216 0.89038 0.92439 0.79489 0.79347 0.83809 0.86408 1.01759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.28 10.18 21.65 0.22 -59.06 16 2 C -0.06 -3.71 5.48 84.86 0.47 -3.24 16 3 Si 0.97 47.62 29.55 68.60 2.03 49.65 16 4 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 5 H -0.30 -14.69 7.11 99.48 0.71 -13.99 16 6 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.25 -14.42 10.25 84.03 0.86 -13.56 16 8 H 0.08 4.36 7.83 -2.91 -0.02 4.33 16 9 N -0.62 -33.57 3.39 -700.82 -2.38 -35.94 16 10 C 0.14 5.69 6.70 85.77 0.57 6.27 16 11 C -0.09 -3.00 2.81 -11.92 -0.03 -3.03 16 12 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 13 C -0.10 -2.14 5.18 29.69 0.15 -1.98 16 14 C -0.13 -2.48 5.84 29.59 0.17 -2.30 16 15 C 0.11 2.19 5.70 86.29 0.49 2.68 16 16 N -0.59 -19.12 3.09 -809.63 -2.50 -21.61 16 17 C 0.49 17.19 6.89 87.66 0.60 17.79 16 18 O -0.56 -26.00 13.12 -3.03 -0.04 -26.04 16 19 C -0.12 -2.81 4.03 29.85 0.12 -2.69 16 20 C -0.06 -1.41 4.66 29.85 0.14 -1.27 16 21 C -0.09 -1.91 5.15 -19.78 -0.10 -2.01 16 22 C 0.10 1.74 10.86 84.69 0.92 2.66 16 23 N -0.47 -9.17 10.36 -195.66 -2.03 -11.20 16 24 C 0.07 1.25 11.17 84.73 0.95 2.20 16 25 C 0.04 0.85 7.35 22.47 0.17 1.01 16 26 F -0.14 -3.01 17.28 44.97 0.78 -2.23 16 27 C -0.12 -2.52 9.85 22.51 0.22 -2.30 16 28 C 0.14 5.68 3.26 45.66 0.15 5.83 16 29 H 0.06 2.19 8.14 -2.39 -0.02 2.18 16 30 C 0.14 7.33 4.64 86.74 0.40 7.73 16 31 H 0.24 15.14 8.31 -92.71 -0.77 14.36 16 32 H 0.03 1.17 6.70 -2.39 -0.02 1.16 16 33 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.08 1.53 8.10 -2.39 -0.02 1.52 16 36 H 0.11 1.34 8.14 -2.39 -0.02 1.33 16 37 H 0.05 1.15 7.10 -2.38 -0.02 1.13 16 38 H 0.09 1.56 6.07 -2.39 -0.01 1.55 16 39 H 0.09 1.28 8.14 -2.39 -0.02 1.27 16 40 H 0.10 2.21 7.40 -2.38 -0.02 2.20 16 41 H 0.13 1.99 7.91 -2.39 -0.02 1.97 16 42 H 0.09 2.20 8.05 -2.39 -0.02 2.18 16 43 H 0.06 1.83 8.05 -2.38 -0.02 1.81 16 44 H 0.19 2.36 8.06 -2.91 -0.02 2.34 16 45 H 0.19 2.31 8.06 -2.91 -0.02 2.29 16 46 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 47 H 0.12 6.95 3.07 -2.39 -0.01 6.94 16 48 H -0.04 -2.20 8.14 -2.39 -0.02 -2.22 16 Total: -1.00 -80.42 377.86 3.31 -77.11 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 0.97 Total: 15.53 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: 6.25 Total: 13.80 kcal Atomic # 7 Polarization: -121.14 SS G_CDS: -6.68 Total: -127.82 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.04 Total: -26.04 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.78 Total: -2.23 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.65 kcal Total: -80.42 3.31 -77.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050214983.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.319 kcal (2) G-P(sol) polarization free energy of solvation -80.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds