Wall clock time and date at job start Wed Apr 1 2020 05:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99860 * 2 1 4 4 H 1.48504 * 109.47039 * 240.00238 * 3 2 1 5 5 H 1.48505 * 109.47089 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47227 * 119.99862 * 3 2 1 7 7 C 1.38812 * 120.00523 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00276 * 197.00436 * 7 2 1 9 9 N 1.36940 * 119.99445 * 16.99975 * 7 2 1 10 10 C 1.47081 * 120.88008 * 206.57802 * 9 7 2 11 11 C 1.53235 * 108.52102 * 231.21315 * 10 9 7 12 12 N 1.46899 * 109.33864 * 306.16630 * 11 10 9 13 13 C 1.46904 * 111.00128 * 187.25493 * 12 11 10 14 14 H 1.09005 * 110.88674 * 297.57660 * 13 12 11 15 15 C 1.55160 * 111.00197 * 173.65252 * 13 12 11 16 16 C 1.54325 * 102.93738 * 206.42566 * 15 13 12 17 17 N 1.47017 * 107.27641 * 22.19112 * 16 15 13 18 18 C 1.34774 * 125.65519 * 181.02048 * 17 16 15 19 19 O 1.21540 * 120.00577 * 180.02562 * 18 17 16 20 20 C 1.47934 * 119.99495 * 0.04914 * 18 17 16 21 21 C 1.39981 * 120.11569 * 179.72336 * 20 18 17 22 22 C 1.38420 * 117.97025 * 179.77999 * 21 20 18 23 23 C 1.39351 * 118.03438 * 0.48497 * 22 21 20 24 24 O 1.35524 * 120.02899 * 179.72905 * 23 22 21 25 25 N 1.32675 * 119.94425 * 359.74141 * 23 22 21 26 26 N 1.28356 * 122.19705 * 0.02562 * 25 23 22 27 27 C 1.47423 * 108.70195 * 1.06118 * 17 16 15 28 28 C 1.46905 * 111.26693 * 63.10788 * 12 11 10 29 29 C 1.47074 * 120.88099 * 26.60929 * 9 7 2 30 30 H 0.97000 * 119.99781 * 0.02562 * 1 2 3 31 31 H 1.08995 * 109.62622 * 111.50063 * 10 9 7 32 32 H 1.09003 * 109.62424 * 350.91888 * 10 9 7 33 33 H 1.09004 * 109.49447 * 186.21224 * 11 10 9 34 34 H 1.08998 * 109.52055 * 66.13924 * 11 10 9 35 35 H 1.08993 * 110.72344 * 324.78525 * 15 13 12 36 36 H 1.08994 * 110.71893 * 88.06644 * 15 13 12 37 37 H 1.09001 * 109.88200 * 262.77633 * 16 15 13 38 38 H 1.09003 * 110.01355 * 141.68544 * 16 15 13 39 39 H 1.07997 * 121.01694 * 0.02562 * 21 20 18 40 40 H 1.07999 * 120.98329 * 180.25361 * 22 21 20 41 41 H 0.96695 * 113.99652 * 270.01875 * 24 23 22 42 42 H 1.08996 * 110.36945 * 217.03317 * 27 17 16 43 43 H 1.09001 * 110.36906 * 94.70914 * 27 17 16 44 44 H 1.08999 * 109.49350 * 56.85742 * 28 12 11 45 45 H 1.09002 * 109.49168 * 176.93084 * 28 12 11 46 46 H 1.09010 * 109.62596 * 248.49763 * 29 9 7 47 47 H 1.09001 * 109.63291 * 9.07099 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0550 -1.2224 0.2741 9 7 1.3705 -2.3623 -0.3457 10 6 1.8312 -3.6609 0.1688 11 6 2.0033 -4.6197 -1.0139 12 7 0.7560 -4.6656 -1.7885 13 6 0.8202 -5.7006 -2.8291 14 1 1.6117 -5.4822 -3.5461 15 6 -0.5489 -5.8583 -3.5418 16 6 -0.5149 -7.3199 -4.0361 17 7 0.4593 -8.0399 -3.2030 18 6 0.7937 -9.3392 -3.3307 19 8 1.6152 -9.8317 -2.5824 20 6 0.1613 -10.1658 -4.3819 21 6 0.5110 -11.5141 -4.5205 22 6 -0.1116 -12.2473 -5.5158 23 6 -1.0404 -11.5962 -6.3253 24 8 -1.6699 -12.2739 -7.3158 25 7 -1.3077 -10.3121 -6.1257 26 7 -0.7358 -9.6301 -5.2009 27 6 1.0092 -7.1054 -2.2042 28 6 0.4411 -3.3537 -2.3696 29 6 0.2050 -2.3428 -1.2424 30 1 -0.4850 0.8401 -0.0004 31 1 1.0922 -4.0631 0.8618 32 1 2.7857 -3.5345 0.6797 33 1 2.2375 -5.6174 -0.6423 34 1 2.8148 -4.2694 -1.6517 35 1 -1.3689 -5.7077 -2.8397 36 1 -0.6279 -5.1688 -4.3822 37 1 -0.2041 -7.3509 -5.0804 38 1 -1.5005 -7.7729 -3.9292 39 1 1.2413 -11.9695 -3.8681 40 1 0.1184 -13.2922 -5.6632 41 1 -1.2075 -12.2492 -8.1647 42 1 2.0673 -7.3073 -2.0378 43 1 0.4559 -7.1817 -1.2682 44 1 1.2742 -3.0204 -2.9884 45 1 -0.4577 -3.4331 -2.9813 46 1 -0.6904 -2.6184 -0.6851 47 1 0.0842 -1.3452 -1.6646 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051977273.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:52 Heat of formation + Delta-G solvation = 43.114840 kcal Electronic energy + Delta-G solvation = -30320.093394 eV Core-core repulsion = 26119.575870 eV Total energy + Delta-G solvation = -4200.517524 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.83271 -40.16402 -38.63731 -38.05594 -36.87154 -34.24353 -33.77156 -32.42660 -31.50625 -30.34688 -30.07364 -28.47938 -26.41035 -25.61049 -24.87704 -23.66287 -22.81734 -22.23016 -20.57715 -20.24463 -19.72660 -19.13879 -18.54229 -17.58573 -17.09907 -16.76922 -16.26603 -15.98175 -15.34819 -14.94300 -14.84483 -14.40528 -14.26428 -14.14795 -13.97781 -13.84395 -13.45339 -13.33126 -13.17139 -13.08105 -12.83906 -12.65619 -12.47462 -12.18518 -11.70948 -11.27431 -11.19213 -11.02240 -10.95441 -10.81493 -10.72176 -10.45203 -10.41860 -10.29186 -10.28682 -10.09046 -10.03396 -9.71946 -9.59698 -8.84406 -8.49761 -7.89485 -6.65931 -5.77298 -3.18236 -0.19562 0.12881 2.13276 2.46315 2.75093 3.09946 3.39081 3.44870 3.45203 3.45993 3.90137 4.05872 4.21431 4.27332 4.33361 4.51045 4.56720 4.67699 4.96742 5.10730 5.19293 5.26906 5.30969 5.35341 5.40433 5.48084 5.62743 5.78568 5.81756 5.87249 5.92811 5.98355 6.03131 6.14472 6.19391 6.29124 6.33933 6.53685 6.64756 6.69153 6.93433 7.16221 7.24564 7.56097 7.63206 7.66888 7.69609 7.81885 7.96707 8.44444 9.22305 9.85637 10.43975 11.31525 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.031885 B = 0.001952 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.941972 B =14342.056680 C =14962.429945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.595 5.595 10 C 0.149 3.851 11 C 0.041 3.959 12 N -0.520 5.520 13 C 0.068 3.932 14 H 0.051 0.949 15 C -0.126 4.126 16 C 0.112 3.888 17 N -0.592 5.592 18 C 0.587 3.413 19 O -0.531 6.531 20 C 0.020 3.980 21 C -0.047 4.047 22 C -0.140 4.140 23 C 0.273 3.727 24 O -0.472 6.472 25 N -0.257 5.257 26 N -0.176 5.176 27 C 0.115 3.885 28 C 0.036 3.964 29 C 0.178 3.822 30 H 0.254 0.746 31 H 0.026 0.974 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.029 0.971 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.168 0.832 40 H 0.164 0.836 41 H 0.410 0.590 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.025 0.975 45 H 0.064 0.936 46 H 0.027 0.973 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.862 -24.437 -14.655 28.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.319 5.319 10 C 0.022 3.978 11 C -0.088 4.088 12 N -0.246 5.246 13 C -0.041 4.041 14 H 0.069 0.931 15 C -0.165 4.165 16 C -0.011 4.011 17 N -0.324 5.324 18 C 0.372 3.628 19 O -0.407 6.407 20 C -0.127 4.127 21 C -0.076 4.076 22 C -0.170 4.170 23 C 0.089 3.911 24 O -0.279 6.279 25 N -0.110 5.110 26 N -0.026 5.026 27 C -0.007 4.007 28 C -0.092 4.092 29 C 0.052 3.948 30 H 0.064 0.936 31 H 0.044 0.956 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.047 0.953 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.186 0.814 40 H 0.182 0.818 41 H 0.270 0.730 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.044 0.956 45 H 0.082 0.918 46 H 0.045 0.955 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.165 -23.592 -13.997 27.517 hybrid contribution 2.062 -0.211 -0.687 2.184 sum -0.102 -23.803 -14.684 27.968 Atomic orbital electron populations 1.70016 1.05169 1.25572 1.54038 1.25018 0.95313 0.98326 1.01081 0.86370 0.78891 0.83426 0.78075 1.21147 1.21628 1.20916 1.19147 0.92548 0.84796 1.41644 0.91721 1.44116 1.34155 1.01251 1.52350 1.20970 0.97828 0.86429 0.92524 1.22682 0.89549 0.99594 0.97017 1.62025 1.34361 1.05553 1.22639 1.22753 0.96778 0.91373 0.93234 0.93067 1.22787 0.98271 0.94540 1.00858 1.22249 0.92628 0.91481 0.94739 1.48265 1.41573 1.08422 1.34171 1.16993 0.82023 0.80682 0.83068 1.90833 1.33857 1.71573 1.44417 1.22866 0.97670 0.94265 0.97913 1.22426 0.97107 0.92515 0.95522 1.22592 0.95264 1.03032 0.96128 1.21078 0.89320 0.89380 0.91327 1.84743 1.50813 1.70501 1.21810 1.73149 1.19102 1.05606 1.13164 1.73562 1.03054 1.27509 0.98430 1.22360 0.99749 0.86921 0.91669 1.22919 0.98804 0.88792 0.98734 1.20870 0.88992 0.96531 0.88392 0.93571 0.95581 0.92600 0.91866 0.95294 0.89095 0.89917 0.90448 0.90218 0.81408 0.81831 0.73032 0.90277 0.89532 0.95646 0.91772 0.95502 0.89314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.07 11.15 55.49 0.62 -25.45 16 2 C 0.00 0.03 4.94 -17.43 -0.09 -0.06 16 3 Si 0.90 21.63 29.59 -169.99 -5.03 16.60 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.25 -6.89 9.63 -15.06 -0.15 -7.04 16 8 H 0.07 1.74 7.88 -52.49 -0.41 1.32 16 9 N -0.60 -14.91 3.04 -172.02 -0.52 -15.43 16 10 C 0.15 3.13 6.69 -3.60 -0.02 3.11 16 11 C 0.04 0.71 5.48 -3.70 -0.02 0.69 16 12 N -0.52 -8.73 4.53 -223.77 -1.01 -9.74 16 13 C 0.07 0.93 2.72 -65.56 -0.18 0.75 16 14 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 15 C -0.13 -1.45 5.34 -24.89 -0.13 -1.59 16 16 C 0.11 1.21 5.41 -3.07 -0.02 1.19 16 17 N -0.59 -7.30 3.33 -171.60 -0.57 -7.87 16 18 C 0.59 7.41 7.84 -12.29 -0.10 7.32 16 19 O -0.53 -7.89 16.64 5.33 0.09 -7.80 16 20 C 0.02 0.20 6.80 -82.84 -0.56 -0.36 16 21 C -0.05 -0.35 9.72 -38.86 -0.38 -0.72 16 22 C -0.14 -0.77 10.14 -39.10 -0.40 -1.17 16 23 C 0.27 2.02 7.85 -16.77 -0.13 1.89 16 24 O -0.47 -2.53 13.56 -18.27 -0.25 -2.78 16 25 N -0.26 -2.64 11.54 30.55 0.35 -2.28 16 26 N -0.18 -1.90 8.06 33.32 0.27 -1.64 16 27 C 0.12 1.50 5.31 -2.53 -0.01 1.49 16 28 C 0.04 0.68 5.48 -3.70 -0.02 0.66 16 29 C 0.18 4.20 5.42 -3.61 -0.02 4.18 16 30 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 1.13 7.95 -51.93 -0.41 0.72 16 33 H 0.06 0.96 6.79 -51.93 -0.35 0.61 16 34 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.08 0.87 7.94 -51.93 -0.41 0.46 16 37 H 0.08 0.81 7.42 -51.93 -0.39 0.42 16 38 H 0.08 0.85 7.54 -51.93 -0.39 0.46 16 39 H 0.17 1.00 7.71 -52.49 -0.40 0.60 16 40 H 0.16 0.35 8.06 -52.49 -0.42 -0.07 16 41 H 0.41 0.02 9.06 45.56 0.41 0.43 16 42 H 0.08 1.06 7.74 -51.93 -0.40 0.66 16 43 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 1.06 6.87 -51.93 -0.36 0.70 16 46 H 0.03 0.68 8.14 -51.92 -0.42 0.26 16 47 H 0.09 2.33 6.12 -51.93 -0.32 2.01 16 LS Contribution 377.90 15.07 5.69 5.69 Total: -1.00 -33.68 377.90 -8.54 -42.21 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -5.95 Total: -1.87 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: -2.22 Total: 10.35 kcal Atomic # 7 Polarization: -61.54 SS G_CDS: -0.87 Total: -62.41 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: -0.16 Total: -10.58 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.68 -8.54 -42.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051977273.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.325 kcal (2) G-P(sol) polarization free energy of solvation -33.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds