Wall clock time and date at job start Wed Apr 1 2020 05:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99860 * 2 1 4 4 H 1.48504 * 109.47039 * 240.00238 * 3 2 1 5 5 H 1.48505 * 109.47089 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47227 * 119.99862 * 3 2 1 7 7 C 1.38812 * 120.00523 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00276 * 197.00436 * 7 2 1 9 9 N 1.36940 * 119.99445 * 16.99975 * 7 2 1 10 10 C 1.47081 * 120.88008 * 206.57802 * 9 7 2 11 11 C 1.53235 * 108.52102 * 231.21315 * 10 9 7 12 12 N 1.46899 * 109.33864 * 306.16630 * 11 10 9 13 13 C 1.46904 * 111.00128 * 187.25493 * 12 11 10 14 14 H 1.09005 * 110.88674 * 297.57660 * 13 12 11 15 15 C 1.55160 * 111.00197 * 173.65252 * 13 12 11 16 16 C 1.54325 * 102.93738 * 206.42566 * 15 13 12 17 17 N 1.47017 * 107.27641 * 22.19112 * 16 15 13 18 18 C 1.34774 * 125.65519 * 181.02048 * 17 16 15 19 19 O 1.21540 * 120.00577 * 180.02562 * 18 17 16 20 20 C 1.47934 * 119.99495 * 0.04914 * 18 17 16 21 21 C 1.39981 * 120.11569 * 179.72336 * 20 18 17 22 22 C 1.38420 * 117.97025 * 179.77999 * 21 20 18 23 23 C 1.39351 * 118.03438 * 0.48497 * 22 21 20 24 24 O 1.35524 * 120.02899 * 179.72905 * 23 22 21 25 25 N 1.32675 * 119.94425 * 359.74141 * 23 22 21 26 26 N 1.28356 * 122.19705 * 0.02562 * 25 23 22 27 27 C 1.47423 * 108.70195 * 1.06118 * 17 16 15 28 28 C 1.46905 * 111.26693 * 63.10788 * 12 11 10 29 29 C 1.47074 * 120.88099 * 26.60929 * 9 7 2 30 30 H 0.97000 * 119.99781 * 0.02562 * 1 2 3 31 31 H 1.08995 * 109.62622 * 111.50063 * 10 9 7 32 32 H 1.09003 * 109.62424 * 350.91888 * 10 9 7 33 33 H 1.09004 * 109.49447 * 186.21224 * 11 10 9 34 34 H 1.08998 * 109.52055 * 66.13924 * 11 10 9 35 35 H 1.08993 * 110.72344 * 324.78525 * 15 13 12 36 36 H 1.08994 * 110.71893 * 88.06644 * 15 13 12 37 37 H 1.09001 * 109.88200 * 262.77633 * 16 15 13 38 38 H 1.09003 * 110.01355 * 141.68544 * 16 15 13 39 39 H 1.07997 * 121.01694 * 0.02562 * 21 20 18 40 40 H 1.07999 * 120.98329 * 180.25361 * 22 21 20 41 41 H 0.96695 * 113.99652 * 270.01875 * 24 23 22 42 42 H 1.08996 * 110.36945 * 217.03317 * 27 17 16 43 43 H 1.09001 * 110.36906 * 94.70914 * 27 17 16 44 44 H 1.08999 * 109.49350 * 56.85742 * 28 12 11 45 45 H 1.09002 * 109.49168 * 176.93084 * 28 12 11 46 46 H 1.09010 * 109.62596 * 248.49763 * 29 9 7 47 47 H 1.09001 * 109.63291 * 9.07099 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0550 -1.2224 0.2741 9 7 1.3705 -2.3623 -0.3457 10 6 1.8312 -3.6609 0.1688 11 6 2.0033 -4.6197 -1.0139 12 7 0.7560 -4.6656 -1.7885 13 6 0.8202 -5.7006 -2.8291 14 1 1.6117 -5.4822 -3.5461 15 6 -0.5489 -5.8583 -3.5418 16 6 -0.5149 -7.3199 -4.0361 17 7 0.4593 -8.0399 -3.2030 18 6 0.7937 -9.3392 -3.3307 19 8 1.6152 -9.8317 -2.5824 20 6 0.1613 -10.1658 -4.3819 21 6 0.5110 -11.5141 -4.5205 22 6 -0.1116 -12.2473 -5.5158 23 6 -1.0404 -11.5962 -6.3253 24 8 -1.6699 -12.2739 -7.3158 25 7 -1.3077 -10.3121 -6.1257 26 7 -0.7358 -9.6301 -5.2009 27 6 1.0092 -7.1054 -2.2042 28 6 0.4411 -3.3537 -2.3696 29 6 0.2050 -2.3428 -1.2424 30 1 -0.4850 0.8401 -0.0004 31 1 1.0922 -4.0631 0.8618 32 1 2.7857 -3.5345 0.6797 33 1 2.2375 -5.6174 -0.6423 34 1 2.8148 -4.2694 -1.6517 35 1 -1.3689 -5.7077 -2.8397 36 1 -0.6279 -5.1688 -4.3822 37 1 -0.2041 -7.3509 -5.0804 38 1 -1.5005 -7.7729 -3.9292 39 1 1.2413 -11.9695 -3.8681 40 1 0.1184 -13.2922 -5.6632 41 1 -1.2075 -12.2492 -8.1647 42 1 2.0673 -7.3073 -2.0378 43 1 0.4559 -7.1817 -1.2682 44 1 1.2742 -3.0204 -2.9884 45 1 -0.4577 -3.4331 -2.9813 46 1 -0.6904 -2.6184 -0.6851 47 1 0.0842 -1.3452 -1.6646 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051977273.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:51 Heat of formation + Delta-G solvation = 15.298847 kcal Electronic energy + Delta-G solvation = -30321.299586 eV Core-core repulsion = 26119.575870 eV Total energy + Delta-G solvation = -4201.723716 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.48488 -41.12161 -39.84695 -38.61557 -38.18712 -35.86023 -34.36278 -33.58367 -32.80565 -31.81849 -31.43122 -29.69461 -27.89177 -26.54168 -25.59593 -24.91681 -24.45631 -23.55503 -21.68070 -21.24510 -20.79252 -20.19876 -19.28763 -18.78779 -18.33158 -17.64864 -17.31089 -16.89769 -16.77858 -16.27504 -15.80820 -15.56534 -15.47324 -15.25102 -15.19428 -14.95791 -14.91438 -14.60640 -14.57115 -14.03791 -13.93243 -13.64934 -13.40098 -13.30265 -13.03253 -12.95725 -12.63249 -12.51670 -12.47303 -12.15177 -12.00826 -11.87120 -11.80682 -11.48848 -11.44021 -11.38431 -11.30922 -10.92537 -10.67570 -10.56300 -9.82371 -9.31116 -8.66555 -7.86150 -5.30395 -0.81312 -0.41075 1.36417 1.47616 1.49581 1.56517 1.58258 2.18544 2.40102 2.51924 2.75237 2.97010 3.25262 3.29025 3.46275 3.61151 3.66315 3.70611 3.73638 3.87956 4.07821 4.21130 4.32815 4.35255 4.39745 4.43972 4.57189 4.60873 4.65847 4.69724 4.71558 4.86014 4.89007 4.90616 4.92527 5.00385 5.03797 5.14856 5.21899 5.26143 5.39701 5.62580 5.72128 6.13064 6.23286 6.26267 6.39167 6.44130 6.73912 7.15252 7.32463 7.85873 8.39707 9.20419 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.031885 B = 0.001952 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.941972 B =14342.056680 C =14962.429945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.051 4.051 3 Si 0.968 3.032 4 H -0.279 1.279 5 H -0.293 1.293 6 H -0.277 1.277 7 C -0.264 4.264 8 H 0.066 0.934 9 N -0.614 5.614 10 C 0.145 3.855 11 C 0.053 3.947 12 N -0.526 5.526 13 C 0.072 3.928 14 H 0.055 0.945 15 C -0.120 4.120 16 C 0.122 3.878 17 N -0.596 5.596 18 C 0.586 3.414 19 O -0.559 6.559 20 C 0.001 3.999 21 C -0.047 4.047 22 C -0.118 4.118 23 C 0.279 3.721 24 O -0.476 6.476 25 N -0.289 5.289 26 N -0.191 5.191 27 C 0.120 3.880 28 C 0.055 3.945 29 C 0.185 3.815 30 H 0.250 0.750 31 H 0.017 0.983 32 H 0.059 0.941 33 H 0.090 0.910 34 H 0.025 0.975 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.182 0.818 40 H 0.205 0.795 41 H 0.433 0.567 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.020 0.980 45 H 0.089 0.911 46 H 0.000 1.000 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.298 -26.735 -16.450 31.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.247 4.247 3 Si 0.796 3.204 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.202 1.202 7 C -0.394 4.394 8 H 0.084 0.916 9 N -0.339 5.339 10 C 0.019 3.981 11 C -0.076 4.076 12 N -0.252 5.252 13 C -0.037 4.037 14 H 0.073 0.927 15 C -0.158 4.158 16 C 0.000 4.000 17 N -0.327 5.327 18 C 0.373 3.627 19 O -0.438 6.438 20 C -0.146 4.146 21 C -0.075 4.075 22 C -0.148 4.148 23 C 0.094 3.906 24 O -0.287 6.287 25 N -0.143 5.143 26 N -0.040 5.040 27 C -0.002 4.002 28 C -0.074 4.074 29 C 0.059 3.941 30 H 0.060 0.940 31 H 0.035 0.965 32 H 0.077 0.923 33 H 0.108 0.892 34 H 0.043 0.957 35 H 0.103 0.897 36 H 0.116 0.884 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.199 0.801 40 H 0.222 0.778 41 H 0.297 0.703 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.038 0.962 45 H 0.107 0.893 46 H 0.018 0.982 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.591 -25.922 -15.832 30.416 hybrid contribution 1.843 0.350 -0.166 1.883 sum 0.252 -25.572 -15.999 30.165 Atomic orbital electron populations 1.70177 1.06546 1.25915 1.55387 1.25779 0.96099 1.01409 1.01376 0.85338 0.77544 0.79269 0.78247 1.20500 1.21949 1.20240 1.19479 0.92840 0.86010 1.41075 0.91634 1.44407 1.34310 1.02059 1.53087 1.21107 0.97438 0.85555 0.93985 1.22490 0.89681 0.99805 0.95613 1.61926 1.34118 1.05261 1.23854 1.22729 0.98205 0.90335 0.92409 0.92696 1.22779 0.96672 0.95402 1.00989 1.22209 0.92448 0.90631 0.94755 1.48327 1.41725 1.08552 1.34099 1.17334 0.81559 0.80652 0.83163 1.90805 1.35186 1.72120 1.45669 1.22670 0.98672 0.95269 0.98021 1.22624 0.97380 0.91439 0.96095 1.22933 0.93337 1.04422 0.94087 1.21247 0.88892 0.88679 0.91734 1.84707 1.51316 1.69810 1.22826 1.73046 1.20192 1.07404 1.13645 1.73463 1.03453 1.28287 0.98842 1.22200 0.99532 0.86837 0.91651 1.22574 0.99743 0.88508 0.96624 1.20645 0.87779 0.96431 0.89247 0.94046 0.96518 0.92278 0.89176 0.95706 0.89666 0.88448 0.89739 0.89997 0.80110 0.77821 0.70299 0.90560 0.90302 0.96204 0.89304 0.98205 0.92404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.51 11.15 21.65 0.24 -55.27 16 2 C -0.05 -2.88 4.94 84.86 0.42 -2.46 16 3 Si 0.97 45.09 29.59 68.60 2.03 47.12 16 4 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 5 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 7 C -0.26 -14.69 9.63 84.03 0.81 -13.88 16 8 H 0.07 3.55 7.88 -2.91 -0.02 3.53 16 9 N -0.61 -31.42 3.04 -698.15 -2.12 -33.54 16 10 C 0.14 6.13 6.69 86.35 0.58 6.71 16 11 C 0.05 1.81 5.48 86.38 0.47 2.29 16 12 N -0.53 -17.20 4.53 -861.88 -3.90 -21.11 16 13 C 0.07 1.86 2.72 46.31 0.13 1.98 16 14 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 15 C -0.12 -2.57 5.34 31.78 0.17 -2.40 16 16 C 0.12 2.48 5.41 86.73 0.47 2.94 16 17 N -0.60 -14.11 3.33 -815.11 -2.71 -16.83 16 18 C 0.59 14.38 7.84 86.81 0.68 15.06 16 19 O -0.56 -16.34 16.64 -3.84 -0.06 -16.40 16 20 C 0.00 0.02 6.80 42.00 0.29 0.30 16 21 C -0.05 -0.59 9.72 22.74 0.22 -0.37 16 22 C -0.12 -0.91 10.14 22.58 0.23 -0.68 16 23 C 0.28 3.40 7.85 84.83 0.67 4.07 16 24 O -0.48 -3.67 13.56 -88.28 -1.20 -4.87 16 25 N -0.29 -5.50 11.54 -170.01 -1.96 -7.46 16 26 N -0.19 -3.92 8.06 -48.50 -0.39 -4.31 16 27 C 0.12 3.02 5.31 86.86 0.46 3.48 16 28 C 0.05 2.01 5.48 86.38 0.47 2.48 16 29 C 0.18 8.98 5.42 86.35 0.47 9.44 16 30 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 31 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 2.41 7.95 -2.39 -0.02 2.39 16 33 H 0.09 2.59 6.79 -2.38 -0.02 2.58 16 34 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.10 1.82 7.94 -2.39 -0.02 1.80 16 37 H 0.08 1.63 7.42 -2.39 -0.02 1.61 16 38 H 0.08 1.66 7.54 -2.39 -0.02 1.64 16 39 H 0.18 1.75 7.71 -2.91 -0.02 1.72 16 40 H 0.20 -0.15 8.06 -2.91 -0.02 -0.17 16 41 H 0.43 -1.33 9.06 -74.06 -0.67 -2.00 16 42 H 0.08 1.96 7.74 -2.39 -0.02 1.94 16 43 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.09 2.82 6.87 -2.39 -0.02 2.81 16 46 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 47 H 0.06 3.15 6.12 -2.39 -0.01 3.13 16 Total: -1.00 -74.79 377.90 -3.21 -78.01 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: 0.33 Total: 5.69 kcal Atomic # 6 Polarization: 22.43 SS G_CDS: 6.53 Total: 28.96 kcal Atomic # 7 Polarization: -127.66 SS G_CDS: -10.84 Total: -138.51 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -1.26 Total: -21.27 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -74.79 -3.21 -78.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051977273.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.307 kcal (2) G-P(sol) polarization free energy of solvation -74.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds