Wall clock time and date at job start Wed Apr 1 2020 05:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99592 * 2 1 4 4 H 1.48497 * 109.46990 * 270.00038 * 3 2 1 5 5 H 1.48503 * 109.47061 * 29.99861 * 3 2 1 6 6 H 1.48502 * 109.47287 * 149.99872 * 3 2 1 7 7 C 1.38807 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99977 * 193.65709 * 7 2 1 9 9 N 1.36938 * 119.99962 * 13.65861 * 7 2 1 10 10 C 1.47084 * 120.88026 * 211.22211 * 9 7 2 11 11 C 1.53237 * 108.51879 * 231.20598 * 10 9 7 12 12 N 1.46892 * 109.34370 * 306.16924 * 11 10 9 13 13 C 1.46901 * 111.00296 * 187.25362 * 12 11 10 14 14 H 1.08993 * 110.88934 * 297.57491 * 13 12 11 15 15 C 1.55159 * 111.00533 * 173.65252 * 13 12 11 16 16 C 1.54325 * 102.93990 * 206.42732 * 15 13 12 17 17 N 1.47017 * 107.27574 * 22.19250 * 16 15 13 18 18 C 1.34773 * 125.65254 * 181.02167 * 17 16 15 19 19 O 1.21583 * 120.00005 * 184.86762 * 18 17 16 20 20 C 1.47527 * 119.99635 * 4.87510 * 18 17 16 21 21 C 1.39803 * 120.98068 * 315.73969 * 20 18 17 22 22 N 1.32186 * 118.98325 * 179.97438 * 21 20 18 23 23 C 1.31943 * 121.14002 * 359.97438 * 22 21 20 24 24 N 1.31719 * 122.19297 * 0.02562 * 23 22 21 25 25 C 1.32774 * 120.87831 * 359.72406 * 24 23 22 26 26 O 1.35279 * 120.62164 * 180.26580 * 25 24 23 27 27 C 1.47431 * 108.70176 * 1.05819 * 17 16 15 28 28 C 1.46904 * 111.26718 * 63.10578 * 12 11 10 29 29 C 1.47076 * 120.88215 * 31.24461 * 9 7 2 30 30 H 0.96998 * 120.00863 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.62366 * 111.49721 * 10 9 7 32 32 H 1.08999 * 109.62699 * 350.92002 * 10 9 7 33 33 H 1.09000 * 109.48948 * 186.21120 * 11 10 9 34 34 H 1.09000 * 109.51513 * 66.14602 * 11 10 9 35 35 H 1.09003 * 110.71826 * 324.78358 * 15 13 12 36 36 H 1.08995 * 110.72223 * 88.06156 * 15 13 12 37 37 H 1.09000 * 109.88038 * 262.77158 * 16 15 13 38 38 H 1.09006 * 110.00894 * 141.68260 * 16 15 13 39 39 H 1.08001 * 120.50804 * 0.02562 * 21 20 18 40 40 H 1.07999 * 118.90363 * 179.97438 * 23 22 21 41 41 H 0.96698 * 113.99812 * 270.26637 * 26 25 24 42 42 H 1.08998 * 110.36704 * 217.03448 * 27 17 16 43 43 H 1.09003 * 110.36575 * 94.70911 * 27 17 16 44 44 H 1.08997 * 109.49315 * 56.85747 * 28 12 11 45 45 H 1.09005 * 109.49025 * 176.93674 * 28 12 11 46 46 H 1.08994 * 109.63222 * 248.50182 * 29 9 7 47 47 H 1.08999 * 109.63115 * 9.08707 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4474 2.6527 0.7000 6 1 3.5477 1.4404 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0674 -1.2151 0.2214 9 7 1.3547 -2.3714 -0.2790 10 6 1.7812 -3.6402 0.3305 11 6 1.9559 -4.6799 -0.7816 12 7 0.7220 -4.7557 -1.5750 13 6 0.7849 -5.8597 -2.5421 14 1 1.5930 -5.7045 -3.2569 15 6 -0.5741 -6.0407 -3.2686 16 6 -0.5592 -7.5328 -3.6626 17 7 0.3860 -8.2121 -2.7645 18 6 0.6976 -9.5229 -2.7980 19 8 1.4276 -9.9961 -1.9487 20 6 0.1530 -10.3834 -3.8654 21 6 -1.1904 -10.2987 -4.2429 22 7 -1.6365 -11.0883 -5.2046 23 6 -0.8372 -11.9474 -5.8079 24 7 0.4353 -12.0653 -5.4888 25 6 0.9722 -11.3099 -4.5381 26 8 2.2811 -11.4315 -4.2183 27 6 0.9358 -7.2221 -1.8205 28 6 0.4426 -3.4807 -2.2489 29 6 0.2058 -2.3919 -1.1970 30 1 -0.4851 0.8400 0.0004 31 1 1.0224 -3.9814 1.0348 32 1 2.7287 -3.4967 0.8498 33 1 2.1644 -5.6540 -0.3393 34 1 2.7852 -4.3880 -1.4259 35 1 -1.4034 -5.8284 -2.5938 36 1 -0.6249 -5.4083 -4.1549 37 1 -0.2306 -7.6399 -4.6964 38 1 -1.5552 -7.9597 -3.5443 39 1 -1.8534 -9.5983 -3.7568 40 1 -1.2399 -12.5755 -6.5887 41 1 2.4578 -12.0828 -3.5258 42 1 1.9867 -7.4313 -1.6208 43 1 0.3645 -7.2250 -0.8922 44 1 1.2929 -3.2050 -2.8727 45 1 -0.4465 -3.5852 -2.8708 46 1 -0.7044 -2.6130 -0.6396 47 1 0.1118 -1.4231 -1.6876 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052041299.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:42 Heat of formation + Delta-G solvation = 3.337744 kcal Electronic energy + Delta-G solvation = -30647.497019 eV Core-core repulsion = 26445.254631 eV Total energy + Delta-G solvation = -4202.242388 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.54134 -41.06626 -39.78128 -38.84683 -38.06543 -35.87832 -34.61334 -33.55825 -32.88532 -31.85356 -31.42505 -29.74344 -27.86909 -26.53222 -25.37347 -24.98250 -24.46445 -23.55217 -21.68470 -21.05746 -20.81267 -20.30639 -19.29774 -18.78169 -18.57926 -17.63926 -17.49562 -16.97735 -16.79392 -16.28189 -15.84544 -15.69754 -15.50606 -15.26104 -15.18654 -15.13424 -14.98313 -14.85026 -14.51534 -14.08756 -13.97133 -13.59851 -13.44546 -13.30346 -12.96768 -12.71989 -12.58351 -12.55920 -12.44096 -12.18418 -12.01925 -11.90832 -11.84619 -11.82045 -11.44794 -11.37437 -11.16564 -10.80590 -10.59311 -10.53980 -9.83107 -9.32978 -8.61853 -7.87795 -5.37450 -0.70983 -0.27642 1.35702 1.46674 1.47251 1.56451 1.68719 2.17392 2.49767 2.50336 2.89630 2.99523 3.13508 3.15669 3.28187 3.52521 3.59630 3.70093 3.71797 4.04973 4.11697 4.15401 4.23835 4.32789 4.34312 4.37235 4.54697 4.58561 4.62650 4.69445 4.72435 4.86490 4.89605 4.95604 5.00912 5.04511 5.10005 5.20483 5.22692 5.36681 5.58921 5.62562 5.70459 6.11613 6.22081 6.27114 6.30159 6.40044 6.79019 6.82687 7.15158 7.83698 8.39556 9.18521 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.029360 B = 0.002064 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.454909 B =13561.205684 C =14064.495667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.046 4.046 3 Si 0.968 3.032 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.271 1.271 7 C -0.266 4.266 8 H 0.062 0.938 9 N -0.615 5.615 10 C 0.145 3.855 11 C 0.054 3.946 12 N -0.524 5.524 13 C 0.070 3.930 14 H 0.050 0.950 15 C -0.117 4.117 16 C 0.096 3.904 17 N -0.607 5.607 18 C 0.590 3.410 19 O -0.563 6.563 20 C -0.262 4.262 21 C 0.205 3.795 22 N -0.530 5.530 23 C 0.341 3.659 24 N -0.556 5.556 25 C 0.405 3.595 26 O -0.481 6.481 27 C 0.123 3.877 28 C 0.054 3.946 29 C 0.188 3.812 30 H 0.251 0.749 31 H 0.018 0.982 32 H 0.056 0.944 33 H 0.088 0.912 34 H 0.022 0.978 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.204 0.796 40 H 0.243 0.757 41 H 0.431 0.569 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.018 0.982 45 H 0.093 0.907 46 H 0.003 0.997 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.465 -23.521 -13.038 27.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.242 4.242 3 Si 0.796 3.204 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.196 1.196 7 C -0.397 4.397 8 H 0.079 0.921 9 N -0.339 5.339 10 C 0.020 3.980 11 C -0.076 4.076 12 N -0.249 5.249 13 C -0.040 4.040 14 H 0.068 0.932 15 C -0.155 4.155 16 C -0.026 4.026 17 N -0.340 5.340 18 C 0.378 3.622 19 O -0.442 6.442 20 C -0.271 4.271 21 C 0.039 3.961 22 N -0.245 5.245 23 C 0.056 3.944 24 N -0.281 5.281 25 C 0.217 3.783 26 O -0.293 6.293 27 C 0.000 4.000 28 C -0.075 4.075 29 C 0.062 3.938 30 H 0.060 0.940 31 H 0.036 0.964 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.040 0.960 35 H 0.112 0.888 36 H 0.117 0.883 37 H 0.099 0.901 38 H 0.121 0.879 39 H 0.220 0.780 40 H 0.259 0.741 41 H 0.296 0.704 42 H 0.084 0.916 43 H 0.098 0.902 44 H 0.036 0.964 45 H 0.111 0.889 46 H 0.021 0.979 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.732 -23.960 -13.331 27.824 hybrid contribution 1.640 1.554 0.828 2.406 sum -3.092 -22.406 -12.503 25.844 Atomic orbital electron populations 1.70147 1.06534 1.25926 1.55171 1.25887 0.96159 1.01459 1.00706 0.85272 0.78028 0.79542 0.77595 1.21053 1.21998 1.19564 1.19448 0.91673 0.85520 1.43023 0.92053 1.44360 1.35632 1.03513 1.50385 1.21100 0.97533 0.85821 0.93576 1.22474 0.89880 0.99489 0.95728 1.61931 1.35249 1.03701 1.23998 1.22748 0.98508 0.89827 0.92890 0.93235 1.22721 0.96722 0.94549 1.01471 1.22498 0.93644 0.92473 0.93946 1.48325 1.44125 1.06672 1.34841 1.17422 0.80169 0.80674 0.83966 1.90787 1.39036 1.73865 1.40527 1.21747 0.97953 1.04818 1.02629 1.24052 0.90922 0.92578 0.88531 1.68603 1.39273 1.07211 1.09428 1.25878 0.83105 0.90903 0.94543 1.68228 1.16217 1.26760 1.16934 1.19553 0.84216 0.87318 0.87257 1.84537 1.18020 1.65050 1.61685 1.22122 0.99178 0.85962 0.92716 1.22588 0.99831 0.89070 0.95989 1.20588 0.88212 0.95484 0.89533 0.93980 0.96442 0.92541 0.89368 0.95980 0.88825 0.88314 0.90060 0.87921 0.78004 0.74108 0.70419 0.91575 0.90202 0.96420 0.88914 0.97889 0.93042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.61 11.30 21.65 0.24 -54.37 16 2 C -0.05 -2.57 4.98 84.86 0.42 -2.14 16 3 Si 0.97 44.62 29.58 68.60 2.03 46.65 16 4 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 5 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 7 C -0.27 -14.69 9.60 84.03 0.81 -13.89 16 8 H 0.06 3.33 7.87 -2.91 -0.02 3.31 16 9 N -0.61 -30.96 3.02 -698.14 -2.11 -33.07 16 10 C 0.15 6.08 6.69 86.35 0.58 6.66 16 11 C 0.05 1.79 5.48 86.38 0.47 2.26 16 12 N -0.52 -16.16 4.53 -861.91 -3.90 -20.06 16 13 C 0.07 1.62 2.72 46.31 0.13 1.74 16 14 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 15 C -0.12 -1.91 5.34 31.78 0.17 -1.74 16 16 C 0.10 1.25 5.58 86.73 0.48 1.73 16 17 N -0.61 -11.98 3.33 -815.55 -2.71 -14.69 16 18 C 0.59 13.29 7.27 86.69 0.63 13.92 16 19 O -0.56 -16.54 16.75 5.78 0.10 -16.44 16 20 C -0.26 -4.64 5.50 -19.83 -0.11 -4.75 16 21 C 0.21 2.60 9.84 85.02 0.84 3.43 16 22 N -0.53 -6.71 10.42 -199.12 -2.07 -8.79 16 23 C 0.34 3.91 12.27 180.86 2.22 6.13 16 24 N -0.56 -9.28 10.45 -312.04 -3.26 -12.54 16 25 C 0.40 7.65 7.83 85.17 0.67 8.32 16 26 O -0.48 -9.31 12.63 -75.89 -0.96 -10.27 16 27 C 0.12 2.84 5.30 86.85 0.46 3.30 16 28 C 0.05 1.90 5.48 86.38 0.47 2.37 16 29 C 0.19 8.83 5.37 86.35 0.46 9.29 16 30 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 31 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.06 2.31 7.95 -2.39 -0.02 2.29 16 33 H 0.09 2.52 6.79 -2.39 -0.02 2.50 16 34 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.10 1.37 7.94 -2.39 -0.02 1.35 16 37 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.10 0.77 5.88 -2.38 -0.01 0.75 16 39 H 0.20 1.46 5.70 -2.91 -0.02 1.44 16 40 H 0.24 0.72 8.06 -2.91 -0.02 0.70 16 41 H 0.43 5.08 9.06 -74.06 -0.67 4.41 16 42 H 0.07 1.69 7.79 -2.39 -0.02 1.67 16 43 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.09 2.69 6.87 -2.38 -0.02 2.67 16 46 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 47 H 0.05 2.72 6.38 -2.39 -0.02 2.71 16 Total: -1.00 -74.49 376.26 -3.60 -78.10 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 0.34 Total: 8.85 kcal Atomic # 6 Polarization: 27.94 SS G_CDS: 8.70 Total: 36.64 kcal Atomic # 7 Polarization: -129.71 SS G_CDS: -13.81 Total: -143.52 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.86 Total: -26.71 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -74.49 -3.60 -78.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052041299.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.434 kcal (2) G-P(sol) polarization free energy of solvation -74.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds