Wall clock time and date at job start Wed Apr 1 2020 05:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99907 * 2 1 4 4 H 1.48492 * 109.47112 * 270.00229 * 3 2 1 5 5 H 1.48501 * 109.46904 * 30.00610 * 3 2 1 6 6 H 1.48504 * 109.47066 * 149.99761 * 3 2 1 7 7 C 1.38818 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99489 * 191.50359 * 7 2 1 9 9 N 1.36934 * 119.99938 * 11.49683 * 7 2 1 10 10 C 1.47075 * 120.87776 * 212.56771 * 9 7 2 11 11 C 1.53246 * 108.51949 * 231.16425 * 10 9 7 12 12 N 1.46905 * 109.33877 * 306.17115 * 11 10 9 13 13 C 1.46898 * 110.99892 * 187.25327 * 12 11 10 14 14 H 1.09003 * 110.88716 * 307.03780 * 13 12 11 15 15 C 1.55155 * 111.00533 * 70.96012 * 13 12 11 16 16 C 1.54332 * 103.02168 * 153.38314 * 15 13 12 17 17 N 1.47021 * 107.26445 * 338.14002 * 16 15 13 18 18 C 1.34773 * 125.64915 * 178.85153 * 17 16 15 19 19 O 1.21587 * 120.00474 * 184.58382 * 18 17 16 20 20 C 1.47533 * 120.00043 * 4.58537 * 18 17 16 21 21 C 1.39813 * 120.98105 * 47.92174 * 20 18 17 22 22 N 1.32187 * 118.98107 * 179.74998 * 21 20 18 23 23 C 1.31936 * 121.13908 * 0.25095 * 22 21 20 24 24 N 1.31727 * 122.19649 * 359.97438 * 23 22 21 25 25 C 1.32765 * 120.87348 * 359.97438 * 24 23 22 26 26 O 1.35280 * 120.61438 * 179.97438 * 25 24 23 27 27 C 1.47429 * 108.70257 * 358.58700 * 17 16 15 28 28 C 1.46896 * 111.26779 * 63.10610 * 12 11 10 29 29 C 1.47081 * 120.87959 * 32.54993 * 9 7 2 30 30 H 0.97005 * 120.00617 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.62812 * 111.46014 * 10 9 7 32 32 H 1.08993 * 109.79394 * 350.97189 * 10 9 7 33 33 H 1.08997 * 109.48965 * 186.21623 * 11 10 9 34 34 H 1.08997 * 109.49035 * 66.13209 * 11 10 9 35 35 H 1.09002 * 110.71997 * 271.93990 * 15 13 12 36 36 H 1.09001 * 110.72082 * 35.20940 * 15 13 12 37 37 H 1.09002 * 109.99219 * 218.66764 * 16 15 13 38 38 H 1.08993 * 109.78218 * 97.49736 * 16 15 13 39 39 H 1.08002 * 120.50932 * 0.02562 * 21 20 18 40 40 H 1.07997 * 118.90164 * 180.02562 * 23 22 21 41 41 H 0.96702 * 113.99738 * 90.00078 * 26 25 24 42 42 H 1.09001 * 110.36176 * 143.19583 * 27 17 16 43 43 H 1.08998 * 110.36767 * 265.40710 * 27 17 16 44 44 H 1.08998 * 109.49491 * 56.85222 * 28 12 11 45 45 H 1.08996 * 109.49264 * 176.93370 * 28 12 11 46 46 H 1.09004 * 109.62270 * 248.54561 * 29 9 7 47 47 H 1.08992 * 109.62955 * 8.92604 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0740 -1.2115 0.1860 9 7 1.3462 -2.3761 -0.2374 10 6 1.7749 -3.6284 0.4036 11 6 1.9301 -4.7013 -0.6796 12 7 0.6853 -4.7944 -1.4541 13 6 0.7304 -5.9266 -2.3889 14 1 1.6250 -5.8824 -3.0100 15 6 0.6450 -7.2776 -1.6307 16 6 0.0267 -8.2263 -2.6793 17 7 -0.6738 -7.3902 -3.6650 18 6 -1.3269 -7.8406 -4.7545 19 8 -1.8013 -7.0514 -5.5485 20 6 -1.4662 -9.2914 -4.9837 21 6 -1.8917 -10.1440 -3.9607 22 7 -2.0075 -11.4368 -4.2111 23 6 -1.7244 -11.9292 -5.4019 24 7 -1.3158 -11.1686 -6.3968 25 6 -1.1712 -9.8585 -6.2379 26 8 -0.7507 -9.0824 -7.2631 27 6 -0.5489 -5.9779 -3.2609 28 6 0.4029 -3.5384 -2.1616 29 6 0.1851 -2.4178 -1.1393 30 1 -0.4851 0.8400 0.0004 31 1 1.0240 -3.9450 1.1275 32 1 2.7290 -3.4769 0.9083 33 1 2.1399 -5.6630 -0.2114 34 1 2.7521 -4.4322 -1.3429 35 1 1.6378 -7.6183 -1.3368 36 1 -0.0073 -7.1915 -0.7616 37 1 -0.6796 -8.9033 -2.1987 38 1 0.8147 -8.7970 -3.1705 39 1 -2.1266 -9.7519 -2.9822 40 1 -1.8322 -12.9910 -5.5668 41 1 -1.4665 -8.7339 -7.8119 42 1 -0.4360 -5.3409 -4.1382 43 1 -1.4186 -5.6713 -2.6798 44 1 1.2461 -3.2854 -2.8044 45 1 -0.4948 -3.6567 -2.7684 46 1 -0.7186 -2.6179 -0.5636 47 1 0.0870 -1.4623 -1.6544 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052041300.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:46 Heat of formation + Delta-G solvation = 28.376645 kcal Electronic energy + Delta-G solvation = -30671.983894 eV Core-core repulsion = 26470.827274 eV Total energy + Delta-G solvation = -4201.156620 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.85880 -40.15199 -38.60177 -38.06755 -36.84793 -34.34854 -33.87127 -32.45859 -31.46304 -30.80800 -29.78182 -28.67483 -26.41411 -25.53237 -24.68030 -23.75807 -22.90011 -22.25127 -20.59425 -20.12750 -19.66463 -19.18768 -18.60870 -17.81022 -17.08365 -16.96586 -16.27629 -15.97912 -15.58158 -14.95017 -14.71588 -14.53849 -14.46193 -14.37831 -14.05396 -13.89191 -13.49458 -13.43134 -13.26661 -13.02343 -12.74994 -12.69726 -12.43935 -11.87250 -11.75155 -11.47094 -11.26940 -11.22060 -11.06510 -10.94956 -10.79335 -10.47290 -10.37389 -10.29657 -10.08769 -10.07260 -9.91209 -9.80613 -9.61697 -8.95133 -8.53225 -7.96099 -6.60945 -5.80452 -3.28871 -0.05815 0.34648 2.20636 2.52222 2.79407 3.12707 3.35935 3.42712 3.43802 3.50737 3.74525 3.89286 4.13692 4.32175 4.46153 4.46788 4.48742 4.70685 4.81613 4.89057 5.10232 5.20223 5.29329 5.38437 5.41593 5.55866 5.62505 5.72168 5.76817 5.82592 5.85255 5.89017 6.07509 6.11322 6.19240 6.21612 6.29306 6.49270 6.65347 6.85501 6.89732 7.09968 7.18954 7.39251 7.49545 7.59039 7.65773 7.70952 7.78850 8.45191 9.20108 9.81034 10.42448 11.28161 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026724 B = 0.002112 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.510652 B =13257.056331 C =13784.714467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.006 3.994 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.256 4.256 8 H 0.063 0.937 9 N -0.594 5.594 10 C 0.149 3.851 11 C 0.045 3.955 12 N -0.519 5.519 13 C 0.069 3.931 14 H 0.052 0.948 15 C -0.121 4.121 16 C 0.097 3.903 17 N -0.608 5.608 18 C 0.590 3.410 19 O -0.524 6.524 20 C -0.248 4.248 21 C 0.197 3.803 22 N -0.525 5.525 23 C 0.335 3.665 24 N -0.540 5.540 25 C 0.412 3.588 26 O -0.467 6.467 27 C 0.115 3.885 28 C 0.031 3.969 29 C 0.181 3.819 30 H 0.255 0.745 31 H 0.026 0.974 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.028 0.972 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.180 0.820 40 H 0.208 0.792 41 H 0.419 0.581 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.026 0.974 45 H 0.063 0.937 46 H 0.028 0.972 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.052 -23.609 -8.568 25.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.193 4.193 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.386 4.386 8 H 0.081 0.919 9 N -0.318 5.318 10 C 0.023 3.977 11 C -0.084 4.084 12 N -0.245 5.245 13 C -0.041 4.041 14 H 0.070 0.930 15 C -0.159 4.159 16 C -0.026 4.026 17 N -0.342 5.342 18 C 0.377 3.623 19 O -0.400 6.400 20 C -0.258 4.258 21 C 0.031 3.969 22 N -0.240 5.240 23 C 0.049 3.951 24 N -0.264 5.264 25 C 0.223 3.777 26 O -0.276 6.276 27 C -0.007 4.007 28 C -0.098 4.098 29 C 0.055 3.945 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.046 0.954 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.197 0.803 40 H 0.224 0.776 41 H 0.282 0.718 42 H 0.099 0.901 43 H 0.105 0.895 44 H 0.045 0.955 45 H 0.082 0.918 46 H 0.046 0.954 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.362 -24.119 -8.712 25.863 hybrid contribution 0.837 1.916 -0.709 2.207 sum -2.525 -22.203 -9.422 24.251 Atomic orbital electron populations 1.69977 1.05244 1.25568 1.53805 1.25207 0.95397 0.98446 1.00225 0.86277 0.79076 0.83607 0.77683 1.21423 1.21648 1.20415 1.19138 0.90888 0.83980 1.44582 0.91942 1.44039 1.34323 1.03692 1.49725 1.20973 0.97993 0.86407 0.92356 1.22644 0.89283 0.99613 0.96870 1.62052 1.35315 1.02948 1.24162 1.22744 0.95986 0.92264 0.93122 0.92994 1.22688 1.01894 0.93457 0.97868 1.22240 0.96057 0.94316 0.89989 1.48303 1.52597 1.09221 1.24072 1.17135 0.78448 0.86440 0.80323 1.90824 1.48346 1.56600 1.44267 1.21942 1.09527 0.96711 0.97578 1.23574 0.87442 0.87728 0.98153 1.68474 1.18130 1.14216 1.23163 1.25095 0.86896 1.00680 0.82467 1.68136 1.16511 1.05511 1.36270 1.19376 0.84990 0.86710 0.86595 1.84587 1.36382 1.64530 1.42072 1.22364 0.98797 0.80763 0.98776 1.22986 0.98904 0.90452 0.97476 1.20803 0.89362 0.94716 0.89600 0.93540 0.95646 0.92597 0.91896 0.95370 0.90004 0.88866 0.91056 0.91470 0.80350 0.77608 0.71837 0.90088 0.89543 0.95526 0.91836 0.95370 0.89837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.94 11.26 55.49 0.62 -25.32 16 2 C 0.01 0.18 5.03 -17.43 -0.09 0.09 16 3 Si 0.90 21.52 29.57 -169.99 -5.03 16.49 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.26 -6.94 9.60 -15.06 -0.14 -7.09 16 8 H 0.06 1.67 7.86 -52.49 -0.41 1.26 16 9 N -0.59 -14.69 3.01 -172.02 -0.52 -15.20 16 10 C 0.15 3.04 6.69 -3.60 -0.02 3.02 16 11 C 0.05 0.75 5.53 -3.69 -0.02 0.73 16 12 N -0.52 -8.34 4.53 -223.78 -1.01 -9.36 16 13 C 0.07 0.87 2.73 -65.57 -0.18 0.69 16 14 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 15 C -0.12 -1.14 5.76 -24.89 -0.14 -1.29 16 16 C 0.10 0.81 5.99 -3.06 -0.02 0.79 16 17 N -0.61 -6.77 3.33 -171.75 -0.57 -7.34 16 18 C 0.59 7.18 7.17 -12.47 -0.09 7.09 16 19 O -0.52 -7.99 16.84 -1.19 -0.02 -8.01 16 20 C -0.25 -2.44 5.35 -104.56 -0.56 -3.00 16 21 C 0.20 1.55 9.75 -16.81 -0.16 1.39 16 22 N -0.52 -4.16 10.42 -14.29 -0.15 -4.31 16 23 C 0.34 2.40 12.27 -92.09 -1.13 1.27 16 24 N -0.54 -5.01 10.45 -14.32 -0.15 -5.16 16 25 C 0.41 4.16 7.83 -16.19 -0.13 4.03 16 26 O -0.47 -4.63 12.74 -24.01 -0.31 -4.94 16 27 C 0.11 1.46 4.96 -2.53 -0.01 1.45 16 28 C 0.03 0.57 5.39 -3.70 -0.02 0.55 16 29 C 0.18 4.25 5.35 -3.60 -0.02 4.23 16 30 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 1.10 7.96 -51.93 -0.41 0.69 16 33 H 0.06 0.86 7.27 -51.93 -0.38 0.48 16 34 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.68 8.00 -51.93 -0.42 0.27 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.44 5.99 -51.93 -0.31 0.13 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.18 1.02 6.53 -52.49 -0.34 0.68 16 40 H 0.21 0.68 8.06 -52.49 -0.42 0.26 16 41 H 0.42 2.51 9.06 45.56 0.41 2.92 16 42 H 0.08 1.14 7.75 -51.93 -0.40 0.74 16 43 H 0.09 1.15 8.01 -51.93 -0.42 0.74 16 44 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 1.07 6.45 -51.93 -0.33 0.74 16 46 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.08 2.19 6.40 -51.93 -0.33 1.85 16 LS Contribution 377.47 15.07 5.69 5.69 Total: -1.00 -33.63 377.47 -10.04 -43.67 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -5.86 Total: -0.16 kcal Atomic # 6 Polarization: 16.68 SS G_CDS: -2.74 Total: 13.94 kcal Atomic # 7 Polarization: -64.91 SS G_CDS: -1.78 Total: -66.69 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -0.33 Total: -12.95 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.63 -10.04 -43.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052041300.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.046 kcal (2) G-P(sol) polarization free energy of solvation -33.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds