Wall clock time and date at job start Wed Apr 1 2020 05:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99907 * 2 1 4 4 H 1.48492 * 109.47112 * 270.00229 * 3 2 1 5 5 H 1.48501 * 109.46904 * 30.00610 * 3 2 1 6 6 H 1.48504 * 109.47066 * 149.99761 * 3 2 1 7 7 C 1.38818 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99489 * 191.50359 * 7 2 1 9 9 N 1.36934 * 119.99938 * 11.49683 * 7 2 1 10 10 C 1.47075 * 120.87776 * 212.56771 * 9 7 2 11 11 C 1.53246 * 108.51949 * 231.16425 * 10 9 7 12 12 N 1.46905 * 109.33877 * 306.17115 * 11 10 9 13 13 C 1.46898 * 110.99892 * 187.25327 * 12 11 10 14 14 H 1.09003 * 110.88716 * 307.03780 * 13 12 11 15 15 C 1.55155 * 111.00533 * 70.96012 * 13 12 11 16 16 C 1.54332 * 103.02168 * 153.38314 * 15 13 12 17 17 N 1.47021 * 107.26445 * 338.14002 * 16 15 13 18 18 C 1.34773 * 125.64915 * 178.85153 * 17 16 15 19 19 O 1.21587 * 120.00474 * 184.58382 * 18 17 16 20 20 C 1.47533 * 120.00043 * 4.58537 * 18 17 16 21 21 C 1.39813 * 120.98105 * 47.92174 * 20 18 17 22 22 N 1.32187 * 118.98107 * 179.74998 * 21 20 18 23 23 C 1.31936 * 121.13908 * 0.25095 * 22 21 20 24 24 N 1.31727 * 122.19649 * 359.97438 * 23 22 21 25 25 C 1.32765 * 120.87348 * 359.97438 * 24 23 22 26 26 O 1.35280 * 120.61438 * 179.97438 * 25 24 23 27 27 C 1.47429 * 108.70257 * 358.58700 * 17 16 15 28 28 C 1.46896 * 111.26779 * 63.10610 * 12 11 10 29 29 C 1.47081 * 120.87959 * 32.54993 * 9 7 2 30 30 H 0.97005 * 120.00617 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.62812 * 111.46014 * 10 9 7 32 32 H 1.08993 * 109.79394 * 350.97189 * 10 9 7 33 33 H 1.08997 * 109.48965 * 186.21623 * 11 10 9 34 34 H 1.08997 * 109.49035 * 66.13209 * 11 10 9 35 35 H 1.09002 * 110.71997 * 271.93990 * 15 13 12 36 36 H 1.09001 * 110.72082 * 35.20940 * 15 13 12 37 37 H 1.09002 * 109.99219 * 218.66764 * 16 15 13 38 38 H 1.08993 * 109.78218 * 97.49736 * 16 15 13 39 39 H 1.08002 * 120.50932 * 0.02562 * 21 20 18 40 40 H 1.07997 * 118.90164 * 180.02562 * 23 22 21 41 41 H 0.96702 * 113.99738 * 90.00078 * 26 25 24 42 42 H 1.09001 * 110.36176 * 143.19583 * 27 17 16 43 43 H 1.08998 * 110.36767 * 265.40710 * 27 17 16 44 44 H 1.08998 * 109.49491 * 56.85222 * 28 12 11 45 45 H 1.08996 * 109.49264 * 176.93370 * 28 12 11 46 46 H 1.09004 * 109.62270 * 248.54561 * 29 9 7 47 47 H 1.08992 * 109.62955 * 8.92604 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0740 -1.2115 0.1860 9 7 1.3462 -2.3761 -0.2374 10 6 1.7749 -3.6284 0.4036 11 6 1.9301 -4.7013 -0.6796 12 7 0.6853 -4.7944 -1.4541 13 6 0.7304 -5.9266 -2.3889 14 1 1.6250 -5.8824 -3.0100 15 6 0.6450 -7.2776 -1.6307 16 6 0.0267 -8.2263 -2.6793 17 7 -0.6738 -7.3902 -3.6650 18 6 -1.3269 -7.8406 -4.7545 19 8 -1.8013 -7.0514 -5.5485 20 6 -1.4662 -9.2914 -4.9837 21 6 -1.8917 -10.1440 -3.9607 22 7 -2.0075 -11.4368 -4.2111 23 6 -1.7244 -11.9292 -5.4019 24 7 -1.3158 -11.1686 -6.3968 25 6 -1.1712 -9.8585 -6.2379 26 8 -0.7507 -9.0824 -7.2631 27 6 -0.5489 -5.9779 -3.2609 28 6 0.4029 -3.5384 -2.1616 29 6 0.1851 -2.4178 -1.1393 30 1 -0.4851 0.8400 0.0004 31 1 1.0240 -3.9450 1.1275 32 1 2.7290 -3.4769 0.9083 33 1 2.1399 -5.6630 -0.2114 34 1 2.7521 -4.4322 -1.3429 35 1 1.6378 -7.6183 -1.3368 36 1 -0.0073 -7.1915 -0.7616 37 1 -0.6796 -8.9033 -2.1987 38 1 0.8147 -8.7970 -3.1705 39 1 -2.1266 -9.7519 -2.9822 40 1 -1.8322 -12.9910 -5.5668 41 1 -1.4665 -8.7339 -7.8119 42 1 -0.4360 -5.3409 -4.1382 43 1 -1.4186 -5.6713 -2.6798 44 1 1.2461 -3.2854 -2.8044 45 1 -0.4948 -3.6567 -2.7684 46 1 -0.7186 -2.6179 -0.5636 47 1 0.0870 -1.4623 -1.6544 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052041300.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:45 Heat of formation + Delta-G solvation = 1.421403 kcal Electronic energy + Delta-G solvation = -30673.152761 eV Core-core repulsion = 26470.827274 eV Total energy + Delta-G solvation = -4202.325487 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.53439 -41.07573 -39.78119 -38.84326 -38.07389 -35.86936 -34.60852 -33.54842 -32.86005 -32.04539 -31.22324 -29.79367 -27.86171 -26.49719 -25.38232 -24.97412 -24.49046 -23.54437 -21.68365 -21.03228 -20.79422 -20.33270 -19.28613 -18.77867 -18.65119 -17.64278 -17.52037 -16.91533 -16.74633 -16.27325 -15.86265 -15.80759 -15.46208 -15.30496 -15.15918 -15.06168 -14.99014 -14.82347 -14.52899 -14.09984 -13.95590 -13.61917 -13.45183 -13.18520 -13.07758 -12.71318 -12.60214 -12.57903 -12.44565 -12.22924 -12.01209 -11.92871 -11.85903 -11.76840 -11.44679 -11.35918 -11.19370 -10.80456 -10.60030 -10.54394 -9.83864 -9.32541 -8.60195 -7.87855 -5.39619 -0.70150 -0.27924 1.34688 1.45863 1.46722 1.55743 1.66426 2.16654 2.49274 2.49992 2.89506 3.00634 3.13789 3.15956 3.28761 3.52863 3.60932 3.70324 3.72602 4.04770 4.11779 4.16140 4.25820 4.34213 4.35617 4.37736 4.53344 4.57769 4.62919 4.71053 4.73255 4.83169 4.89933 4.94015 5.03790 5.06210 5.10084 5.22578 5.25597 5.37522 5.58696 5.62320 5.68357 6.11013 6.21856 6.27123 6.28840 6.40405 6.78813 6.82083 7.14693 7.83598 8.39890 9.18327 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026724 B = 0.002112 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.510652 B =13257.056331 C =13784.714467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.048 4.048 3 Si 0.968 3.032 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.267 1.267 7 C -0.265 4.265 8 H 0.065 0.935 9 N -0.615 5.615 10 C 0.144 3.856 11 C 0.058 3.942 12 N -0.522 5.522 13 C 0.070 3.930 14 H 0.050 0.950 15 C -0.111 4.111 16 C 0.097 3.903 17 N -0.606 5.606 18 C 0.590 3.410 19 O -0.566 6.566 20 C -0.261 4.261 21 C 0.210 3.790 22 N -0.529 5.529 23 C 0.342 3.658 24 N -0.556 5.556 25 C 0.404 3.596 26 O -0.483 6.483 27 C 0.118 3.882 28 C 0.049 3.951 29 C 0.190 3.810 30 H 0.250 0.750 31 H 0.020 0.980 32 H 0.060 0.940 33 H 0.104 0.896 34 H 0.021 0.979 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.079 0.921 39 H 0.202 0.798 40 H 0.244 0.756 41 H 0.431 0.569 42 H 0.060 0.940 43 H 0.079 0.921 44 H 0.016 0.984 45 H 0.077 0.923 46 H 0.002 0.998 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.126 -26.727 -8.066 27.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.244 4.244 3 Si 0.796 3.204 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.192 1.192 7 C -0.395 4.395 8 H 0.082 0.918 9 N -0.339 5.339 10 C 0.019 3.981 11 C -0.071 4.071 12 N -0.247 5.247 13 C -0.039 4.039 14 H 0.068 0.932 15 C -0.149 4.149 16 C -0.025 4.025 17 N -0.339 5.339 18 C 0.377 3.623 19 O -0.445 6.445 20 C -0.270 4.270 21 C 0.043 3.957 22 N -0.244 5.244 23 C 0.056 3.944 24 N -0.281 5.281 25 C 0.216 3.784 26 O -0.294 6.294 27 C -0.005 4.005 28 C -0.080 4.080 29 C 0.064 3.936 30 H 0.059 0.941 31 H 0.038 0.962 32 H 0.078 0.922 33 H 0.122 0.878 34 H 0.039 0.961 35 H 0.122 0.878 36 H 0.114 0.886 37 H 0.119 0.881 38 H 0.097 0.903 39 H 0.219 0.781 40 H 0.259 0.741 41 H 0.296 0.704 42 H 0.078 0.922 43 H 0.097 0.903 44 H 0.034 0.966 45 H 0.095 0.905 46 H 0.020 0.980 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.409 -27.296 -8.198 28.602 hybrid contribution 0.531 2.788 -0.856 2.965 sum -1.878 -24.507 -9.054 26.193 Atomic orbital electron populations 1.70141 1.06664 1.25873 1.55321 1.25965 0.96171 1.01630 1.00630 0.85262 0.78142 0.79494 0.77492 1.21324 1.22049 1.19160 1.19466 0.91242 0.85223 1.43605 0.91769 1.44330 1.34310 1.04611 1.50656 1.21145 0.97737 0.85732 0.93527 1.22487 0.88981 1.00016 0.95647 1.61976 1.35327 1.02561 1.24851 1.22755 0.95654 0.92483 0.93034 0.93195 1.22694 1.03383 0.91078 0.97718 1.22449 0.96860 0.94025 0.89153 1.48334 1.52376 1.08805 1.24388 1.17479 0.77717 0.87223 0.79856 1.90797 1.50133 1.57878 1.45717 1.21731 1.11623 0.95361 0.98286 1.23902 0.85845 0.87498 0.98409 1.68601 1.18412 1.13969 1.23442 1.25879 0.84871 1.01938 0.81710 1.68225 1.17494 1.05165 1.37178 1.19548 0.85032 0.87185 0.86673 1.84533 1.37551 1.64825 1.42506 1.22174 0.98632 0.81834 0.97865 1.22599 0.99184 0.90433 0.95824 1.20523 0.88309 0.94880 0.89891 0.94072 0.96244 0.92157 0.87775 0.96098 0.87827 0.88618 0.88124 0.90304 0.78136 0.74062 0.70440 0.92155 0.90278 0.96565 0.90492 0.97990 0.93422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.71 11.26 21.65 0.24 -55.47 16 2 C -0.05 -2.70 5.03 84.86 0.43 -2.28 16 3 Si 0.97 45.03 29.57 68.60 2.03 47.06 16 4 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 5 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.27 -14.61 9.60 84.04 0.81 -13.80 16 8 H 0.06 3.44 7.86 -2.91 -0.02 3.42 16 9 N -0.61 -30.97 3.01 -698.13 -2.10 -33.07 16 10 C 0.14 5.78 6.69 86.35 0.58 6.35 16 11 C 0.06 1.78 5.53 86.38 0.48 2.26 16 12 N -0.52 -16.11 4.53 -861.92 -3.90 -20.02 16 13 C 0.07 1.64 2.73 46.30 0.13 1.76 16 14 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 15 C -0.11 -1.67 5.76 31.78 0.18 -1.48 16 16 C 0.10 1.26 5.99 86.73 0.52 1.78 16 17 N -0.61 -12.48 3.33 -815.55 -2.71 -15.19 16 18 C 0.59 13.86 7.17 86.70 0.62 14.49 16 19 O -0.57 -17.57 16.84 2.20 0.04 -17.54 16 20 C -0.26 -4.71 5.35 -19.83 -0.11 -4.82 16 21 C 0.21 2.69 9.75 85.02 0.83 3.52 16 22 N -0.53 -6.68 10.42 -199.12 -2.07 -8.76 16 23 C 0.34 3.89 12.27 180.86 2.22 6.11 16 24 N -0.56 -9.29 10.45 -312.05 -3.26 -12.55 16 25 C 0.40 7.72 7.83 85.17 0.67 8.39 16 26 O -0.48 -9.53 12.74 -79.46 -1.01 -10.54 16 27 C 0.12 2.91 4.96 86.85 0.43 3.35 16 28 C 0.05 1.85 5.39 86.38 0.47 2.31 16 29 C 0.19 9.27 5.35 86.35 0.46 9.73 16 30 H 0.25 14.46 8.31 -92.70 -0.77 13.68 16 31 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 2.32 7.96 -2.39 -0.02 2.30 16 33 H 0.10 2.40 7.27 -2.39 -0.02 2.39 16 34 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.10 1.18 8.00 -2.39 -0.02 1.16 16 36 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.10 0.77 5.99 -2.39 -0.01 0.76 16 38 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.20 1.52 6.53 -2.91 -0.02 1.50 16 40 H 0.24 0.69 8.06 -2.91 -0.02 0.67 16 41 H 0.43 5.38 9.06 -74.06 -0.67 4.71 16 42 H 0.06 1.74 7.75 -2.39 -0.02 1.72 16 43 H 0.08 2.08 8.01 -2.39 -0.02 2.06 16 44 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.08 2.67 6.45 -2.39 -0.02 2.65 16 46 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 47 H 0.05 2.63 6.40 -2.39 -0.02 2.62 16 Total: -1.00 -75.89 377.47 -3.71 -79.60 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 0.34 Total: 8.80 kcal Atomic # 6 Polarization: 28.96 SS G_CDS: 8.71 Total: 37.67 kcal Atomic # 7 Polarization: -131.24 SS G_CDS: -13.81 Total: -145.05 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -0.98 Total: -28.08 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -75.89 -3.71 -79.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052041300.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.025 kcal (2) G-P(sol) polarization free energy of solvation -75.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds