Wall clock time and date at job start Wed Apr 1 2020 04:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 119.99899 * 2 1 4 4 H 1.48505 * 109.47388 * 240.00218 * 3 2 1 5 5 H 1.48500 * 109.47185 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47079 * 120.00083 * 3 2 1 7 7 C 1.38807 * 120.00359 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00190 * 196.63671 * 7 2 1 9 9 N 1.36945 * 119.99951 * 16.36477 * 7 2 1 10 10 C 1.44576 * 118.64146 * 207.39136 * 9 7 2 11 11 C 1.54865 * 109.60258 * 270.70083 * 10 9 7 12 12 C 1.47095 * 110.32080 * 288.73790 * 11 10 9 13 13 C 1.52569 * 114.32899 * 62.79664 * 12 11 10 14 14 H 1.09003 * 109.48725 * 34.95479 * 13 12 11 15 15 N 1.46492 * 109.49174 * 155.02181 * 13 12 11 16 16 C 1.34776 * 120.00481 * 205.00235 * 15 13 12 17 17 O 1.21289 * 119.99822 * 359.97438 * 16 15 13 18 18 C 1.50692 * 120.00691 * 179.97438 * 16 15 13 19 19 H 1.09008 * 109.09468 * 39.10872 * 18 16 15 20 20 C 1.53335 * 109.10872 * 280.00160 * 18 16 15 21 21 C 1.50659 * 107.87857 * 282.28203 * 20 18 16 22 22 C 1.33071 * 130.80303 * 152.72408 * 21 20 18 23 23 N 1.34740 * 108.03204 * 179.68006 * 22 21 20 24 24 C 1.30830 * 109.53932 * 0.03658 * 23 22 21 25 25 N 1.35038 * 108.33582 * 0.23274 * 24 23 22 26 26 C 1.34576 * 131.29099 * 179.07487 * 25 24 23 27 27 O 1.21495 * 120.70589 * 9.58860 * 26 25 24 28 28 N 1.34837 * 118.59797 * 189.59341 * 26 25 24 29 29 C 1.50885 * 109.35963 * 274.99209 * 13 12 11 30 30 C 1.47602 * 118.64336 * 27.11695 * 9 7 2 31 31 H 0.96996 * 120.00327 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.45264 * 30.74185 * 10 9 7 33 33 H 1.09001 * 109.44808 * 150.68749 * 10 9 7 34 34 H 1.08999 * 109.32324 * 48.99503 * 11 10 9 35 35 H 1.08995 * 109.32922 * 168.47290 * 11 10 9 36 36 H 1.08993 * 108.51134 * 184.05111 * 12 11 10 37 37 H 1.09006 * 108.51102 * 301.70370 * 12 11 10 38 38 H 0.97007 * 120.00242 * 24.99965 * 15 13 12 39 39 H 1.09001 * 109.77539 * 41.87553 * 20 18 16 40 40 H 1.08997 * 109.78043 * 162.68011 * 20 18 16 41 41 H 1.07993 * 125.98296 * 359.63604 * 22 21 20 42 42 H 1.08005 * 125.82724 * 180.21740 * 24 23 22 43 43 H 0.96999 * 118.55623 * 191.81548 * 28 26 25 44 44 H 1.08998 * 109.36185 * 212.07222 * 29 13 12 45 45 H 1.08997 * 109.36552 * 331.81509 * 29 13 12 46 46 H 1.08997 * 108.94628 * 258.58326 * 30 9 7 47 47 H 1.09008 * 108.94575 * 17.21060 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0564 -1.2217 0.2672 9 7 1.3672 -2.3639 -0.3352 10 6 1.8553 -3.6091 0.2140 11 6 2.9290 -4.2070 -0.7283 12 6 2.3038 -4.7101 -1.9611 13 6 1.6190 -3.6368 -2.8018 14 1 2.1805 -2.7052 -2.7297 15 7 1.5677 -4.0700 -4.2002 16 6 1.4902 -3.1552 -5.1868 17 8 1.4626 -1.9730 -4.9169 18 6 1.4380 -3.6008 -6.6254 19 1 0.8140 -4.4915 -6.7004 20 6 2.8567 -3.9410 -7.0974 21 6 3.5726 -2.6461 -7.3812 22 6 4.8676 -2.3420 -7.3434 23 7 5.0021 -1.0466 -7.6887 24 6 3.8240 -0.5361 -7.9399 25 7 2.8955 -1.4991 -7.7552 26 6 1.5548 -1.4735 -7.8683 27 8 0.9913 -0.5118 -8.3517 28 7 0.8499 -2.5377 -7.4339 29 6 0.2163 -3.4199 -2.2900 30 6 0.2007 -2.2925 -1.2368 31 1 -0.4850 0.8400 0.0004 32 1 2.2944 -3.4259 1.1946 33 1 1.0276 -4.3115 0.3124 34 1 3.6565 -3.4358 -0.9815 35 1 3.4378 -5.0268 -0.2213 36 1 3.0722 -5.1877 -2.5688 37 1 1.5613 -5.4610 -1.6910 38 1 1.5894 -5.0155 -4.4162 39 1 3.3833 -4.4902 -6.3169 40 1 2.8092 -4.5429 -8.0048 41 1 5.6701 -3.0154 -7.0810 42 1 3.6276 0.4818 -8.2430 43 1 -0.0891 -2.5993 -7.6691 44 1 -0.4335 -3.1468 -3.1215 45 1 -0.1482 -4.3401 -1.8336 46 1 -0.7104 -2.3702 -0.6435 47 1 0.2071 -1.3299 -1.7482 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052584206.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:18 Heat of formation + Delta-G solvation = 37.447876 kcal Electronic energy + Delta-G solvation = -32173.387375 eV Core-core repulsion = 27972.624113 eV Total energy + Delta-G solvation = -4200.763262 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.25595 -40.29098 -39.33860 -37.91096 -36.27088 -34.77918 -33.30632 -32.96088 -32.18799 -31.02866 -30.51952 -28.92683 -26.13246 -25.10372 -24.37726 -23.73137 -23.24687 -21.69500 -21.04660 -20.30375 -19.34797 -19.21609 -18.52000 -17.52917 -17.19215 -16.64274 -16.32623 -16.20506 -15.44945 -15.23615 -14.90884 -14.76261 -14.45262 -14.19344 -14.02165 -13.81422 -13.62156 -13.24935 -13.08902 -13.03560 -12.80163 -12.61333 -12.45180 -11.96429 -11.64553 -11.13398 -11.08688 -10.92344 -10.73492 -10.53265 -10.41995 -10.38739 -10.35722 -10.24957 -10.12352 -9.95845 -9.73042 -9.59958 -9.33873 -8.89770 -8.79664 -8.32986 -6.62934 -5.73391 -3.17564 0.97467 1.95143 2.56523 2.63451 2.80048 3.01967 3.24523 3.44290 3.50641 3.54152 4.03071 4.11591 4.42137 4.42528 4.56618 4.60727 4.64948 4.98216 5.08448 5.13834 5.15205 5.24023 5.46805 5.53087 5.57967 5.67511 5.94108 6.03344 6.05796 6.15445 6.19711 6.31066 6.38527 6.42661 6.44823 6.52179 6.60422 6.69692 6.82019 6.86851 6.92784 7.02421 7.41733 7.51353 7.57732 7.72532 7.77864 7.88003 8.25640 8.52638 9.28758 9.95576 10.39759 11.34205 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010784 B = 0.003859 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.903828 B = 7254.015598 C = 8234.727505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.010 3.990 3 Si 0.897 3.103 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.262 4.262 8 H 0.064 0.936 9 N -0.590 5.590 10 C 0.156 3.844 11 C -0.146 4.146 12 C -0.104 4.104 13 C 0.154 3.846 14 H 0.103 0.897 15 N -0.721 5.721 16 C 0.486 3.514 17 O -0.507 6.507 18 C 0.120 3.880 19 H 0.128 0.872 20 C -0.049 4.049 21 C -0.038 4.038 22 C 0.013 3.987 23 N -0.483 5.483 24 C 0.258 3.742 25 N -0.453 5.453 26 C 0.737 3.263 27 O -0.529 6.529 28 N -0.704 5.704 29 C -0.146 4.146 30 C 0.183 3.817 31 H 0.254 0.746 32 H 0.046 0.954 33 H 0.031 0.969 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.048 0.952 37 H 0.054 0.946 38 H 0.392 0.608 39 H 0.115 0.885 40 H 0.104 0.896 41 H 0.180 0.820 42 H 0.219 0.781 43 H 0.425 0.575 44 H 0.053 0.947 45 H 0.046 0.954 46 H 0.026 0.974 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.678 -16.152 -15.826 22.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.189 4.189 3 Si 0.727 3.273 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.392 4.392 8 H 0.082 0.918 9 N -0.312 5.312 10 C 0.028 3.972 11 C -0.187 4.187 12 C -0.142 4.142 13 C 0.051 3.949 14 H 0.121 0.879 15 N -0.373 5.373 16 C 0.268 3.732 17 O -0.380 6.380 18 C 0.010 3.990 19 H 0.145 0.855 20 C -0.088 4.088 21 C -0.145 4.145 22 C -0.129 4.129 23 N -0.200 5.200 24 C -0.024 4.024 25 N -0.158 5.158 26 C 0.438 3.562 27 O -0.400 6.400 28 N -0.360 5.360 29 C -0.186 4.186 30 C 0.058 3.942 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.225 0.775 39 H 0.133 0.867 40 H 0.123 0.877 41 H 0.197 0.803 42 H 0.236 0.764 43 H 0.264 0.736 44 H 0.072 0.928 45 H 0.065 0.935 46 H 0.044 0.956 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.997 -14.123 -15.890 21.631 hybrid contribution -0.776 -0.037 -0.022 0.777 sum 3.221 -14.159 -15.912 21.542 Atomic orbital electron populations 1.70032 1.05279 1.25595 1.53719 1.25002 0.95195 0.98365 1.00354 0.86454 0.79094 0.83621 0.78120 1.20933 1.21640 1.20884 1.19104 0.92570 0.85121 1.42408 0.91831 1.43655 1.34041 1.01987 1.51474 1.20693 0.93820 0.88353 0.94316 1.21448 1.00557 0.99994 0.96712 1.20556 0.99194 0.97327 0.97162 1.20568 0.97873 0.99387 0.77038 0.87936 1.46287 1.74883 1.08881 1.07243 1.20818 0.77976 0.87224 0.87172 1.90858 1.46961 1.16638 1.83532 1.21106 0.97195 0.91382 0.89351 0.85456 1.20515 0.91629 0.92755 1.03941 1.21279 0.93656 0.89438 1.10115 1.21874 0.94218 0.93222 1.03620 1.70788 1.22827 1.08644 1.17753 1.25358 0.81602 0.96020 0.99469 1.43776 1.06987 1.12214 1.52793 1.15542 0.79952 0.82925 0.77813 1.91030 1.69109 1.31796 1.48040 1.44657 1.14448 1.22367 1.54556 1.22483 0.95200 1.00960 0.99943 1.20983 0.88960 0.95476 0.88813 0.93645 0.93560 0.95038 0.91936 0.92943 0.93353 0.92762 0.77491 0.86692 0.87737 0.80281 0.76428 0.73629 0.92821 0.93493 0.95570 0.90699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.88 11.10 55.49 0.62 -26.27 16 2 C 0.01 0.28 4.84 -17.43 -0.08 0.20 16 3 Si 0.90 22.89 29.58 -169.99 -5.03 17.86 16 4 H -0.28 -7.35 7.11 56.52 0.40 -6.95 16 5 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.26 -7.25 9.43 -15.06 -0.14 -7.39 16 8 H 0.06 1.73 7.88 -52.49 -0.41 1.32 16 9 N -0.59 -14.42 2.26 -171.87 -0.39 -14.81 16 10 C 0.16 3.11 5.65 -4.09 -0.02 3.09 16 11 C -0.15 -2.37 5.74 -28.58 -0.16 -2.54 16 12 C -0.10 -1.44 4.70 -29.79 -0.14 -1.58 16 13 C 0.15 2.51 2.07 -69.22 -0.14 2.36 16 14 H 0.10 2.23 6.92 -51.93 -0.36 1.87 16 15 N -0.72 -8.37 4.93 -55.07 -0.27 -8.64 16 16 C 0.49 6.46 6.53 -10.99 -0.07 6.39 16 17 O -0.51 -10.09 15.70 5.55 0.09 -10.01 16 18 C 0.12 0.96 3.54 -69.22 -0.25 0.72 16 19 H 0.13 0.42 8.14 -51.92 -0.42 0.00 16 20 C -0.05 -0.32 5.98 -27.73 -0.17 -0.49 16 21 C -0.04 -0.42 6.39 -81.47 -0.52 -0.94 16 22 C 0.01 0.15 11.83 -18.07 -0.21 -0.06 16 23 N -0.48 -6.80 11.27 -14.82 -0.17 -6.97 16 24 C 0.26 3.52 12.54 -90.10 -1.13 2.39 16 25 N -0.45 -6.15 2.85 -64.88 -0.19 -6.34 16 26 C 0.74 10.45 7.91 -87.04 -0.69 9.76 16 27 O -0.53 -9.01 17.75 5.37 0.10 -8.91 16 28 N -0.70 -7.34 4.84 -60.06 -0.29 -7.63 16 29 C -0.15 -2.66 5.39 -27.12 -0.15 -2.81 16 30 C 0.18 4.41 4.71 -2.76 -0.01 4.39 16 31 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.05 0.95 7.99 -51.93 -0.41 0.53 16 33 H 0.03 0.59 8.06 -51.93 -0.42 0.17 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.55 8.04 -51.93 -0.42 0.13 16 37 H 0.05 0.68 7.35 -51.93 -0.38 0.30 16 38 H 0.39 2.79 8.60 -40.82 -0.35 2.44 16 39 H 0.11 0.54 8.01 -51.93 -0.42 0.13 16 40 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.18 1.52 8.06 -52.49 -0.42 1.10 16 42 H 0.22 2.42 8.06 -52.48 -0.42 2.00 16 43 H 0.42 3.51 8.90 -40.82 -0.36 3.15 16 44 H 0.05 0.98 7.85 -51.93 -0.41 0.58 16 45 H 0.05 0.77 7.31 -51.93 -0.38 0.39 16 46 H 0.03 0.68 8.03 -51.93 -0.42 0.26 16 47 H 0.07 2.12 6.40 -51.92 -0.33 1.78 16 LS Contribution 377.19 15.07 5.68 5.68 Total: -1.00 -38.45 377.19 -10.48 -48.93 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -6.74 Total: 3.59 kcal Atomic # 6 Polarization: 17.38 SS G_CDS: -3.89 Total: 13.49 kcal Atomic # 7 Polarization: -69.96 SS G_CDS: -0.69 Total: -70.65 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: 0.18 Total: -18.92 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.03 Total: 17.86 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -38.45 -10.48 -48.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052584206.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.380 kcal (2) G-P(sol) polarization free energy of solvation -38.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds