Wall clock time and date at job start Wed Apr 1 2020 04:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00460 * 2 1 4 4 H 1.48494 * 109.47188 * 240.00437 * 3 2 1 5 5 H 1.48507 * 109.46768 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46913 * 119.99926 * 3 2 1 7 7 C 1.38810 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00301 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99949 * 359.97438 * 7 2 1 10 10 C 1.47680 * 134.45670 * 179.97438 * 9 7 2 11 11 C 1.53442 * 85.97848 * 155.68203 * 10 9 7 12 12 C 1.47666 * 134.45924 * 359.97298 * 9 7 2 13 13 C 1.52895 * 113.55506 * 137.63028 * 11 10 9 14 14 N 1.47347 * 108.03968 * 179.97438 * 13 11 10 15 15 C 1.34780 * 121.04994 * 131.60808 * 14 13 11 16 16 O 1.21278 * 119.99882 * 354.76408 * 15 14 13 17 17 C 1.50692 * 119.99732 * 175.04299 * 15 14 13 18 18 H 1.09008 * 109.69180 * 334.12092 * 17 15 14 19 19 C 1.53436 * 109.69231 * 213.57718 * 17 15 14 20 20 C 1.53127 * 109.55041 * 190.60770 * 19 17 15 21 21 C 1.53419 * 109.61766 * 69.98991 * 20 19 17 22 22 C 1.50596 * 108.33524 * 310.18789 * 21 20 19 23 23 N 1.32908 * 129.16559 * 196.56095 * 22 21 20 24 24 N 1.29017 * 108.64242 * 179.88570 * 23 22 21 25 25 N 1.29110 * 110.25433 * 0.02562 * 24 23 22 26 26 H 0.96998 * 126.00763 * 180.02562 * 25 24 23 27 27 C 1.34400 * 107.98748 * 0.05461 * 25 24 23 28 28 C 1.47125 * 117.88959 * 311.87259 * 14 13 11 29 29 C 1.52768 * 108.97558 * 51.90650 * 28 14 13 30 30 O 1.42490 * 113.81203 * 268.76156 * 11 10 9 31 31 H 0.96999 * 119.99515 * 359.97438 * 1 2 3 32 32 H 1.09001 * 113.78935 * 41.41683 * 10 9 7 33 33 H 1.09001 * 113.89642 * 269.96582 * 10 9 7 34 34 H 1.08992 * 113.79668 * 90.04455 * 12 9 7 35 35 H 1.09006 * 113.78480 * 318.57418 * 12 9 7 36 36 H 1.09001 * 109.74441 * 60.34256 * 13 11 10 37 37 H 1.08996 * 109.74818 * 299.61443 * 13 11 10 38 38 H 1.08997 * 109.45621 * 310.59086 * 19 17 15 39 39 H 1.08999 * 109.45917 * 70.54606 * 19 17 15 40 40 H 1.08998 * 109.42529 * 309.95534 * 20 19 17 41 41 H 1.09000 * 109.44573 * 190.04249 * 20 19 17 42 42 H 1.08999 * 109.69670 * 190.47567 * 21 20 19 43 43 H 1.09005 * 109.72311 * 69.91640 * 21 20 19 44 44 H 1.09005 * 109.59075 * 171.73099 * 28 14 13 45 45 H 1.08996 * 109.59418 * 292.18511 * 28 14 13 46 46 H 1.08997 * 109.56570 * 186.06533 * 29 28 14 47 47 H 1.08994 * 109.36058 * 66.04354 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 1.7211 -3.8109 -0.0015 11 6 0.3489 -4.0812 0.6298 12 6 -0.1045 -2.7567 0.0004 13 6 -0.3599 -5.3055 0.0500 14 7 -1.6548 -5.4514 0.7378 15 6 -2.7936 -5.6422 0.0426 16 8 -2.7782 -5.6014 -1.1694 17 6 -4.0871 -5.8999 0.7715 18 1 -3.8780 -6.3434 1.7451 19 6 -4.9642 -6.8517 -0.0525 20 6 -6.3706 -6.9042 0.5509 21 6 -7.0838 -5.5670 0.3123 22 6 -6.1654 -4.4559 0.7480 23 7 -6.4503 -3.1834 1.0049 24 7 -5.3641 -2.5792 1.3507 25 7 -4.3696 -3.4022 1.3324 26 1 -3.4492 -3.1896 1.5530 27 6 -4.8335 -4.6054 0.9535 28 6 -1.6660 -5.3763 2.2071 29 6 -0.9450 -4.1026 2.6448 30 8 0.3582 -4.0668 2.0546 31 1 -0.4849 0.8401 0.0004 32 1 2.5600 -4.0344 0.6576 33 1 1.8380 -4.2360 -0.9983 34 1 -0.5309 -2.8668 -0.9965 35 1 -0.7164 -2.1425 0.6612 36 1 0.2474 -6.1954 0.2156 37 1 -0.5241 -5.1645 -1.0183 38 1 -5.0238 -6.4926 -1.0799 39 1 -4.5264 -7.8498 -0.0418 40 1 -6.2985 -7.0909 1.6224 41 1 -6.9377 -7.7072 0.0802 42 1 -8.0043 -5.5324 0.8950 43 1 -7.3156 -5.4577 -0.7472 44 1 -2.6956 -5.3529 2.5640 45 1 -1.1528 -6.2441 2.6213 46 1 -0.8527 -4.0903 3.7308 47 1 -1.5162 -3.2337 2.3183 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053395302.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:52 Heat of formation + Delta-G solvation = 85.571575 kcal Electronic energy + Delta-G solvation = -32566.555863 eV Core-core repulsion = 28367.879402 eV Total energy + Delta-G solvation = -4198.676461 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.63336 -40.72179 -39.17201 -36.98857 -36.43496 -34.73149 -33.98002 -32.35746 -30.97980 -30.34227 -30.13633 -28.08618 -26.43491 -25.24004 -24.61246 -23.58339 -23.30149 -22.90094 -21.80808 -20.08867 -19.55758 -19.08826 -18.16114 -17.59934 -16.93514 -16.46580 -16.19661 -15.86468 -15.57155 -15.12604 -14.95902 -14.61694 -14.33604 -14.23272 -14.17935 -13.95101 -13.80482 -13.45398 -13.37228 -12.80147 -12.66607 -12.49090 -12.10562 -11.75453 -11.58927 -11.53305 -11.46319 -11.32853 -11.28073 -11.02972 -10.88604 -10.87812 -10.78877 -10.49958 -10.40349 -10.13149 -9.85915 -9.69122 -9.42614 -9.02431 -8.89011 -8.48946 -6.96186 -5.81252 -3.14091 1.36839 2.26726 2.41682 2.57091 2.66556 3.38151 3.41947 3.43922 3.81287 3.91364 4.13632 4.23632 4.37926 4.38894 4.54250 4.63501 4.65453 4.83127 4.86762 4.92979 5.01439 5.05273 5.12351 5.13768 5.18899 5.34036 5.43059 5.54469 5.55028 5.59676 5.60203 5.67571 5.71327 5.78327 5.86044 5.98354 6.04753 6.12646 6.25248 6.37419 6.40537 6.66794 6.85078 7.03355 7.12235 7.39248 7.61886 7.89843 7.91255 8.34792 8.98478 9.65617 10.49686 11.35898 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014163 B = 0.003609 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.476839 B = 7756.855169 C = 8849.939155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.223 4.223 8 H 0.081 0.919 9 N -0.601 5.601 10 C 0.137 3.863 11 C 0.046 3.954 12 C 0.150 3.850 13 C 0.098 3.902 14 N -0.611 5.611 15 C 0.514 3.486 16 O -0.518 6.518 17 C -0.031 4.031 18 H 0.111 0.889 19 C -0.103 4.103 20 C -0.117 4.117 21 C -0.035 4.035 22 C -0.005 4.005 23 N -0.260 5.260 24 N -0.071 5.071 25 N -0.374 5.374 26 H 0.448 0.552 27 C -0.012 4.012 28 C 0.063 3.937 29 C 0.047 3.953 30 O -0.335 6.335 31 H 0.255 0.745 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.034 0.966 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.108 0.892 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.624 -19.043 5.700 22.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.202 4.202 3 Si 0.744 3.256 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.351 4.351 8 H 0.099 0.901 9 N -0.327 5.327 10 C 0.011 3.989 11 C 0.004 3.996 12 C 0.025 3.975 13 C -0.025 4.025 14 N -0.346 5.346 15 C 0.301 3.699 16 O -0.392 6.392 17 C -0.055 4.055 18 H 0.129 0.871 19 C -0.141 4.141 20 C -0.155 4.155 21 C -0.074 4.074 22 C -0.145 4.145 23 N -0.126 5.126 24 N -0.050 5.050 25 N -0.094 5.094 26 H 0.295 0.705 27 C -0.148 4.148 28 C -0.060 4.060 29 C -0.031 4.031 30 O -0.252 6.252 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.051 0.949 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.122 0.878 38 H 0.107 0.893 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.101 0.899 42 H 0.105 0.895 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.105 0.895 46 H 0.126 0.874 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.992 -17.156 5.392 21.077 hybrid contribution 1.343 0.211 -0.132 1.366 sum -9.649 -16.945 5.261 20.197 Atomic orbital electron populations 1.69775 1.05091 1.25617 1.56481 1.24766 0.95663 0.97556 1.02198 0.86182 0.78487 0.83021 0.77959 1.21120 1.21513 1.21009 1.18950 0.90263 0.81681 1.44158 0.90075 1.45745 1.01698 0.99153 1.86086 1.22479 0.93058 0.86789 0.96580 1.23796 0.99579 0.94519 0.81719 1.22682 0.88967 0.88770 0.97117 1.22343 0.82294 0.98717 0.99115 1.48272 1.07678 1.71812 1.06807 1.20374 0.84420 0.77140 0.88004 1.90734 1.85430 1.49568 1.13496 1.20011 0.92482 0.91408 1.01554 0.87083 1.21561 0.94052 0.98163 1.00356 1.21647 0.95198 0.96936 1.01701 1.20010 0.96223 0.88980 1.02185 1.21685 0.92539 0.94366 1.05917 1.74865 1.18365 1.04907 1.14450 1.78676 0.89862 1.16886 1.19548 1.44909 1.12758 1.06791 1.44935 0.70534 1.21281 0.95510 0.89082 1.08957 1.22529 1.02049 1.01020 0.80420 1.22791 0.86267 0.94955 0.99103 1.87981 1.25031 1.94163 1.18074 0.93514 0.92452 0.93151 0.94877 0.90886 0.90782 0.87774 0.89341 0.90047 0.91201 0.89929 0.89477 0.89537 0.89632 0.89524 0.87426 0.93188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.51 11.39 55.49 0.63 -26.87 16 2 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 3 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.22 -6.27 10.70 -15.06 -0.16 -6.44 16 8 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 9 N -0.60 -15.30 3.70 -180.27 -0.67 -15.97 16 10 C 0.14 2.73 8.33 -3.18 -0.03 2.70 16 11 C 0.05 0.82 1.21 -90.29 -0.11 0.71 16 12 C 0.15 3.49 6.65 -3.16 -0.02 3.47 16 13 C 0.10 1.43 5.80 -3.63 -0.02 1.41 16 14 N -0.61 -7.64 3.03 -172.71 -0.52 -8.16 16 15 C 0.51 6.78 6.68 -10.99 -0.07 6.71 16 16 O -0.52 -8.83 15.55 5.56 0.09 -8.75 16 17 C -0.03 -0.30 2.09 -92.78 -0.19 -0.50 16 18 H 0.11 0.75 6.29 -51.92 -0.33 0.43 16 19 C -0.10 -0.84 5.05 -26.44 -0.13 -0.97 16 20 C -0.12 -0.72 5.89 -26.45 -0.16 -0.88 16 21 C -0.03 -0.30 6.31 -27.72 -0.17 -0.47 16 22 C 0.00 -0.06 7.11 -83.12 -0.59 -0.65 16 23 N -0.26 -4.10 12.40 33.16 0.41 -3.69 16 24 N -0.07 -1.16 13.40 60.35 0.81 -0.35 16 25 N -0.37 -5.24 6.92 33.39 0.23 -5.01 16 26 H 0.45 5.98 7.74 -190.07 -1.47 4.51 16 27 C -0.01 -0.15 6.32 -82.50 -0.52 -0.67 16 28 C 0.06 0.61 6.26 -3.82 -0.02 0.58 16 29 C 0.05 0.60 6.87 37.04 0.25 0.85 16 30 O -0.33 -5.82 10.52 -35.23 -0.37 -6.19 16 31 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.05 0.92 8.09 -51.93 -0.42 0.50 16 34 H 0.03 0.82 7.94 -51.93 -0.41 0.41 16 35 H 0.07 1.87 6.31 -51.93 -0.33 1.54 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.10 1.69 6.89 -51.93 -0.36 1.34 16 38 H 0.09 0.91 7.47 -51.93 -0.39 0.53 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 41 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.09 0.61 5.64 -51.93 -0.29 0.32 16 45 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 47 H 0.05 0.71 5.98 -51.93 -0.31 0.40 16 LS Contribution 370.28 15.07 5.58 5.58 Total: -1.00 -36.11 370.28 -8.54 -44.65 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -7.66 Total: 1.81 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: -2.05 Total: 5.60 kcal Atomic # 7 Polarization: -60.95 SS G_CDS: 0.89 Total: -60.05 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.28 Total: -14.93 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.11 -8.54 -44.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053395302.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.220 kcal (2) G-P(sol) polarization free energy of solvation -36.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds