Wall clock time and date at job start Wed Apr 1 2020 04:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00460 * 2 1 4 4 H 1.48494 * 109.47188 * 240.00437 * 3 2 1 5 5 H 1.48507 * 109.46768 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46913 * 119.99926 * 3 2 1 7 7 C 1.38810 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00301 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99949 * 359.97438 * 7 2 1 10 10 C 1.47680 * 134.45670 * 179.97438 * 9 7 2 11 11 C 1.53442 * 85.97848 * 155.68203 * 10 9 7 12 12 C 1.47666 * 134.45924 * 359.97298 * 9 7 2 13 13 C 1.52895 * 113.55506 * 137.63028 * 11 10 9 14 14 N 1.47347 * 108.03968 * 179.97438 * 13 11 10 15 15 C 1.34780 * 121.04994 * 131.60808 * 14 13 11 16 16 O 1.21278 * 119.99882 * 354.76408 * 15 14 13 17 17 C 1.50692 * 119.99732 * 175.04299 * 15 14 13 18 18 H 1.09008 * 109.69180 * 334.12092 * 17 15 14 19 19 C 1.53436 * 109.69231 * 213.57718 * 17 15 14 20 20 C 1.53127 * 109.55041 * 190.60770 * 19 17 15 21 21 C 1.53419 * 109.61766 * 69.98991 * 20 19 17 22 22 C 1.50596 * 108.33524 * 310.18789 * 21 20 19 23 23 N 1.32908 * 129.16559 * 196.56095 * 22 21 20 24 24 N 1.29017 * 108.64242 * 179.88570 * 23 22 21 25 25 N 1.29110 * 110.25433 * 0.02562 * 24 23 22 26 26 H 0.96998 * 126.00763 * 180.02562 * 25 24 23 27 27 C 1.34400 * 107.98748 * 0.05461 * 25 24 23 28 28 C 1.47125 * 117.88959 * 311.87259 * 14 13 11 29 29 C 1.52768 * 108.97558 * 51.90650 * 28 14 13 30 30 O 1.42490 * 113.81203 * 268.76156 * 11 10 9 31 31 H 0.96999 * 119.99515 * 359.97438 * 1 2 3 32 32 H 1.09001 * 113.78935 * 41.41683 * 10 9 7 33 33 H 1.09001 * 113.89642 * 269.96582 * 10 9 7 34 34 H 1.08992 * 113.79668 * 90.04455 * 12 9 7 35 35 H 1.09006 * 113.78480 * 318.57418 * 12 9 7 36 36 H 1.09001 * 109.74441 * 60.34256 * 13 11 10 37 37 H 1.08996 * 109.74818 * 299.61443 * 13 11 10 38 38 H 1.08997 * 109.45621 * 310.59086 * 19 17 15 39 39 H 1.08999 * 109.45917 * 70.54606 * 19 17 15 40 40 H 1.08998 * 109.42529 * 309.95534 * 20 19 17 41 41 H 1.09000 * 109.44573 * 190.04249 * 20 19 17 42 42 H 1.08999 * 109.69670 * 190.47567 * 21 20 19 43 43 H 1.09005 * 109.72311 * 69.91640 * 21 20 19 44 44 H 1.09005 * 109.59075 * 171.73099 * 28 14 13 45 45 H 1.08996 * 109.59418 * 292.18511 * 28 14 13 46 46 H 1.08997 * 109.56570 * 186.06533 * 29 28 14 47 47 H 1.08994 * 109.36058 * 66.04354 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 1.7211 -3.8109 -0.0015 11 6 0.3489 -4.0812 0.6298 12 6 -0.1045 -2.7567 0.0004 13 6 -0.3599 -5.3055 0.0500 14 7 -1.6548 -5.4514 0.7378 15 6 -2.7936 -5.6422 0.0426 16 8 -2.7782 -5.6014 -1.1694 17 6 -4.0871 -5.8999 0.7715 18 1 -3.8780 -6.3434 1.7451 19 6 -4.9642 -6.8517 -0.0525 20 6 -6.3706 -6.9042 0.5509 21 6 -7.0838 -5.5670 0.3123 22 6 -6.1654 -4.4559 0.7480 23 7 -6.4503 -3.1834 1.0049 24 7 -5.3641 -2.5792 1.3507 25 7 -4.3696 -3.4022 1.3324 26 1 -3.4492 -3.1896 1.5530 27 6 -4.8335 -4.6054 0.9535 28 6 -1.6660 -5.3763 2.2071 29 6 -0.9450 -4.1026 2.6448 30 8 0.3582 -4.0668 2.0546 31 1 -0.4849 0.8401 0.0004 32 1 2.5600 -4.0344 0.6576 33 1 1.8380 -4.2360 -0.9983 34 1 -0.5309 -2.8668 -0.9965 35 1 -0.7164 -2.1425 0.6612 36 1 0.2474 -6.1954 0.2156 37 1 -0.5241 -5.1645 -1.0183 38 1 -5.0238 -6.4926 -1.0799 39 1 -4.5264 -7.8498 -0.0418 40 1 -6.2985 -7.0909 1.6224 41 1 -6.9377 -7.7072 0.0802 42 1 -8.0043 -5.5324 0.8950 43 1 -7.3156 -5.4577 -0.7472 44 1 -2.6956 -5.3529 2.5640 45 1 -1.1528 -6.2441 2.6213 46 1 -0.8527 -4.0903 3.7308 47 1 -1.5162 -3.2337 2.3183 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053395302.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:51 Heat of formation + Delta-G solvation = 57.681858 kcal Electronic energy + Delta-G solvation = -32567.765252 eV Core-core repulsion = 28367.879402 eV Total energy + Delta-G solvation = -4199.885850 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.67831 -41.91255 -40.45733 -37.98660 -37.67039 -35.93811 -35.03405 -34.33365 -31.99891 -31.33871 -31.23155 -29.49941 -27.97847 -26.94375 -25.58174 -24.76642 -24.46044 -23.76495 -23.32828 -21.12309 -20.59138 -20.33693 -19.16534 -18.88879 -18.55391 -17.68094 -17.34664 -17.11806 -16.90158 -16.50903 -16.18776 -15.86120 -15.64522 -15.25852 -15.09829 -15.02494 -14.85107 -14.71453 -14.59989 -14.24795 -14.02558 -13.56219 -13.28186 -13.02572 -12.89040 -12.79135 -12.70407 -12.63366 -12.48279 -12.29609 -12.16824 -12.05730 -12.00440 -11.80682 -11.70386 -11.47679 -11.38388 -11.04594 -10.93593 -10.89708 -10.01429 -9.67443 -9.01103 -7.97502 -5.31439 0.32858 1.22420 1.39498 1.39650 1.43396 1.49629 1.55350 1.68074 2.40698 2.54366 3.01908 3.19815 3.24130 3.29757 3.44018 3.52221 3.62972 3.65077 3.80872 3.89374 3.94520 4.09580 4.16427 4.25521 4.30730 4.36560 4.43661 4.52893 4.58763 4.60688 4.64860 4.72563 4.76464 4.84704 4.96402 4.98543 5.04882 5.10722 5.12707 5.16041 5.20255 5.31943 5.38708 5.47375 5.61024 5.82050 6.12700 6.24851 6.81999 6.88563 7.26288 7.53069 8.44868 9.18621 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014163 B = 0.003609 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.476839 B = 7756.855169 C = 8849.939155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.067 4.067 3 Si 0.979 3.021 4 H -0.276 1.276 5 H -0.297 1.297 6 H -0.273 1.273 7 C -0.234 4.234 8 H 0.088 0.912 9 N -0.634 5.634 10 C 0.134 3.866 11 C 0.079 3.921 12 C 0.150 3.850 13 C 0.107 3.893 14 N -0.611 5.611 15 C 0.512 3.488 16 O -0.564 6.564 17 C -0.024 4.024 18 H 0.155 0.845 19 C -0.103 4.103 20 C -0.106 4.106 21 C -0.039 4.039 22 C -0.010 4.010 23 N -0.287 5.287 24 N -0.117 5.117 25 N -0.376 5.376 26 H 0.447 0.553 27 C -0.007 4.007 28 C 0.068 3.932 29 C 0.036 3.964 30 O -0.355 6.355 31 H 0.246 0.754 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.005 0.995 35 H 0.039 0.961 36 H 0.110 0.890 37 H 0.083 0.917 38 H 0.060 0.940 39 H 0.107 0.893 40 H 0.089 0.911 41 H 0.110 0.890 42 H 0.102 0.898 43 H 0.085 0.915 44 H 0.115 0.885 45 H 0.123 0.877 46 H 0.140 0.860 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.571 -22.658 7.369 26.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.260 4.260 3 Si 0.807 3.193 4 H -0.202 1.202 5 H -0.223 1.223 6 H -0.198 1.198 7 C -0.362 4.362 8 H 0.105 0.895 9 N -0.360 5.360 10 C 0.009 3.991 11 C 0.037 3.963 12 C 0.024 3.976 13 C -0.016 4.016 14 N -0.344 5.344 15 C 0.300 3.700 16 O -0.441 6.441 17 C -0.047 4.047 18 H 0.173 0.827 19 C -0.141 4.141 20 C -0.144 4.144 21 C -0.078 4.078 22 C -0.152 4.152 23 N -0.152 5.152 24 N -0.095 5.095 25 N -0.095 5.095 26 H 0.294 0.706 27 C -0.144 4.144 28 C -0.053 4.053 29 C -0.041 4.041 30 O -0.273 6.273 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.022 0.978 35 H 0.057 0.943 36 H 0.128 0.872 37 H 0.101 0.899 38 H 0.079 0.921 39 H 0.126 0.874 40 H 0.108 0.892 41 H 0.128 0.872 42 H 0.120 0.880 43 H 0.104 0.896 44 H 0.133 0.867 45 H 0.141 0.859 46 H 0.158 0.842 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -10.925 -20.799 7.097 24.542 hybrid contribution 1.352 1.306 -0.659 1.992 sum -9.573 -19.493 6.438 22.651 Atomic orbital electron populations 1.70000 1.06619 1.25547 1.58342 1.25629 0.96486 1.00978 1.02865 0.85140 0.77138 0.78564 0.78453 1.20195 1.22326 1.19821 1.19403 0.90946 0.83161 1.42657 0.89458 1.46160 1.02954 1.00724 1.86161 1.22727 0.94668 0.83676 0.98027 1.23200 0.97740 0.93088 0.82317 1.22530 0.87740 0.91917 0.95462 1.22092 0.83634 0.98061 0.97847 1.48364 1.06814 1.71118 1.08131 1.20984 0.85380 0.76061 0.87612 1.90723 1.86130 1.51538 1.15728 1.20265 0.90417 0.90438 1.03541 0.82748 1.21641 0.95219 0.98649 0.98606 1.21660 0.93675 0.95947 1.03082 1.20279 0.96390 0.88844 1.02244 1.22467 0.93619 0.94169 1.04902 1.74810 1.18569 1.06612 1.15189 1.78641 0.90690 1.18157 1.22044 1.44954 1.12406 1.07365 1.44812 0.70644 1.21808 0.95777 0.89265 1.07547 1.22726 1.03879 1.00357 0.78354 1.23149 0.84405 0.95893 1.00661 1.87935 1.27921 1.94288 1.17121 0.94526 0.91264 0.91140 0.97774 0.94277 0.87196 0.89883 0.92093 0.87435 0.89217 0.87158 0.87998 0.89623 0.86675 0.85941 0.84228 0.95756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.93 11.39 21.65 0.25 -59.68 16 2 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16 3 Si 0.98 47.18 29.55 68.60 2.03 49.21 16 4 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 5 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 6 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 7 C -0.23 -13.43 10.70 84.03 0.90 -12.53 16 8 H 0.09 4.75 7.83 -2.91 -0.02 4.72 16 9 N -0.63 -33.18 3.70 -729.12 -2.70 -35.88 16 10 C 0.13 5.26 8.33 86.30 0.72 5.98 16 11 C 0.08 2.80 1.21 -10.48 -0.01 2.79 16 12 C 0.15 7.30 6.65 86.31 0.57 7.87 16 13 C 0.11 2.97 5.80 86.18 0.50 3.47 16 14 N -0.61 -13.93 3.03 -818.71 -2.48 -16.41 16 15 C 0.51 12.68 6.68 87.65 0.59 13.26 16 16 O -0.56 -19.27 15.55 -3.02 -0.05 -19.32 16 17 C -0.02 -0.39 2.09 -12.20 -0.03 -0.42 16 18 H 0.16 1.23 6.29 -2.38 -0.01 1.22 16 19 C -0.10 -1.33 5.05 30.78 0.16 -1.18 16 20 C -0.11 -0.86 5.89 30.78 0.18 -0.68 16 21 C -0.04 -0.57 6.31 29.96 0.19 -0.38 16 22 C -0.01 -0.26 7.11 41.75 0.30 0.04 16 23 N -0.29 -9.27 12.40 -48.99 -0.61 -9.88 16 24 N -0.12 -4.04 13.40 37.02 0.50 -3.55 16 25 N -0.38 -10.79 6.92 -48.27 -0.33 -11.12 16 26 H 0.45 12.50 7.74 -219.68 -1.70 10.80 16 27 C -0.01 -0.17 6.32 41.50 0.26 0.09 16 28 C 0.07 1.05 6.26 86.18 0.54 1.59 16 29 C 0.04 0.85 6.87 71.90 0.49 1.35 16 30 O -0.35 -11.87 10.52 -148.98 -1.57 -13.44 16 31 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 32 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.07 2.50 8.09 -2.39 -0.02 2.49 16 34 H 0.00 0.24 7.94 -2.39 -0.02 0.22 16 35 H 0.04 2.15 6.31 -2.38 -0.02 2.13 16 36 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.08 2.71 6.89 -2.39 -0.02 2.69 16 38 H 0.06 1.17 7.47 -2.39 -0.02 1.15 16 39 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.09 0.45 8.12 -2.39 -0.02 0.43 16 41 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 44 H 0.12 1.12 5.64 -2.38 -0.01 1.11 16 45 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.14 2.39 8.14 -2.39 -0.02 2.37 16 47 H 0.02 0.70 5.98 -2.39 -0.01 0.69 16 Total: -1.00 -85.98 370.28 0.18 -85.80 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -0.68 Total: 16.46 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: 5.82 Total: 17.79 kcal Atomic # 7 Polarization: -131.13 SS G_CDS: -5.38 Total: -136.51 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -1.61 Total: -32.75 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Total: -85.98 0.18 -85.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053395302.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.482 kcal (2) G-P(sol) polarization free energy of solvation -85.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds