Wall clock time and date at job start Wed Apr 1 2020 04:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99751 * 2 1 4 4 H 1.48503 * 109.47402 * 269.99620 * 3 2 1 5 5 H 1.48501 * 109.47317 * 30.00186 * 3 2 1 6 6 H 1.48503 * 109.46939 * 149.99784 * 3 2 1 7 7 C 1.38809 * 120.00229 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00562 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99782 * 359.97438 * 7 2 1 10 10 C 1.47667 * 134.45984 * 179.97438 * 9 7 2 11 11 C 1.53461 * 85.97996 * 204.30233 * 10 9 7 12 12 C 1.47669 * 134.46234 * 0.02562 * 9 7 2 13 13 C 1.52897 * 113.50316 * 222.32651 * 11 10 9 14 14 N 1.47644 * 108.14351 * 276.94961 * 13 11 10 15 15 C 1.34777 * 121.24729 * 131.60052 * 14 13 11 16 16 O 1.21277 * 119.99862 * 175.20901 * 15 14 13 17 17 C 1.50701 * 119.99864 * 355.21012 * 15 14 13 18 18 H 1.08999 * 109.45918 * 324.93804 * 17 15 14 19 19 C 1.53106 * 109.45486 * 204.99047 * 17 15 14 20 20 C 1.53429 * 109.57080 * 169.90511 * 19 17 15 21 21 C 1.50592 * 108.33436 * 49.82379 * 20 19 17 22 22 N 1.32915 * 129.16014 * 163.38470 * 21 20 19 23 23 N 1.29022 * 108.63025 * 180.21129 * 22 21 20 24 24 N 1.29107 * 110.26428 * 359.97438 * 23 22 21 25 25 H 0.96998 * 126.01035 * 179.91264 * 24 23 22 26 26 C 1.34398 * 107.98135 * 359.92741 * 24 23 22 27 27 C 1.50536 * 129.25320 * 180.15596 * 26 24 23 28 28 C 1.47119 * 117.70037 * 311.72350 * 14 13 11 29 29 C 1.53228 * 108.85927 * 52.14317 * 28 14 13 30 30 O 1.42487 * 113.77165 * 91.27682 * 11 10 9 31 31 H 0.96997 * 120.00467 * 0.02562 * 1 2 3 32 32 H 1.09008 * 113.79123 * 90.03650 * 10 9 7 33 33 H 1.08997 * 113.79385 * 318.56573 * 10 9 7 34 34 H 1.09000 * 113.79390 * 41.43368 * 12 9 7 35 35 H 1.08997 * 113.79048 * 269.96190 * 12 9 7 36 36 H 1.08992 * 109.74610 * 36.58320 * 13 11 10 37 37 H 1.09008 * 109.74404 * 157.25450 * 13 11 10 38 38 H 1.08997 * 109.45139 * 289.93842 * 19 17 15 39 39 H 1.09000 * 109.46008 * 49.87836 * 19 17 15 40 40 H 1.09001 * 109.70593 * 290.10748 * 20 19 17 41 41 H 1.09004 * 109.67988 * 169.52730 * 20 19 17 42 42 H 1.08998 * 109.69800 * 43.85845 * 27 26 24 43 43 H 1.09009 * 109.69235 * 283.27853 * 27 26 24 44 44 H 1.09001 * 109.59880 * 292.29732 * 28 14 13 45 45 H 1.09003 * 109.59869 * 171.99364 * 28 14 13 46 46 H 1.09002 * 109.49107 * 65.76392 * 29 28 14 47 47 H 1.08997 * 109.49393 * 185.83403 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 1.7212 -3.8107 0.0019 11 6 0.3477 -4.0811 -0.6269 12 6 -0.1043 -2.7568 0.0019 13 6 -0.3585 -5.3063 -0.0456 14 7 0.1612 -6.5055 -0.7324 15 6 0.5652 -7.5883 -0.0391 16 8 0.9062 -8.5925 -0.6274 17 6 0.5931 -7.5513 1.4672 18 1 0.8737 -6.5522 1.8007 19 6 1.6159 -8.5669 1.9835 20 6 1.8317 -8.3594 3.4883 21 6 0.4836 -8.3062 4.1573 22 7 0.1795 -8.4395 5.4443 23 7 -1.0990 -8.3298 5.5792 24 7 -1.6541 -8.1284 4.4311 25 1 -2.6037 -8.0147 4.2688 26 6 -0.6851 -8.1043 3.5002 27 6 -0.7977 -7.8998 2.0130 28 6 0.2259 -6.4778 -2.2019 29 6 0.9749 -5.2152 -2.6410 30 8 0.3556 -4.0676 -2.0517 31 1 -0.4851 0.8400 -0.0004 32 1 1.8392 -4.2341 0.9995 33 1 2.5589 -4.0344 -0.6586 34 1 -0.7169 -2.1432 -0.6586 35 1 -0.5299 -2.8664 0.9994 36 1 -0.1537 -5.3771 1.0226 37 1 -1.4330 -5.2244 -0.2098 38 1 1.2463 -9.5767 1.8055 39 1 2.5613 -8.4289 1.4588 40 1 2.3630 -7.4228 3.6577 41 1 2.4106 -9.1892 3.8939 42 1 -1.4893 -7.0832 1.8058 43 1 -1.1577 -8.8149 1.5426 44 1 -0.7839 -6.4649 -2.6122 45 1 0.7552 -7.3603 -2.5613 46 1 2.0131 -5.2761 -2.3145 47 1 0.9393 -5.1303 -3.7270 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053507977.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:34 Heat of formation + Delta-G solvation = 82.643587 kcal Electronic energy + Delta-G solvation = -31864.733253 eV Core-core repulsion = 27665.929824 eV Total energy + Delta-G solvation = -4198.803429 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.69905 -40.76689 -39.19892 -36.95983 -36.10770 -34.72493 -34.10997 -32.31709 -31.03989 -30.59017 -29.89423 -27.99257 -26.12563 -25.36451 -24.95171 -23.88451 -23.12027 -22.75192 -21.87267 -20.22333 -19.28561 -18.87332 -18.32611 -17.48943 -16.92357 -16.59467 -16.31500 -15.80379 -15.50598 -15.07968 -14.71293 -14.62131 -14.47106 -14.21941 -14.03608 -13.87160 -13.81895 -13.43139 -13.38827 -12.72331 -12.58317 -12.43991 -12.29828 -12.08925 -11.80227 -11.54236 -11.45382 -11.31009 -11.20283 -10.94889 -10.87964 -10.84177 -10.81382 -10.55513 -10.25868 -10.10177 -9.73729 -9.69811 -9.39963 -9.15439 -8.89701 -8.42975 -6.96586 -5.82519 -3.14733 1.26798 2.25549 2.29330 2.54536 2.77717 3.37075 3.41895 3.43513 3.87101 3.97256 4.11792 4.29811 4.38130 4.42071 4.55566 4.68484 4.80159 4.83522 4.93998 5.01388 5.03935 5.10532 5.12504 5.16213 5.22090 5.34368 5.37958 5.47134 5.49133 5.54343 5.60994 5.72886 5.77922 5.80898 5.89314 5.91629 6.03219 6.16147 6.27372 6.35315 6.40854 6.54879 6.82230 7.08822 7.23607 7.42926 7.72114 7.91930 7.99302 8.19829 8.98022 9.64841 10.48770 11.34889 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011250 B = 0.003310 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.181411 B = 8457.324175 C = 9950.584815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.004 4.004 3 Si 0.912 3.088 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.223 4.223 8 H 0.080 0.920 9 N -0.600 5.600 10 C 0.100 3.900 11 C 0.052 3.948 12 C 0.181 3.819 13 C 0.088 3.912 14 N -0.608 5.608 15 C 0.526 3.474 16 O -0.541 6.541 17 C -0.105 4.105 18 H 0.106 0.894 19 C -0.098 4.098 20 C -0.035 4.035 21 C -0.013 4.013 22 N -0.257 5.257 23 N -0.089 5.089 24 N -0.381 5.381 25 H 0.449 0.551 26 C -0.010 4.010 27 C -0.035 4.035 28 C 0.078 3.922 29 C 0.045 3.955 30 O -0.335 6.335 31 H 0.254 0.746 32 H 0.038 0.962 33 H 0.046 0.954 34 H 0.086 0.914 35 H 0.043 0.957 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.074 0.926 45 H 0.097 0.903 46 H 0.054 0.946 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.778 -18.049 1.312 18.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.201 4.201 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.350 4.350 8 H 0.098 0.902 9 N -0.326 5.326 10 C -0.026 4.026 11 C 0.010 3.990 12 C 0.055 3.945 13 C -0.036 4.036 14 N -0.341 5.341 15 C 0.314 3.686 16 O -0.419 6.419 17 C -0.127 4.127 18 H 0.124 0.876 19 C -0.137 4.137 20 C -0.074 4.074 21 C -0.152 4.152 22 N -0.123 5.123 23 N -0.068 5.068 24 N -0.100 5.100 25 H 0.294 0.706 26 C -0.146 4.146 27 C -0.075 4.075 28 C -0.044 4.044 29 C -0.033 4.033 30 O -0.252 6.252 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.104 0.896 35 H 0.060 0.940 36 H 0.113 0.887 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.113 0.887 44 H 0.093 0.907 45 H 0.116 0.884 46 H 0.072 0.928 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.746 -18.253 2.479 18.797 hybrid contribution -0.078 1.078 -0.935 1.429 sum -3.825 -17.175 1.544 17.663 Atomic orbital electron populations 1.69779 1.05017 1.25485 1.56487 1.24748 0.95672 0.97494 1.02171 0.86120 0.78601 0.83345 0.77673 1.21461 1.21596 1.20674 1.18963 0.90223 0.81689 1.44139 0.90206 1.45697 1.01772 0.99064 1.86031 1.23052 0.95180 0.87445 0.96931 1.23759 0.97737 0.95363 0.82108 1.22213 0.89114 0.86757 0.96408 1.22604 0.99153 0.84078 0.97738 1.48324 1.63280 1.15411 1.07125 1.20331 0.76591 0.82443 0.89233 1.90685 1.48707 1.31333 1.71130 1.21386 0.96205 1.03060 0.92040 0.87631 1.21477 0.99108 0.99112 0.93988 1.20033 0.90284 1.03987 0.93143 1.21763 0.96749 1.06585 0.90138 1.74841 1.04108 1.16079 1.17270 1.78583 1.02874 1.20027 1.05286 1.44680 1.11368 1.48306 1.05633 0.70585 1.21714 0.89160 1.09136 0.94602 1.20066 0.97305 1.03689 0.86423 1.22293 1.02040 1.00277 0.79827 1.22907 0.96348 0.85184 0.98815 1.88065 1.78879 1.40584 1.17670 0.93550 0.94427 0.93566 0.89589 0.93974 0.88703 0.90267 0.90315 0.89744 0.89302 0.89124 0.89096 0.88741 0.90739 0.88443 0.92776 0.87986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.45 11.39 55.49 0.63 -25.81 16 2 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 3 Si 0.91 21.77 29.55 -169.99 -5.02 16.74 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 7 C -0.22 -6.10 10.70 -15.06 -0.16 -6.26 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 N -0.60 -14.68 3.70 -180.29 -0.67 -15.35 16 10 C 0.10 1.91 8.08 -3.17 -0.03 1.89 16 11 C 0.05 0.89 1.21 -90.32 -0.11 0.79 16 12 C 0.18 3.92 6.90 -3.20 -0.02 3.89 16 13 C 0.09 1.08 5.30 -3.47 -0.02 1.06 16 14 N -0.61 -7.20 3.04 -172.18 -0.52 -7.72 16 15 C 0.53 6.13 6.78 -10.98 -0.07 6.05 16 16 O -0.54 -7.77 15.75 5.56 0.09 -7.68 16 17 C -0.11 -0.97 1.65 -91.50 -0.15 -1.12 16 18 H 0.11 0.98 6.41 -51.93 -0.33 0.65 16 19 C -0.10 -0.87 4.59 -26.45 -0.12 -0.99 16 20 C -0.04 -0.31 6.30 -27.71 -0.17 -0.49 16 21 C -0.01 -0.14 7.11 -83.12 -0.59 -0.73 16 22 N -0.26 -3.44 12.40 33.16 0.41 -3.03 16 23 N -0.09 -1.08 13.40 60.35 0.81 -0.27 16 24 N -0.38 -3.27 6.97 33.39 0.23 -3.04 16 25 H 0.45 2.04 8.96 -190.07 -1.70 0.34 16 26 C -0.01 -0.10 7.15 -82.50 -0.59 -0.69 16 27 C -0.04 -0.26 5.48 -27.75 -0.15 -0.42 16 28 C 0.08 0.91 6.57 -3.59 -0.02 0.89 16 29 C 0.05 0.61 6.89 37.28 0.26 0.86 16 30 O -0.33 -5.99 10.52 -35.23 -0.37 -6.37 16 31 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.04 0.66 7.94 -51.92 -0.41 0.25 16 33 H 0.05 0.89 7.28 -51.93 -0.38 0.51 16 34 H 0.09 2.14 7.17 -51.93 -0.37 1.77 16 35 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 36 H 0.09 1.02 5.12 -51.93 -0.27 0.75 16 37 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 38 H 0.08 0.72 8.11 -51.93 -0.42 0.30 16 39 H 0.08 0.75 8.11 -51.93 -0.42 0.33 16 40 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.09 0.55 7.53 -51.93 -0.39 0.16 16 43 H 0.09 0.67 8.12 -51.92 -0.42 0.25 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.10 1.11 7.09 -51.93 -0.37 0.75 16 46 H 0.05 0.76 7.20 -51.93 -0.37 0.38 16 47 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 372.23 15.07 5.61 5.61 Total: -1.00 -35.16 372.23 -8.80 -43.96 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -7.94 Total: -1.57 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: -2.05 Total: 4.52 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: 0.89 Total: -55.22 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -0.28 Total: -14.04 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.16 -8.80 -43.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053507977.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.602 kcal (2) G-P(sol) polarization free energy of solvation -35.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds