Wall clock time and date at job start Wed Apr 1 2020 04:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99751 * 2 1 4 4 H 1.48503 * 109.47402 * 269.99620 * 3 2 1 5 5 H 1.48501 * 109.47317 * 30.00186 * 3 2 1 6 6 H 1.48503 * 109.46939 * 149.99784 * 3 2 1 7 7 C 1.38809 * 120.00229 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00562 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99782 * 359.97438 * 7 2 1 10 10 C 1.47667 * 134.45984 * 179.97438 * 9 7 2 11 11 C 1.53461 * 85.97996 * 204.30233 * 10 9 7 12 12 C 1.47669 * 134.46234 * 0.02562 * 9 7 2 13 13 C 1.52897 * 113.50316 * 222.32651 * 11 10 9 14 14 N 1.47644 * 108.14351 * 276.94961 * 13 11 10 15 15 C 1.34777 * 121.24729 * 131.60052 * 14 13 11 16 16 O 1.21277 * 119.99862 * 175.20901 * 15 14 13 17 17 C 1.50701 * 119.99864 * 355.21012 * 15 14 13 18 18 H 1.08999 * 109.45918 * 324.93804 * 17 15 14 19 19 C 1.53106 * 109.45486 * 204.99047 * 17 15 14 20 20 C 1.53429 * 109.57080 * 169.90511 * 19 17 15 21 21 C 1.50592 * 108.33436 * 49.82379 * 20 19 17 22 22 N 1.32915 * 129.16014 * 163.38470 * 21 20 19 23 23 N 1.29022 * 108.63025 * 180.21129 * 22 21 20 24 24 N 1.29107 * 110.26428 * 359.97438 * 23 22 21 25 25 H 0.96998 * 126.01035 * 179.91264 * 24 23 22 26 26 C 1.34398 * 107.98135 * 359.92741 * 24 23 22 27 27 C 1.50536 * 129.25320 * 180.15596 * 26 24 23 28 28 C 1.47119 * 117.70037 * 311.72350 * 14 13 11 29 29 C 1.53228 * 108.85927 * 52.14317 * 28 14 13 30 30 O 1.42487 * 113.77165 * 91.27682 * 11 10 9 31 31 H 0.96997 * 120.00467 * 0.02562 * 1 2 3 32 32 H 1.09008 * 113.79123 * 90.03650 * 10 9 7 33 33 H 1.08997 * 113.79385 * 318.56573 * 10 9 7 34 34 H 1.09000 * 113.79390 * 41.43368 * 12 9 7 35 35 H 1.08997 * 113.79048 * 269.96190 * 12 9 7 36 36 H 1.08992 * 109.74610 * 36.58320 * 13 11 10 37 37 H 1.09008 * 109.74404 * 157.25450 * 13 11 10 38 38 H 1.08997 * 109.45139 * 289.93842 * 19 17 15 39 39 H 1.09000 * 109.46008 * 49.87836 * 19 17 15 40 40 H 1.09001 * 109.70593 * 290.10748 * 20 19 17 41 41 H 1.09004 * 109.67988 * 169.52730 * 20 19 17 42 42 H 1.08998 * 109.69800 * 43.85845 * 27 26 24 43 43 H 1.09009 * 109.69235 * 283.27853 * 27 26 24 44 44 H 1.09001 * 109.59880 * 292.29732 * 28 14 13 45 45 H 1.09003 * 109.59869 * 171.99364 * 28 14 13 46 46 H 1.09002 * 109.49107 * 65.76392 * 29 28 14 47 47 H 1.08997 * 109.49393 * 185.83403 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 1.7212 -3.8107 0.0019 11 6 0.3477 -4.0811 -0.6269 12 6 -0.1043 -2.7568 0.0019 13 6 -0.3585 -5.3063 -0.0456 14 7 0.1612 -6.5055 -0.7324 15 6 0.5652 -7.5883 -0.0391 16 8 0.9062 -8.5925 -0.6274 17 6 0.5931 -7.5513 1.4672 18 1 0.8737 -6.5522 1.8007 19 6 1.6159 -8.5669 1.9835 20 6 1.8317 -8.3594 3.4883 21 6 0.4836 -8.3062 4.1573 22 7 0.1795 -8.4395 5.4443 23 7 -1.0990 -8.3298 5.5792 24 7 -1.6541 -8.1284 4.4311 25 1 -2.6037 -8.0147 4.2688 26 6 -0.6851 -8.1043 3.5002 27 6 -0.7977 -7.8998 2.0130 28 6 0.2259 -6.4778 -2.2019 29 6 0.9749 -5.2152 -2.6410 30 8 0.3556 -4.0676 -2.0517 31 1 -0.4851 0.8400 -0.0004 32 1 1.8392 -4.2341 0.9995 33 1 2.5589 -4.0344 -0.6586 34 1 -0.7169 -2.1432 -0.6586 35 1 -0.5299 -2.8664 0.9994 36 1 -0.1537 -5.3771 1.0226 37 1 -1.4330 -5.2244 -0.2098 38 1 1.2463 -9.5767 1.8055 39 1 2.5613 -8.4289 1.4588 40 1 2.3630 -7.4228 3.6577 41 1 2.4106 -9.1892 3.8939 42 1 -1.4893 -7.0832 1.8058 43 1 -1.1577 -8.8149 1.5426 44 1 -0.7839 -6.4649 -2.6122 45 1 0.7552 -7.3603 -2.5613 46 1 2.0131 -5.2761 -2.3145 47 1 0.9393 -5.1303 -3.7270 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053507977.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:33 Heat of formation + Delta-G solvation = 56.774130 kcal Electronic energy + Delta-G solvation = -31865.855037 eV Core-core repulsion = 27665.929824 eV Total energy + Delta-G solvation = -4199.925212 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.47037 -41.84699 -40.39945 -37.93901 -37.34330 -35.81416 -34.89339 -34.21863 -32.01828 -31.30413 -31.05286 -29.34512 -27.62143 -26.84397 -25.87216 -24.78268 -24.07278 -23.86578 -23.13908 -21.14049 -20.47254 -19.84772 -19.12152 -18.75633 -18.36177 -17.66642 -17.24089 -17.04414 -16.65607 -16.48994 -15.96988 -15.74373 -15.57402 -15.15903 -14.98443 -14.93271 -14.79425 -14.73113 -14.41470 -14.07627 -13.86410 -13.35173 -13.25466 -13.11173 -12.98192 -12.85414 -12.75936 -12.59232 -12.47507 -12.23167 -12.09966 -12.00805 -11.88756 -11.66980 -11.58156 -11.39384 -11.30873 -10.96467 -10.75658 -10.71279 -9.90777 -9.52870 -8.88776 -7.89212 -5.20832 0.53090 1.43602 1.46624 1.47810 1.48592 1.55917 1.75290 1.94128 2.47815 2.72719 3.12848 3.29471 3.34409 3.37571 3.55727 3.65839 3.73420 3.80883 3.86684 3.93745 3.97918 4.16406 4.23205 4.31878 4.36140 4.46127 4.50092 4.55440 4.59920 4.67646 4.73164 4.77909 4.79239 4.84390 4.91461 4.97146 5.00188 5.10838 5.20910 5.22527 5.28724 5.30016 5.38093 5.53217 5.95247 5.98620 6.30523 6.42720 6.93905 7.08121 7.39923 7.62173 8.54765 9.27466 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011250 B = 0.003310 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.181411 B = 8457.324175 C = 9950.584815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.060 4.060 3 Si 0.973 3.027 4 H -0.288 1.288 5 H -0.293 1.293 6 H -0.271 1.271 7 C -0.233 4.233 8 H 0.078 0.922 9 N -0.634 5.634 10 C 0.101 3.899 11 C 0.076 3.924 12 C 0.176 3.824 13 C 0.100 3.900 14 N -0.608 5.608 15 C 0.532 3.468 16 O -0.567 6.567 17 C -0.102 4.102 18 H 0.110 0.890 19 C -0.092 4.092 20 C -0.031 4.031 21 C -0.031 4.031 22 N -0.294 5.294 23 N -0.116 5.116 24 N -0.363 5.363 25 H 0.465 0.535 26 C 0.002 3.998 27 C -0.029 4.029 28 C 0.083 3.917 29 C 0.044 3.956 30 O -0.368 6.368 31 H 0.249 0.751 32 H 0.064 0.936 33 H 0.041 0.959 34 H 0.045 0.955 35 H 0.052 0.948 36 H 0.116 0.884 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.114 0.886 43 H 0.106 0.894 44 H 0.089 0.911 45 H 0.102 0.898 46 H 0.045 0.955 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.125 -19.381 1.066 19.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.254 4.254 3 Si 0.801 3.199 4 H -0.216 1.216 5 H -0.219 1.219 6 H -0.196 1.196 7 C -0.362 4.362 8 H 0.096 0.904 9 N -0.361 5.361 10 C -0.024 4.024 11 C 0.034 3.966 12 C 0.050 3.950 13 C -0.023 4.023 14 N -0.340 5.340 15 C 0.321 3.679 16 O -0.445 6.445 17 C -0.124 4.124 18 H 0.128 0.872 19 C -0.130 4.130 20 C -0.070 4.070 21 C -0.172 4.172 22 N -0.159 5.159 23 N -0.095 5.095 24 N -0.084 5.084 25 H 0.315 0.685 26 C -0.135 4.135 27 C -0.069 4.069 28 C -0.039 4.039 29 C -0.033 4.033 30 O -0.287 6.287 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.134 0.866 37 H 0.119 0.881 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.114 0.886 42 H 0.132 0.868 43 H 0.124 0.876 44 H 0.107 0.893 45 H 0.120 0.880 46 H 0.063 0.937 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.102 -19.626 2.247 20.176 hybrid contribution 0.071 1.435 -0.947 1.720 sum -4.031 -18.191 1.301 18.678 Atomic orbital electron populations 1.69953 1.06186 1.25565 1.58081 1.25495 0.96520 1.00449 1.02916 0.85169 0.77759 0.79561 0.77379 1.21559 1.21899 1.19557 1.19301 0.90605 0.83401 1.42856 0.90402 1.46060 1.03400 1.00287 1.86319 1.23254 0.96365 0.84621 0.98201 1.23280 0.96036 0.95270 0.82002 1.22151 0.87461 0.88829 0.96533 1.22475 0.99605 0.81848 0.98407 1.48333 1.63273 1.15213 1.07224 1.20614 0.75536 0.81757 0.89954 1.90687 1.49729 1.32279 1.71853 1.21389 0.97374 1.03399 0.90254 0.87214 1.21409 0.99017 0.98882 0.93739 1.20045 0.89616 1.04401 0.92958 1.22164 0.98204 1.06995 0.89794 1.74797 1.04832 1.17463 1.18818 1.78511 1.02815 1.21519 1.06658 1.44690 1.12283 1.46750 1.04722 0.68533 1.21897 0.88599 1.07728 0.95234 1.20129 0.96685 1.05172 0.84906 1.22257 1.02618 0.99148 0.79889 1.23105 0.95785 0.84670 0.99742 1.88010 1.79466 1.43109 1.18072 0.94233 0.91864 0.94085 0.93686 0.93006 0.86559 0.88148 0.90597 0.89883 0.89004 0.88622 0.86759 0.87625 0.89294 0.87967 0.93655 0.86080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.75 11.39 21.65 0.25 -55.50 16 2 C -0.06 -3.39 5.50 84.86 0.47 -2.92 16 3 Si 0.97 45.28 29.55 68.60 2.03 47.30 16 4 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.23 -12.90 10.70 84.03 0.90 -12.00 16 8 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 9 N -0.63 -31.09 3.70 -729.16 -2.70 -33.78 16 10 C 0.10 3.70 8.08 86.30 0.70 4.40 16 11 C 0.08 2.47 1.21 -10.50 -0.01 2.46 16 12 C 0.18 7.60 6.90 86.29 0.60 8.20 16 13 C 0.10 2.11 5.30 86.13 0.46 2.56 16 14 N -0.61 -12.31 3.04 -817.06 -2.48 -14.79 16 15 C 0.53 10.63 6.78 87.66 0.59 11.22 16 16 O -0.57 -14.68 15.75 -3.02 -0.05 -14.72 16 17 C -0.10 -1.54 1.65 -11.36 -0.02 -1.56 16 18 H 0.11 1.61 6.41 -2.39 -0.02 1.59 16 19 C -0.09 -1.41 4.59 30.77 0.14 -1.27 16 20 C -0.03 -0.50 6.30 29.96 0.19 -0.31 16 21 C -0.03 -0.63 7.11 41.75 0.30 -0.33 16 22 N -0.29 -7.65 12.40 -48.99 -0.61 -8.26 16 23 N -0.12 -2.71 13.40 37.02 0.50 -2.22 16 24 N -0.36 -5.42 6.97 -48.27 -0.34 -5.76 16 25 H 0.47 3.01 8.96 -219.68 -1.97 1.04 16 26 C 0.00 0.04 7.15 41.50 0.30 0.33 16 27 C -0.03 -0.33 5.48 29.94 0.16 -0.17 16 28 C 0.08 1.70 6.57 86.34 0.57 2.26 16 29 C 0.04 1.09 6.89 72.06 0.50 1.59 16 30 O -0.37 -12.81 10.52 -148.98 -1.57 -14.37 16 31 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 32 H 0.06 2.03 7.94 -2.38 -0.02 2.01 16 33 H 0.04 1.54 7.28 -2.39 -0.02 1.52 16 34 H 0.04 2.30 7.17 -2.39 -0.02 2.29 16 35 H 0.05 2.11 8.09 -2.39 -0.02 2.09 16 36 H 0.12 1.99 5.12 -2.39 -0.01 1.98 16 37 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 38 H 0.08 1.22 8.11 -2.39 -0.02 1.20 16 39 H 0.08 1.31 8.11 -2.39 -0.02 1.29 16 40 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 42 H 0.11 0.81 7.53 -2.39 -0.02 0.79 16 43 H 0.11 1.06 8.12 -2.38 -0.02 1.04 16 44 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.10 2.05 7.09 -2.39 -0.02 2.03 16 46 H 0.05 1.20 7.20 -2.39 -0.02 1.18 16 47 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -78.03 372.23 -0.09 -78.12 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -0.95 Total: 9.52 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: 5.83 Total: 14.47 kcal Atomic # 7 Polarization: -114.93 SS G_CDS: -5.39 Total: -120.32 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -1.61 Total: -29.10 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -78.03 -0.09 -78.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053507977.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.895 kcal (2) G-P(sol) polarization free energy of solvation -78.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds