Wall clock time and date at job start Wed Apr 1 2020 04:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00223 * 2 1 4 4 H 1.48500 * 109.46975 * 240.00214 * 3 2 1 5 5 H 1.48501 * 109.47028 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47067 * 119.99993 * 3 2 1 7 7 C 1.38816 * 119.99644 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99942 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00011 * 359.97438 * 7 2 1 10 10 C 1.47790 * 134.40165 * 179.97438 * 9 7 2 11 11 C 1.52882 * 85.78294 * 156.12745 * 10 9 7 12 12 C 1.47785 * 134.40364 * 0.02562 * 9 7 2 13 13 C 1.53472 * 115.59338 * 140.25343 * 11 10 9 14 14 C 1.54737 * 103.72398 * 152.75606 * 13 11 10 15 15 H 1.08993 * 110.50864 * 119.54472 * 14 13 11 16 16 N 1.46494 * 110.51007 * 242.11724 * 14 13 11 17 17 C 1.34775 * 120.00023 * 205.00193 * 16 14 13 18 18 O 1.21277 * 119.99895 * 359.97438 * 17 16 14 19 19 C 1.50707 * 120.00152 * 180.02562 * 17 16 14 20 20 H 1.09003 * 109.68863 * 60.53999 * 19 17 16 21 21 C 1.53432 * 109.68871 * 181.13381 * 19 17 16 22 22 C 1.53106 * 109.54968 * 169.42486 * 21 19 17 23 23 C 1.53426 * 109.57717 * 289.92905 * 22 21 19 24 24 C 1.50594 * 108.32963 * 49.82523 * 23 22 21 25 25 N 1.32912 * 129.16179 * 163.49475 * 24 23 22 26 26 N 1.29016 * 108.63559 * 180.11000 * 25 24 23 27 27 N 1.29104 * 110.25993 * 359.97026 * 26 25 24 28 28 H 0.97002 * 126.00356 * 179.97438 * 27 26 25 29 29 C 1.34392 * 107.98815 * 359.94817 * 27 26 25 30 30 C 1.54546 * 104.07325 * 0.76276 * 14 13 11 31 31 O 1.43249 * 115.85765 * 265.49987 * 11 10 9 32 32 H 0.97005 * 120.00056 * 359.97438 * 1 2 3 33 33 H 1.08999 * 113.82028 * 41.91279 * 10 9 7 34 34 H 1.08995 * 113.93260 * 270.35780 * 10 9 7 35 35 H 1.08994 * 113.82574 * 89.65324 * 12 9 7 36 36 H 1.09006 * 113.82228 * 318.08358 * 12 9 7 37 37 H 1.09003 * 110.57447 * 34.19420 * 13 11 10 38 38 H 1.09004 * 110.70336 * 271.37954 * 13 11 10 39 39 H 0.97005 * 120.00312 * 24.99958 * 16 14 13 40 40 H 1.08997 * 109.46306 * 49.39793 * 21 19 17 41 41 H 1.08998 * 109.45481 * 289.44310 * 21 19 17 42 42 H 1.09004 * 109.45536 * 169.90265 * 22 21 19 43 43 H 1.09002 * 109.45768 * 49.96612 * 22 21 19 44 44 H 1.09003 * 109.69175 * 169.53368 * 23 22 21 45 45 H 1.08994 * 109.69068 * 290.07367 * 23 22 21 46 46 H 1.09007 * 110.32979 * 95.25485 * 30 14 13 47 47 H 1.08996 * 110.33110 * 217.47926 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 1.7228 -3.8116 -0.0015 11 6 0.3501 -4.0784 0.6165 12 6 -0.1060 -2.7556 -0.0005 13 6 -0.3743 -5.3315 0.1065 14 6 -1.2798 -5.7405 1.2927 15 1 -2.3285 -5.7234 0.9962 16 7 -0.9091 -7.0686 1.7874 17 6 -1.8187 -7.8255 2.4324 18 8 -2.9440 -7.4069 2.6038 19 6 -1.4373 -9.1916 2.9418 20 1 -0.6253 -9.1010 3.6634 21 6 -2.6512 -9.8525 3.6081 22 6 -2.3434 -11.3261 3.8870 23 6 -2.2809 -12.0978 2.5624 24 6 -1.3754 -11.3491 1.6204 25 7 -0.7956 -11.7704 0.5010 26 7 -0.1002 -10.8023 0.0073 27 7 -0.1971 -9.7551 0.7561 28 1 0.2330 -8.8999 0.5990 29 6 -0.9990 -10.0577 1.7913 30 6 -1.0003 -4.6652 2.3670 31 8 0.3116 -4.1471 2.0468 32 1 -0.4850 0.8401 0.0004 33 1 2.5563 -4.0364 0.6639 34 1 1.8469 -4.2353 -0.9980 35 1 -0.5339 -2.8592 -0.9976 36 1 -0.7169 -2.1464 0.6656 37 1 0.3411 -6.1222 -0.1197 38 1 -0.9760 -5.0981 -0.7720 39 1 -0.0090 -7.4034 1.6506 40 1 -3.5132 -9.7807 2.9449 41 1 -2.8719 -9.3438 4.5465 42 1 -3.1273 -11.7480 4.5161 43 1 -1.3847 -11.4062 4.3994 44 1 -1.8827 -13.0972 2.7380 45 1 -3.2797 -12.1709 2.1324 46 1 -1.7450 -3.8711 2.3108 47 1 -0.9981 -5.1138 3.3603 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053908285.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:07 Heat of formation + Delta-G solvation = 75.157183 kcal Electronic energy + Delta-G solvation = -31050.801349 eV Core-core repulsion = 26851.673286 eV Total energy + Delta-G solvation = -4199.128063 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.94141 -40.69572 -39.59321 -37.28931 -36.24938 -34.84819 -34.12107 -32.15775 -31.40999 -30.54524 -30.24804 -28.19275 -26.00101 -25.31979 -24.95570 -23.67615 -23.16425 -22.33098 -21.39716 -21.05800 -20.00828 -19.13114 -18.73216 -17.59498 -16.87843 -16.78241 -16.48412 -15.86412 -15.57507 -15.29824 -15.03960 -14.75096 -14.39030 -14.34793 -14.16960 -13.96057 -13.81936 -13.51601 -13.10787 -12.84778 -12.67895 -12.06314 -12.02331 -11.82315 -11.78471 -11.70064 -11.59357 -11.51029 -11.39358 -11.16822 -11.09062 -10.87995 -10.78160 -10.66421 -10.48681 -10.21363 -9.86820 -9.63804 -9.50746 -9.30445 -8.93081 -8.84692 -6.94085 -5.79604 -3.11962 1.05234 2.00462 2.12898 2.26690 2.67904 3.38320 3.42119 3.43507 3.75718 3.87329 4.10287 4.11118 4.24624 4.40180 4.42012 4.48216 4.70612 4.75932 4.81937 4.84617 4.94389 4.99531 5.10584 5.13323 5.18336 5.34473 5.41728 5.47277 5.50194 5.56607 5.58392 5.64013 5.79110 5.80915 5.85061 5.86359 5.86574 6.17298 6.23378 6.31846 6.36902 6.49006 6.82691 6.98495 7.12605 7.40415 7.57083 7.70769 7.93919 8.02798 9.00600 9.67321 10.52602 11.37679 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.025785 B = 0.002273 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.642753 B =12314.495367 C =12987.562671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.914 3.086 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.223 4.223 8 H 0.080 0.920 9 N -0.604 5.604 10 C 0.130 3.870 11 C 0.055 3.945 12 C 0.152 3.848 13 C -0.147 4.147 14 C 0.110 3.890 15 H 0.107 0.893 16 N -0.722 5.722 17 C 0.516 3.484 18 O -0.517 6.517 19 C -0.032 4.032 20 H 0.122 0.878 21 C -0.098 4.098 22 C -0.120 4.120 23 C -0.037 4.037 24 C -0.003 4.003 25 N -0.257 5.257 26 N -0.077 5.077 27 N -0.380 5.380 28 H 0.444 0.556 29 C -0.014 4.014 30 C 0.039 3.961 31 O -0.336 6.336 32 H 0.254 0.746 33 H 0.052 0.948 34 H 0.047 0.953 35 H 0.036 0.964 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.391 0.609 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.072 0.928 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.085 -23.759 7.503 25.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.350 4.350 8 H 0.098 0.902 9 N -0.330 5.330 10 C 0.004 3.996 11 C 0.014 3.986 12 C 0.027 3.973 13 C -0.186 4.186 14 C 0.005 3.995 15 H 0.125 0.875 16 N -0.375 5.375 17 C 0.301 3.699 18 O -0.392 6.392 19 C -0.055 4.055 20 H 0.139 0.861 21 C -0.136 4.136 22 C -0.158 4.158 23 C -0.076 4.076 24 C -0.142 4.142 25 N -0.122 5.122 26 N -0.056 5.056 27 N -0.100 5.100 28 H 0.291 0.709 29 C -0.150 4.150 30 C -0.039 4.039 31 O -0.254 6.254 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.111 0.889 39 H 0.225 0.775 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.089 0.911 44 H 0.106 0.894 45 H 0.105 0.895 46 H 0.091 0.909 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.126 -23.733 6.469 25.127 hybrid contribution 0.777 1.901 0.371 2.087 sum -4.349 -21.832 6.840 23.288 Atomic orbital electron populations 1.69793 1.05046 1.25520 1.56548 1.24776 0.95695 0.97555 1.02325 0.86180 0.78481 0.83037 0.77940 1.21162 1.21525 1.21039 1.18941 0.90224 0.81808 1.44039 0.90225 1.45820 1.01959 0.99097 1.86105 1.22499 0.93669 0.86918 0.96550 1.23822 0.98781 0.94223 0.81800 1.22612 0.88789 0.88849 0.97084 1.23104 0.98628 0.99036 0.97830 1.22568 1.01027 0.81361 0.94502 0.87482 1.46304 1.14123 1.18205 1.58836 1.20425 0.85404 0.86144 0.77974 1.90752 1.19963 1.73082 1.55361 1.20093 1.01652 0.90284 0.93507 0.86080 1.21487 0.95577 0.94883 1.01683 1.21686 1.03088 0.94391 0.96611 1.20047 0.97442 0.98200 0.91888 1.21746 1.03192 0.92444 0.96866 1.74880 1.08077 1.20920 1.08368 1.78637 1.19817 0.90011 1.17087 1.44865 1.33721 1.14525 1.16918 0.70874 1.21447 1.00982 0.97789 0.94780 1.23795 0.87155 0.94887 0.98101 1.89028 1.31017 1.85249 1.20102 0.93560 0.92998 0.93542 0.94646 0.90303 0.90678 0.88905 0.77473 0.89845 0.89503 0.89791 0.91099 0.89381 0.89491 0.90938 0.89417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.31 11.40 55.49 0.63 -26.68 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.22 -6.27 10.70 -15.06 -0.16 -6.43 16 8 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 9 N -0.60 -15.35 3.71 -183.56 -0.68 -16.03 16 10 C 0.13 2.54 8.47 -3.40 -0.03 2.51 16 11 C 0.05 0.97 1.28 -90.64 -0.12 0.86 16 12 C 0.15 3.46 7.00 -3.38 -0.02 3.44 16 13 C -0.15 -1.82 6.24 -25.57 -0.16 -1.98 16 14 C 0.11 1.29 3.49 -66.21 -0.23 1.06 16 15 H 0.11 1.32 7.55 -51.93 -0.39 0.93 16 16 N -0.72 -6.51 4.65 -52.14 -0.24 -6.75 16 17 C 0.52 5.01 7.14 -10.98 -0.08 4.93 16 18 O -0.52 -6.84 15.49 5.56 0.09 -6.76 16 19 C -0.03 -0.22 2.91 -92.78 -0.27 -0.49 16 20 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 21 C -0.10 -0.60 4.66 -26.45 -0.12 -0.73 16 22 C -0.12 -0.53 5.90 -26.46 -0.16 -0.68 16 23 C -0.04 -0.22 6.30 -27.71 -0.17 -0.40 16 24 C 0.00 -0.02 7.11 -83.12 -0.59 -0.61 16 25 N -0.26 -3.06 12.40 33.16 0.41 -2.65 16 26 N -0.08 -0.88 13.40 60.35 0.81 -0.07 16 27 N -0.38 -3.22 6.76 33.39 0.23 -3.00 16 28 H 0.44 2.67 6.82 -190.07 -1.30 1.38 16 29 C -0.01 -0.12 6.38 -82.50 -0.53 -0.64 16 30 C 0.04 0.56 7.37 37.97 0.28 0.84 16 31 O -0.34 -6.16 11.44 -35.23 -0.40 -6.56 16 32 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.04 0.80 7.96 -51.93 -0.41 0.39 16 36 H 0.08 2.04 7.20 -51.93 -0.37 1.66 16 37 H 0.07 0.74 7.69 -51.93 -0.40 0.34 16 38 H 0.09 1.12 7.84 -51.93 -0.41 0.72 16 39 H 0.39 2.63 6.43 -40.82 -0.26 2.37 16 40 H 0.08 0.65 7.75 -51.93 -0.40 0.24 16 41 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 43 H 0.07 0.28 8.12 -51.93 -0.42 -0.15 16 44 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 47 H 0.09 1.16 8.06 -51.93 -0.42 0.74 16 LS Contribution 377.23 15.07 5.68 5.68 Total: -1.00 -35.94 377.23 -8.67 -44.61 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -7.71 Total: -0.34 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -2.46 Total: 1.37 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: 1.15 Total: -55.18 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -0.32 Total: -13.32 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.94 -8.67 -44.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053908285.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.763 kcal (2) G-P(sol) polarization free energy of solvation -35.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds