Wall clock time and date at job start Wed Apr 1 2020 04:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00223 * 2 1 4 4 H 1.48500 * 109.46975 * 240.00214 * 3 2 1 5 5 H 1.48501 * 109.47028 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47067 * 119.99993 * 3 2 1 7 7 C 1.38816 * 119.99644 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99942 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00011 * 359.97438 * 7 2 1 10 10 C 1.47790 * 134.40165 * 179.97438 * 9 7 2 11 11 C 1.52882 * 85.78294 * 156.12745 * 10 9 7 12 12 C 1.47785 * 134.40364 * 0.02562 * 9 7 2 13 13 C 1.53472 * 115.59338 * 140.25343 * 11 10 9 14 14 C 1.54737 * 103.72398 * 152.75606 * 13 11 10 15 15 H 1.08993 * 110.50864 * 119.54472 * 14 13 11 16 16 N 1.46494 * 110.51007 * 242.11724 * 14 13 11 17 17 C 1.34775 * 120.00023 * 205.00193 * 16 14 13 18 18 O 1.21277 * 119.99895 * 359.97438 * 17 16 14 19 19 C 1.50707 * 120.00152 * 180.02562 * 17 16 14 20 20 H 1.09003 * 109.68863 * 60.53999 * 19 17 16 21 21 C 1.53432 * 109.68871 * 181.13381 * 19 17 16 22 22 C 1.53106 * 109.54968 * 169.42486 * 21 19 17 23 23 C 1.53426 * 109.57717 * 289.92905 * 22 21 19 24 24 C 1.50594 * 108.32963 * 49.82523 * 23 22 21 25 25 N 1.32912 * 129.16179 * 163.49475 * 24 23 22 26 26 N 1.29016 * 108.63559 * 180.11000 * 25 24 23 27 27 N 1.29104 * 110.25993 * 359.97026 * 26 25 24 28 28 H 0.97002 * 126.00356 * 179.97438 * 27 26 25 29 29 C 1.34392 * 107.98815 * 359.94817 * 27 26 25 30 30 C 1.54546 * 104.07325 * 0.76276 * 14 13 11 31 31 O 1.43249 * 115.85765 * 265.49987 * 11 10 9 32 32 H 0.97005 * 120.00056 * 359.97438 * 1 2 3 33 33 H 1.08999 * 113.82028 * 41.91279 * 10 9 7 34 34 H 1.08995 * 113.93260 * 270.35780 * 10 9 7 35 35 H 1.08994 * 113.82574 * 89.65324 * 12 9 7 36 36 H 1.09006 * 113.82228 * 318.08358 * 12 9 7 37 37 H 1.09003 * 110.57447 * 34.19420 * 13 11 10 38 38 H 1.09004 * 110.70336 * 271.37954 * 13 11 10 39 39 H 0.97005 * 120.00312 * 24.99958 * 16 14 13 40 40 H 1.08997 * 109.46306 * 49.39793 * 21 19 17 41 41 H 1.08998 * 109.45481 * 289.44310 * 21 19 17 42 42 H 1.09004 * 109.45536 * 169.90265 * 22 21 19 43 43 H 1.09002 * 109.45768 * 49.96612 * 22 21 19 44 44 H 1.09003 * 109.69175 * 169.53368 * 23 22 21 45 45 H 1.08994 * 109.69068 * 290.07367 * 23 22 21 46 46 H 1.09007 * 110.32979 * 95.25485 * 30 14 13 47 47 H 1.08996 * 110.33110 * 217.47926 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 1.7228 -3.8116 -0.0015 11 6 0.3501 -4.0784 0.6165 12 6 -0.1060 -2.7556 -0.0005 13 6 -0.3743 -5.3315 0.1065 14 6 -1.2798 -5.7405 1.2927 15 1 -2.3285 -5.7234 0.9962 16 7 -0.9091 -7.0686 1.7874 17 6 -1.8187 -7.8255 2.4324 18 8 -2.9440 -7.4069 2.6038 19 6 -1.4373 -9.1916 2.9418 20 1 -0.6253 -9.1010 3.6634 21 6 -2.6512 -9.8525 3.6081 22 6 -2.3434 -11.3261 3.8870 23 6 -2.2809 -12.0978 2.5624 24 6 -1.3754 -11.3491 1.6204 25 7 -0.7956 -11.7704 0.5010 26 7 -0.1002 -10.8023 0.0073 27 7 -0.1971 -9.7551 0.7561 28 1 0.2330 -8.8999 0.5990 29 6 -0.9990 -10.0577 1.7913 30 6 -1.0003 -4.6652 2.3670 31 8 0.3116 -4.1471 2.0468 32 1 -0.4850 0.8401 0.0004 33 1 2.5563 -4.0364 0.6639 34 1 1.8469 -4.2353 -0.9980 35 1 -0.5339 -2.8592 -0.9976 36 1 -0.7169 -2.1464 0.6656 37 1 0.3411 -6.1222 -0.1197 38 1 -0.9760 -5.0981 -0.7720 39 1 -0.0090 -7.4034 1.6506 40 1 -3.5132 -9.7807 2.9449 41 1 -2.8719 -9.3438 4.5465 42 1 -3.1273 -11.7480 4.5161 43 1 -1.3847 -11.4062 4.3994 44 1 -1.8827 -13.0972 2.7380 45 1 -3.2797 -12.1709 2.1324 46 1 -1.7450 -3.8711 2.3108 47 1 -0.9981 -5.1138 3.3603 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053908285.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:06 Heat of formation + Delta-G solvation = 47.561234 kcal Electronic energy + Delta-G solvation = -31051.998000 eV Core-core repulsion = 26851.673286 eV Total energy + Delta-G solvation = -4200.324714 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.62954 -41.78235 -40.70929 -38.07665 -37.51731 -35.83152 -34.92466 -34.15919 -32.23693 -31.17878 -31.15382 -29.75785 -27.62922 -26.69131 -25.86913 -24.44441 -24.00117 -23.63351 -22.44726 -21.98517 -20.62494 -20.53614 -19.43106 -18.76906 -18.28446 -17.78381 -17.30016 -17.10216 -16.79851 -16.57480 -16.12880 -16.01940 -15.45103 -15.21003 -15.02072 -14.83862 -14.77158 -14.60042 -14.53720 -14.34510 -13.40004 -13.23771 -13.16395 -13.00867 -12.86933 -12.73868 -12.71697 -12.58122 -12.44145 -12.35785 -12.24257 -12.08103 -11.98651 -11.70576 -11.63861 -11.37082 -11.34756 -11.03988 -10.94156 -10.73181 -10.15715 -9.97095 -8.94924 -7.92452 -5.25176 0.37751 1.27362 1.42551 1.42631 1.46413 1.52318 1.61532 1.92188 2.44988 2.80190 3.17230 3.24288 3.26522 3.36882 3.46475 3.54483 3.64502 3.71552 3.78081 3.92133 4.01067 4.18596 4.23339 4.28901 4.34476 4.45944 4.53448 4.59586 4.65290 4.70011 4.71368 4.82858 4.86696 4.91071 4.99206 5.00849 5.13264 5.14225 5.20405 5.22189 5.30900 5.34274 5.47492 5.48583 5.74369 5.90370 6.06871 6.24770 6.89237 6.95926 7.31063 7.58615 8.52020 9.24286 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.025785 B = 0.002273 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.642753 B =12314.495367 C =12987.562671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.070 4.070 3 Si 0.979 3.021 4 H -0.275 1.275 5 H -0.294 1.294 6 H -0.278 1.278 7 C -0.234 4.234 8 H 0.083 0.917 9 N -0.641 5.641 10 C 0.130 3.870 11 C 0.076 3.924 12 C 0.145 3.855 13 C -0.134 4.134 14 C 0.125 3.875 15 H 0.104 0.896 16 N -0.711 5.711 17 C 0.517 3.483 18 O -0.553 6.553 19 C -0.022 4.022 20 H 0.153 0.847 21 C -0.098 4.098 22 C -0.110 4.110 23 C -0.039 4.039 24 C -0.012 4.012 25 N -0.290 5.290 26 N -0.106 5.106 27 N -0.368 5.368 28 H 0.454 0.546 29 C -0.008 4.008 30 C 0.035 3.965 31 O -0.361 6.361 32 H 0.248 0.752 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.034 0.966 36 H 0.036 0.964 37 H 0.113 0.887 38 H 0.100 0.900 39 H 0.405 0.595 40 H 0.064 0.936 41 H 0.095 0.905 42 H 0.103 0.897 43 H 0.082 0.918 44 H 0.096 0.904 45 H 0.088 0.912 46 H 0.055 0.945 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.203 -25.855 8.369 27.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.263 4.263 3 Si 0.807 3.193 4 H -0.201 1.201 5 H -0.221 1.221 6 H -0.204 1.204 7 C -0.362 4.362 8 H 0.101 0.899 9 N -0.367 5.367 10 C 0.006 3.994 11 C 0.035 3.965 12 C 0.019 3.981 13 C -0.173 4.173 14 C 0.019 3.981 15 H 0.122 0.878 16 N -0.365 5.365 17 C 0.303 3.697 18 O -0.430 6.430 19 C -0.045 4.045 20 H 0.171 0.829 21 C -0.137 4.137 22 C -0.148 4.148 23 C -0.078 4.078 24 C -0.153 4.153 25 N -0.155 5.155 26 N -0.084 5.084 27 N -0.091 5.091 28 H 0.303 0.697 29 C -0.144 4.144 30 C -0.042 4.042 31 O -0.280 6.280 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.132 0.868 38 H 0.119 0.881 39 H 0.243 0.757 40 H 0.083 0.917 41 H 0.113 0.887 42 H 0.122 0.878 43 H 0.101 0.899 44 H 0.115 0.885 45 H 0.107 0.893 46 H 0.073 0.927 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.193 -25.885 7.318 27.224 hybrid contribution 0.487 2.529 0.150 2.580 sum -3.706 -23.356 7.468 24.799 Atomic orbital electron populations 1.69998 1.06460 1.25603 1.58333 1.25636 0.96598 1.00941 1.03090 0.85148 0.77160 0.78731 0.78286 1.20060 1.22066 1.20389 1.19365 0.90816 0.83431 1.42585 0.89885 1.46252 1.03428 1.00677 1.86368 1.22746 0.94800 0.83686 0.98208 1.23364 0.97436 0.93957 0.81728 1.22587 0.87397 0.91480 0.96594 1.23017 0.99076 0.97248 0.97918 1.22217 1.00767 0.81875 0.93196 0.87792 1.46146 1.14932 1.16988 1.58428 1.20902 0.84732 0.86904 0.77115 1.90752 1.21538 1.74047 1.56645 1.20191 1.02988 0.87975 0.93374 0.82925 1.21521 0.94495 0.96186 1.01488 1.21666 1.04468 0.92773 0.95883 1.20216 0.96866 0.98643 0.92083 1.22316 1.03166 0.93236 0.96547 1.74847 1.09131 1.21758 1.09737 1.78580 1.20921 0.90805 1.18108 1.44856 1.33266 1.14443 1.16487 0.69689 1.21641 1.00326 0.97685 0.94770 1.23916 0.85205 0.95289 0.99819 1.88999 1.32856 1.85720 1.20417 0.94357 0.92500 0.90518 0.94830 0.94569 0.86845 0.88106 0.75741 0.91710 0.88678 0.87848 0.89893 0.88511 0.89342 0.92715 0.88038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.64 11.40 21.65 0.25 -58.39 16 2 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 3 Si 0.98 46.43 29.55 68.60 2.03 48.46 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 7 C -0.23 -13.31 10.70 84.03 0.90 -12.41 16 8 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16 9 N -0.64 -32.85 3.71 -740.93 -2.75 -35.59 16 10 C 0.13 4.87 8.47 86.09 0.73 5.60 16 11 C 0.08 2.61 1.28 -10.64 -0.01 2.60 16 12 C 0.15 6.75 7.00 86.11 0.60 7.36 16 13 C -0.13 -2.95 6.24 31.35 0.20 -2.76 16 14 C 0.12 2.68 3.49 46.11 0.16 2.84 16 15 H 0.10 2.41 7.55 -2.39 -0.02 2.39 16 16 N -0.71 -10.69 4.65 -437.26 -2.03 -12.73 16 17 C 0.52 8.71 7.14 87.66 0.63 9.34 16 18 O -0.55 -13.75 15.49 -3.02 -0.05 -13.80 16 19 C -0.02 -0.23 2.91 -12.19 -0.04 -0.27 16 20 H 0.15 0.74 8.14 -2.39 -0.02 0.72 16 21 C -0.10 -0.95 4.66 30.77 0.14 -0.81 16 22 C -0.11 -0.61 5.90 30.77 0.18 -0.43 16 23 C -0.04 -0.39 6.30 29.96 0.19 -0.20 16 24 C -0.01 -0.20 7.11 41.75 0.30 0.10 16 25 N -0.29 -6.62 12.40 -48.99 -0.61 -7.23 16 26 N -0.11 -2.29 13.40 37.02 0.50 -1.79 16 27 N -0.37 -5.39 6.76 -48.27 -0.33 -5.72 16 28 H 0.45 4.06 6.82 -219.68 -1.50 2.57 16 29 C -0.01 -0.11 6.38 41.50 0.26 0.16 16 30 C 0.04 1.00 7.37 72.51 0.53 1.53 16 31 O -0.36 -12.99 11.44 -148.98 -1.70 -14.69 16 32 H 0.25 14.82 8.31 -92.70 -0.77 14.04 16 33 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.03 1.55 7.96 -2.39 -0.02 1.54 16 36 H 0.04 1.97 7.20 -2.38 -0.02 1.95 16 37 H 0.11 1.69 7.69 -2.39 -0.02 1.67 16 38 H 0.10 2.17 7.84 -2.38 -0.02 2.15 16 39 H 0.41 3.86 6.43 -92.70 -0.60 3.27 16 40 H 0.06 0.90 7.75 -2.39 -0.02 0.88 16 41 H 0.09 0.79 8.14 -2.39 -0.02 0.78 16 42 H 0.10 0.23 8.14 -2.38 -0.02 0.21 16 43 H 0.08 0.31 8.12 -2.39 -0.02 0.29 16 44 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 47 H 0.10 2.54 8.06 -2.39 -0.02 2.52 16 Total: -1.00 -81.78 377.23 -0.52 -82.31 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -1.07 Total: 10.12 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: 5.24 Total: 9.05 kcal Atomic # 7 Polarization: -116.48 SS G_CDS: -4.97 Total: -121.45 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -1.75 Total: -28.49 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -81.78 -0.52 -82.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053908285.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.867 kcal (2) G-P(sol) polarization free energy of solvation -81.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds