Wall clock time and date at job start Wed Apr 1 2020 04:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86802 * 119.99524 * 2 1 4 4 H 1.48502 * 109.46950 * 274.98889 * 3 2 1 5 5 H 1.48505 * 109.47438 * 34.98896 * 3 2 1 6 6 H 1.48500 * 109.47165 * 154.98865 * 3 2 1 7 7 C 1.38809 * 120.00354 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00185 * 185.08632 * 7 2 1 9 9 N 1.36934 * 119.99953 * 5.08759 * 7 2 1 10 10 C 1.47779 * 134.40932 * 173.50665 * 9 7 2 11 11 C 1.52934 * 85.80742 * 156.10086 * 10 9 7 12 12 C 1.47775 * 134.41027 * 353.54051 * 9 7 2 13 13 C 1.54265 * 115.18051 * 266.69800 * 11 10 9 14 14 C 1.55480 * 100.66730 * 194.62643 * 13 11 10 15 15 H 1.08994 * 110.82891 * 274.55897 * 14 13 11 16 16 N 1.46502 * 110.82597 * 151.19122 * 14 13 11 17 17 C 1.34779 * 119.99647 * 157.71880 * 16 14 13 18 18 O 1.21281 * 120.00449 * 0.02562 * 17 16 14 19 19 C 1.50700 * 119.99576 * 180.02562 * 17 16 14 20 20 H 1.08998 * 109.72670 * 60.56485 * 19 17 16 21 21 C 1.53438 * 109.69163 * 181.13274 * 19 17 16 22 22 C 1.53241 * 109.55265 * 169.46199 * 21 19 17 23 23 C 1.53422 * 109.51677 * 289.93328 * 22 21 19 24 24 C 1.50601 * 108.36376 * 49.82939 * 23 22 21 25 25 N 1.32913 * 129.16015 * 163.41353 * 24 23 22 26 26 N 1.29019 * 108.63448 * 180.12518 * 25 24 23 27 27 N 1.29106 * 110.25902 * 359.97438 * 26 25 24 28 28 H 0.97004 * 126.00876 * 179.97438 * 27 26 25 29 29 C 1.34389 * 107.98701 * 359.94203 * 27 26 25 30 30 C 1.54471 * 102.54598 * 32.87534 * 14 13 11 31 31 O 1.42546 * 116.18611 * 141.02952 * 11 10 9 32 32 H 0.96991 * 120.00275 * 359.97438 * 1 2 3 33 33 H 1.09003 * 113.81350 * 41.87916 * 10 9 7 34 34 H 1.08997 * 113.82087 * 270.32743 * 10 9 7 35 35 H 1.09002 * 113.81882 * 89.67369 * 12 9 7 36 36 H 1.08999 * 113.81311 * 318.11698 * 12 9 7 37 37 H 1.08999 * 111.33096 * 76.74013 * 13 11 10 38 38 H 1.08991 * 111.08798 * 312.41931 * 13 11 10 39 39 H 0.96997 * 120.00120 * 337.71877 * 16 14 13 40 40 H 1.08994 * 109.45632 * 289.45790 * 21 19 17 41 41 H 1.09000 * 109.45958 * 49.42668 * 21 19 17 42 42 H 1.08993 * 109.49758 * 169.91491 * 22 21 19 43 43 H 1.08997 * 109.47985 * 49.93613 * 22 21 19 44 44 H 1.09004 * 109.69267 * 290.10568 * 23 22 21 45 45 H 1.09002 * 109.69414 * 169.55975 * 23 22 21 46 46 H 1.09002 * 109.82971 * 98.24342 * 30 14 13 47 47 H 1.08997 * 109.83266 * 219.21597 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3921 2.1074 -1.3948 5 1 1.5042 2.6201 0.8028 6 1 3.5965 1.4122 0.5919 7 6 2.0104 -1.2021 -0.0005 8 1 3.0872 -1.2039 0.0824 9 7 1.3298 -2.3856 -0.1062 10 6 1.7316 -3.7995 -0.2587 11 6 0.3729 -4.1353 0.3577 12 6 -0.0999 -2.7593 -0.1140 13 6 0.3770 -4.3327 1.8877 14 6 -1.0047 -5.0154 2.0934 15 1 -1.7953 -4.2706 2.1838 16 7 -0.9825 -5.8931 3.2662 17 6 -2.1343 -6.2203 3.8849 18 8 -3.1892 -5.7884 3.4706 19 6 -2.1114 -7.1227 5.0916 20 1 -1.5207 -6.6628 5.8838 21 6 -3.5441 -7.3607 5.5866 22 6 -3.5450 -8.4755 6.6380 23 6 -3.2419 -9.8186 5.9612 24 6 -2.0152 -9.6517 5.1036 25 7 -1.2234 -10.5825 4.5811 26 7 -0.2851 -9.9991 3.9149 27 7 -0.4249 -8.7170 3.9751 28 1 0.1532 -8.0601 3.5566 29 6 -1.5124 -8.4526 4.7191 30 6 -1.1697 -5.8368 0.7957 31 8 -0.3090 -5.2579 -0.1961 32 1 -0.4850 0.8399 0.0004 33 1 2.5799 -4.0855 0.3632 34 1 1.8354 -4.1183 -1.2958 35 1 -0.5481 -2.7645 -1.1076 36 1 -0.6989 -2.2233 0.6222 37 1 0.4255 -3.3776 2.4106 38 1 1.1902 -4.9897 2.1961 39 1 -0.1389 -6.2388 3.5973 40 1 -3.9320 -6.4437 6.0300 41 1 -4.1746 -7.6529 4.7468 42 1 -4.5228 -8.5229 7.1171 43 1 -2.7829 -8.2674 7.3890 44 1 -4.0868 -10.1156 5.3397 45 1 -3.0588 -10.5793 6.7201 46 1 -0.8829 -6.8730 0.9750 47 1 -2.2053 -5.7916 0.4586 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053908286.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:10 Heat of formation + Delta-G solvation = 72.174623 kcal Electronic energy + Delta-G solvation = -31124.018747 eV Core-core repulsion = 26924.761350 eV Total energy + Delta-G solvation = -4199.257397 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.93918 -40.65003 -39.59832 -37.27768 -36.35738 -34.99772 -34.20127 -32.17792 -31.38532 -30.53483 -30.09087 -28.21733 -25.94366 -25.26551 -25.02165 -23.68605 -23.15499 -22.18773 -21.75388 -21.11816 -20.00664 -18.96090 -18.66232 -17.64549 -16.91035 -16.72679 -16.54767 -15.90469 -15.58549 -15.27963 -14.95681 -14.73208 -14.62838 -14.30258 -14.19969 -13.87081 -13.80341 -13.63011 -13.03558 -12.78508 -12.63453 -12.10079 -12.06180 -11.83327 -11.78050 -11.70165 -11.59953 -11.50041 -11.25661 -11.09674 -11.02466 -10.91169 -10.84382 -10.76918 -10.46562 -10.28192 -10.07480 -9.64624 -9.43988 -9.30273 -8.90224 -8.86695 -6.99230 -5.87625 -3.20255 1.05214 2.00480 2.13289 2.27358 2.64181 3.33334 3.38457 3.40787 3.75986 3.86944 4.04525 4.12745 4.23006 4.39870 4.41569 4.49523 4.69768 4.77483 4.82674 4.92296 4.95407 5.00297 5.10915 5.11568 5.15716 5.22041 5.42882 5.45664 5.48529 5.57918 5.59177 5.67888 5.79040 5.81687 5.87071 5.92146 6.09850 6.17324 6.28875 6.31582 6.49346 6.56930 6.90020 6.96945 7.11177 7.40938 7.57306 7.71598 7.86410 8.03021 8.94092 9.60175 10.47681 11.29955 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020296 B = 0.002408 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.230662 B =11622.839017 C =12213.341283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.005 4.005 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.226 4.226 8 H 0.082 0.918 9 N -0.604 5.604 10 C 0.129 3.871 11 C 0.054 3.946 12 C 0.160 3.840 13 C -0.122 4.122 14 C 0.110 3.890 15 H 0.113 0.887 16 N -0.723 5.723 17 C 0.516 3.484 18 O -0.512 6.512 19 C -0.031 4.031 20 H 0.122 0.878 21 C -0.099 4.099 22 C -0.119 4.119 23 C -0.037 4.037 24 C -0.002 4.002 25 N -0.256 5.256 26 N -0.076 5.076 27 N -0.380 5.380 28 H 0.444 0.556 29 C -0.015 4.015 30 C 0.046 3.954 31 O -0.366 6.366 32 H 0.255 0.745 33 H 0.049 0.951 34 H 0.045 0.955 35 H 0.038 0.962 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.075 0.925 39 H 0.390 0.610 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.070 0.930 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.060 0.940 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.546 -17.476 15.009 23.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.202 4.202 3 Si 0.741 3.259 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.353 4.353 8 H 0.100 0.900 9 N -0.333 5.333 10 C 0.003 3.997 11 C 0.013 3.987 12 C 0.035 3.965 13 C -0.160 4.160 14 C 0.005 3.995 15 H 0.131 0.869 16 N -0.376 5.376 17 C 0.301 3.699 18 O -0.385 6.385 19 C -0.054 4.054 20 H 0.139 0.861 21 C -0.137 4.137 22 C -0.157 4.157 23 C -0.076 4.076 24 C -0.142 4.142 25 N -0.122 5.122 26 N -0.055 5.055 27 N -0.101 5.101 28 H 0.291 0.709 29 C -0.151 4.151 30 C -0.032 4.032 31 O -0.283 6.283 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.090 0.910 37 H 0.120 0.880 38 H 0.094 0.906 39 H 0.225 0.775 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.089 0.911 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.078 0.922 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.486 -18.173 13.994 23.583 hybrid contribution 0.847 2.176 0.144 2.340 sum -4.639 -15.996 14.137 21.846 Atomic orbital electron populations 1.69831 1.05073 1.25616 1.55753 1.24845 0.95700 0.97626 1.02010 0.86117 0.78697 0.83409 0.77632 1.21499 1.21645 1.20509 1.18962 0.90729 0.81599 1.43985 0.89994 1.45718 1.02175 1.00527 1.84851 1.22552 0.92935 0.86261 0.97952 1.24292 0.95641 0.87527 0.91190 1.22500 0.88265 0.86839 0.98933 1.23034 0.94175 1.02162 0.96588 1.22774 1.00559 0.92115 0.84036 0.86900 1.46124 1.08589 1.51401 1.31481 1.20441 0.84134 0.81206 0.84150 1.90771 1.29899 1.53005 1.64860 1.20082 1.00184 0.88462 0.96722 0.86058 1.21521 0.92236 1.00132 0.99815 1.21705 1.03111 0.93198 0.97725 1.20054 0.91918 0.98621 0.97015 1.21747 1.00568 0.88104 1.03734 1.74883 1.01501 1.26923 1.08912 1.78640 1.19720 0.87839 1.19323 1.44862 1.20869 1.08633 1.35714 0.70922 1.21448 0.92830 0.98390 1.02384 1.23425 0.95504 0.96270 0.87997 1.88340 1.58586 1.45460 1.35939 0.93455 0.93307 0.93784 0.94435 0.90975 0.87969 0.90625 0.77548 0.89451 0.89792 0.89765 0.91108 0.89463 0.89379 0.92217 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.52 11.52 55.49 0.64 -25.88 16 2 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 3 Si 0.91 21.55 29.56 -169.99 -5.02 16.53 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.23 -6.11 10.69 -15.06 -0.16 -6.27 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 N -0.60 -14.98 3.69 -183.19 -0.68 -15.66 16 10 C 0.13 2.60 8.49 -3.38 -0.03 2.57 16 11 C 0.05 0.99 1.48 -90.17 -0.13 0.86 16 12 C 0.16 3.72 6.89 -3.37 -0.02 3.70 16 13 C -0.12 -1.76 6.05 -24.75 -0.15 -1.91 16 14 C 0.11 1.42 3.33 -65.84 -0.22 1.20 16 15 H 0.11 1.70 7.63 -51.93 -0.40 1.30 16 16 N -0.72 -6.73 4.69 -51.79 -0.24 -6.98 16 17 C 0.52 5.26 7.15 -10.98 -0.08 5.18 16 18 O -0.51 -7.20 15.53 5.56 0.09 -7.11 16 19 C -0.03 -0.22 2.91 -92.78 -0.27 -0.49 16 20 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 21 C -0.10 -0.64 4.66 -26.38 -0.12 -0.76 16 22 C -0.12 -0.55 5.91 -26.39 -0.16 -0.70 16 23 C -0.04 -0.23 6.30 -27.71 -0.17 -0.40 16 24 C 0.00 -0.02 7.11 -83.12 -0.59 -0.61 16 25 N -0.26 -3.08 12.40 33.17 0.41 -2.67 16 26 N -0.08 -0.88 13.40 60.35 0.81 -0.07 16 27 N -0.38 -3.26 6.76 33.39 0.23 -3.03 16 28 H 0.44 2.70 6.82 -190.07 -1.30 1.40 16 29 C -0.01 -0.12 6.38 -82.50 -0.53 -0.65 16 30 C 0.05 0.66 7.58 37.93 0.29 0.94 16 31 O -0.37 -6.43 11.17 -35.23 -0.39 -6.82 16 32 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.05 0.89 8.11 -51.93 -0.42 0.47 16 34 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.07 1.80 7.36 -51.93 -0.38 1.42 16 37 H 0.10 1.68 8.05 -51.93 -0.42 1.26 16 38 H 0.08 0.89 7.98 -51.93 -0.41 0.47 16 39 H 0.39 2.48 6.56 -40.82 -0.27 2.21 16 40 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.68 7.75 -51.93 -0.40 0.28 16 42 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.07 0.28 8.12 -51.93 -0.42 -0.14 16 44 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.06 0.74 8.02 -51.93 -0.42 0.33 16 47 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 378.12 15.07 5.70 5.70 Total: -1.00 -34.44 378.12 -8.67 -43.11 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -7.76 Total: 0.45 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -2.44 Total: 2.44 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: 1.17 Total: -54.29 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.31 Total: -13.93 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.44 -8.67 -43.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053908286.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.288 kcal (2) G-P(sol) polarization free energy of solvation -34.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds