Wall clock time and date at job start Wed Apr 1 2020 04:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86802 * 119.99524 * 2 1 4 4 H 1.48502 * 109.46950 * 274.98889 * 3 2 1 5 5 H 1.48505 * 109.47438 * 34.98896 * 3 2 1 6 6 H 1.48500 * 109.47165 * 154.98865 * 3 2 1 7 7 C 1.38809 * 120.00354 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00185 * 185.08632 * 7 2 1 9 9 N 1.36934 * 119.99953 * 5.08759 * 7 2 1 10 10 C 1.47779 * 134.40932 * 173.50665 * 9 7 2 11 11 C 1.52934 * 85.80742 * 156.10086 * 10 9 7 12 12 C 1.47775 * 134.41027 * 353.54051 * 9 7 2 13 13 C 1.54265 * 115.18051 * 266.69800 * 11 10 9 14 14 C 1.55480 * 100.66730 * 194.62643 * 13 11 10 15 15 H 1.08994 * 110.82891 * 274.55897 * 14 13 11 16 16 N 1.46502 * 110.82597 * 151.19122 * 14 13 11 17 17 C 1.34779 * 119.99647 * 157.71880 * 16 14 13 18 18 O 1.21281 * 120.00449 * 0.02562 * 17 16 14 19 19 C 1.50700 * 119.99576 * 180.02562 * 17 16 14 20 20 H 1.08998 * 109.72670 * 60.56485 * 19 17 16 21 21 C 1.53438 * 109.69163 * 181.13274 * 19 17 16 22 22 C 1.53241 * 109.55265 * 169.46199 * 21 19 17 23 23 C 1.53422 * 109.51677 * 289.93328 * 22 21 19 24 24 C 1.50601 * 108.36376 * 49.82939 * 23 22 21 25 25 N 1.32913 * 129.16015 * 163.41353 * 24 23 22 26 26 N 1.29019 * 108.63448 * 180.12518 * 25 24 23 27 27 N 1.29106 * 110.25902 * 359.97438 * 26 25 24 28 28 H 0.97004 * 126.00876 * 179.97438 * 27 26 25 29 29 C 1.34389 * 107.98701 * 359.94203 * 27 26 25 30 30 C 1.54471 * 102.54598 * 32.87534 * 14 13 11 31 31 O 1.42546 * 116.18611 * 141.02952 * 11 10 9 32 32 H 0.96991 * 120.00275 * 359.97438 * 1 2 3 33 33 H 1.09003 * 113.81350 * 41.87916 * 10 9 7 34 34 H 1.08997 * 113.82087 * 270.32743 * 10 9 7 35 35 H 1.09002 * 113.81882 * 89.67369 * 12 9 7 36 36 H 1.08999 * 113.81311 * 318.11698 * 12 9 7 37 37 H 1.08999 * 111.33096 * 76.74013 * 13 11 10 38 38 H 1.08991 * 111.08798 * 312.41931 * 13 11 10 39 39 H 0.96997 * 120.00120 * 337.71877 * 16 14 13 40 40 H 1.08994 * 109.45632 * 289.45790 * 21 19 17 41 41 H 1.09000 * 109.45958 * 49.42668 * 21 19 17 42 42 H 1.08993 * 109.49758 * 169.91491 * 22 21 19 43 43 H 1.08997 * 109.47985 * 49.93613 * 22 21 19 44 44 H 1.09004 * 109.69267 * 290.10568 * 23 22 21 45 45 H 1.09002 * 109.69414 * 169.55975 * 23 22 21 46 46 H 1.09002 * 109.82971 * 98.24342 * 30 14 13 47 47 H 1.08997 * 109.83266 * 219.21597 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3921 2.1074 -1.3948 5 1 1.5042 2.6201 0.8028 6 1 3.5965 1.4122 0.5919 7 6 2.0104 -1.2021 -0.0005 8 1 3.0872 -1.2039 0.0824 9 7 1.3298 -2.3856 -0.1062 10 6 1.7316 -3.7995 -0.2587 11 6 0.3729 -4.1353 0.3577 12 6 -0.0999 -2.7593 -0.1140 13 6 0.3770 -4.3327 1.8877 14 6 -1.0047 -5.0154 2.0934 15 1 -1.7953 -4.2706 2.1838 16 7 -0.9825 -5.8931 3.2662 17 6 -2.1343 -6.2203 3.8849 18 8 -3.1892 -5.7884 3.4706 19 6 -2.1114 -7.1227 5.0916 20 1 -1.5207 -6.6628 5.8838 21 6 -3.5441 -7.3607 5.5866 22 6 -3.5450 -8.4755 6.6380 23 6 -3.2419 -9.8186 5.9612 24 6 -2.0152 -9.6517 5.1036 25 7 -1.2234 -10.5825 4.5811 26 7 -0.2851 -9.9991 3.9149 27 7 -0.4249 -8.7170 3.9751 28 1 0.1532 -8.0601 3.5566 29 6 -1.5124 -8.4526 4.7191 30 6 -1.1697 -5.8368 0.7957 31 8 -0.3090 -5.2579 -0.1961 32 1 -0.4850 0.8399 0.0004 33 1 2.5799 -4.0855 0.3632 34 1 1.8354 -4.1183 -1.2958 35 1 -0.5481 -2.7645 -1.1076 36 1 -0.6989 -2.2233 0.6222 37 1 0.4255 -3.3776 2.4106 38 1 1.1902 -4.9897 2.1961 39 1 -0.1389 -6.2388 3.5973 40 1 -3.9320 -6.4437 6.0300 41 1 -4.1746 -7.6529 4.7468 42 1 -4.5228 -8.5229 7.1171 43 1 -2.7829 -8.2674 7.3890 44 1 -4.0868 -10.1156 5.3397 45 1 -3.0588 -10.5793 6.7201 46 1 -0.8829 -6.8730 0.9750 47 1 -2.2053 -5.7916 0.4586 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053908286.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:09 Heat of formation + Delta-G solvation = 46.151014 kcal Electronic energy + Delta-G solvation = -31125.147215 eV Core-core repulsion = 26924.761350 eV Total energy + Delta-G solvation = -4200.385865 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.64405 -41.79386 -40.77158 -38.16269 -37.62406 -36.03577 -34.98585 -34.17431 -32.20534 -31.16733 -31.06181 -29.85942 -27.56881 -26.78067 -25.88938 -24.45231 -23.96465 -23.73390 -22.70518 -22.10983 -20.56705 -20.45862 -19.43470 -18.78819 -18.41960 -17.78012 -17.37404 -17.23547 -16.65688 -16.58849 -16.43373 -15.79176 -15.61736 -15.46717 -14.89939 -14.84454 -14.70910 -14.59320 -14.47482 -14.21592 -13.72805 -13.45031 -13.17751 -12.94985 -12.89827 -12.75620 -12.67442 -12.65679 -12.47305 -12.40632 -12.25703 -12.03138 -11.99344 -11.84535 -11.66769 -11.51193 -11.38281 -11.12000 -10.90470 -10.45201 -10.37293 -9.98685 -8.99810 -7.95773 -5.30014 0.35928 1.23602 1.40904 1.44940 1.47371 1.55927 1.57990 1.82735 2.41023 2.77002 3.10922 3.15896 3.22575 3.30183 3.46216 3.53448 3.62405 3.67616 3.74436 3.90652 3.94472 3.95238 4.16723 4.27620 4.32842 4.44722 4.53571 4.58306 4.60418 4.69813 4.74990 4.80803 4.88431 4.96244 4.98282 4.99997 5.08073 5.12348 5.17181 5.19834 5.22776 5.33410 5.45985 5.46656 5.72520 5.83022 6.09691 6.18800 6.85560 6.92083 7.29837 7.55117 8.48746 9.21894 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020296 B = 0.002408 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.230662 B =11622.839017 C =12213.341283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.065 4.065 3 Si 0.979 3.021 4 H -0.291 1.291 5 H -0.295 1.295 6 H -0.262 1.262 7 C -0.233 4.233 8 H 0.092 0.908 9 N -0.628 5.628 10 C 0.129 3.871 11 C 0.076 3.924 12 C 0.154 3.846 13 C -0.110 4.110 14 C 0.125 3.875 15 H 0.088 0.912 16 N -0.708 5.708 17 C 0.516 3.484 18 O -0.553 6.553 19 C -0.019 4.019 20 H 0.157 0.843 21 C -0.100 4.100 22 C -0.109 4.109 23 C -0.039 4.039 24 C -0.010 4.010 25 N -0.289 5.289 26 N -0.105 5.105 27 N -0.369 5.369 28 H 0.454 0.546 29 C -0.008 4.008 30 C 0.044 3.956 31 O -0.378 6.378 32 H 0.249 0.751 33 H 0.080 0.920 34 H 0.042 0.958 35 H 0.006 0.994 36 H 0.045 0.955 37 H 0.083 0.917 38 H 0.117 0.883 39 H 0.409 0.591 40 H 0.094 0.906 41 H 0.063 0.937 42 H 0.103 0.897 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.098 0.902 46 H 0.086 0.914 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.257 -18.589 17.293 25.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.259 4.259 3 Si 0.807 3.193 4 H -0.219 1.219 5 H -0.221 1.221 6 H -0.186 1.186 7 C -0.361 4.361 8 H 0.109 0.891 9 N -0.357 5.357 10 C 0.004 3.996 11 C 0.035 3.965 12 C 0.028 3.972 13 C -0.147 4.147 14 C 0.019 3.981 15 H 0.106 0.894 16 N -0.363 5.363 17 C 0.303 3.697 18 O -0.429 6.429 19 C -0.043 4.043 20 H 0.175 0.825 21 C -0.138 4.138 22 C -0.147 4.147 23 C -0.078 4.078 24 C -0.151 4.151 25 N -0.154 5.154 26 N -0.083 5.083 27 N -0.091 5.091 28 H 0.303 0.697 29 C -0.145 4.145 30 C -0.034 4.034 31 O -0.296 6.296 32 H 0.058 0.942 33 H 0.098 0.902 34 H 0.060 0.940 35 H 0.024 0.976 36 H 0.064 0.936 37 H 0.102 0.898 38 H 0.135 0.865 39 H 0.247 0.753 40 H 0.113 0.887 41 H 0.082 0.918 42 H 0.121 0.879 43 H 0.103 0.897 44 H 0.106 0.894 45 H 0.116 0.884 46 H 0.104 0.896 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.133 -19.342 16.285 25.620 hybrid contribution 0.389 2.469 -0.624 2.576 sum -3.744 -16.874 15.661 23.324 Atomic orbital electron populations 1.70028 1.06631 1.25795 1.57576 1.25696 0.96512 1.01037 1.02610 0.85059 0.78111 0.79038 0.77129 1.21877 1.22131 1.18577 1.19398 0.91402 0.82713 1.42545 0.89053 1.46017 1.02926 1.01865 1.84876 1.22693 0.94824 0.83514 0.98534 1.23806 0.93751 0.85363 0.93571 1.22383 0.87660 0.90404 0.96797 1.22932 0.96321 1.02360 0.93129 1.22317 0.98937 0.91891 0.84954 0.89409 1.45904 1.09636 1.50525 1.30233 1.21015 0.83396 0.80852 0.84477 1.90770 1.31461 1.54647 1.66029 1.20173 1.01242 0.87024 0.95814 0.82529 1.21559 0.91342 1.01217 0.99731 1.21683 1.04704 0.91204 0.97096 1.20223 0.90622 1.00028 0.96969 1.22308 1.01047 0.87967 1.03776 1.74853 1.02409 1.28209 1.09925 1.78585 1.20406 0.88948 1.20381 1.44851 1.20869 1.08179 1.35193 0.69720 1.21619 0.92422 0.98625 1.01824 1.23582 0.94621 0.97458 0.87734 1.88320 1.59030 1.44729 1.37507 0.94199 0.90230 0.94046 0.97606 0.93620 0.89803 0.86517 0.75309 0.88743 0.91835 0.87866 0.89708 0.89417 0.88387 0.89585 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.05 11.52 21.65 0.25 -56.80 16 2 C -0.07 -3.65 5.50 84.86 0.47 -3.18 16 3 Si 0.98 44.69 29.56 68.60 2.03 46.72 16 4 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 5 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 6 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 7 C -0.23 -12.63 10.69 84.03 0.90 -11.73 16 8 H 0.09 4.66 7.83 -2.91 -0.02 4.63 16 9 N -0.63 -31.45 3.69 -739.62 -2.73 -34.18 16 10 C 0.13 5.04 8.49 86.11 0.73 5.78 16 11 C 0.08 2.74 1.48 -10.35 -0.02 2.73 16 12 C 0.15 7.44 6.89 86.12 0.59 8.03 16 13 C -0.11 -2.96 6.05 31.88 0.19 -2.77 16 14 C 0.12 3.07 3.33 46.34 0.15 3.23 16 15 H 0.09 2.68 7.63 -2.39 -0.02 2.66 16 16 N -0.71 -11.40 4.69 -436.14 -2.05 -13.45 16 17 C 0.52 9.48 7.15 87.66 0.63 10.10 16 18 O -0.55 -15.19 15.53 -3.03 -0.05 -15.23 16 19 C -0.02 -0.21 2.91 -12.19 -0.04 -0.25 16 20 H 0.16 0.73 8.14 -2.39 -0.02 0.71 16 21 C -0.10 -1.05 4.66 30.82 0.14 -0.91 16 22 C -0.11 -0.65 5.91 30.82 0.18 -0.47 16 23 C -0.04 -0.40 6.30 29.96 0.19 -0.21 16 24 C -0.01 -0.18 7.11 41.75 0.30 0.12 16 25 N -0.29 -6.64 12.40 -48.98 -0.61 -7.25 16 26 N -0.10 -2.28 13.40 37.02 0.50 -1.78 16 27 N -0.37 -5.45 6.76 -48.27 -0.33 -5.77 16 28 H 0.45 4.11 6.82 -219.68 -1.50 2.61 16 29 C -0.01 -0.12 6.38 41.50 0.26 0.14 16 30 C 0.04 1.19 7.58 72.48 0.55 1.73 16 31 O -0.38 -12.97 11.17 -148.98 -1.66 -14.63 16 32 H 0.25 14.54 8.31 -92.72 -0.77 13.77 16 33 H 0.08 2.64 8.11 -2.39 -0.02 2.62 16 34 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.05 2.42 7.36 -2.39 -0.02 2.40 16 37 H 0.08 2.67 8.05 -2.39 -0.02 2.65 16 38 H 0.12 2.23 7.98 -2.39 -0.02 2.21 16 39 H 0.41 3.62 6.56 -92.71 -0.61 3.01 16 40 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.06 0.95 7.75 -2.39 -0.02 0.94 16 42 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 43 H 0.08 0.32 8.12 -2.39 -0.02 0.31 16 44 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.09 1.90 8.02 -2.39 -0.02 1.89 16 47 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -78.37 378.12 -0.49 -78.86 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -1.08 Total: 11.16 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: 5.24 Total: 12.35 kcal Atomic # 7 Polarization: -114.27 SS G_CDS: -4.96 Total: -119.23 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: -1.71 Total: -29.86 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -78.37 -0.49 -78.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053908286.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.014 kcal (2) G-P(sol) polarization free energy of solvation -78.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds