Wall clock time and date at job start Wed Apr 1 2020 04:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 120.00153 * 2 1 4 4 H 1.48495 * 109.47490 * 240.00284 * 3 2 1 5 5 H 1.48505 * 109.46887 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47012 * 119.99908 * 3 2 1 7 7 C 1.38815 * 120.00302 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00335 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99554 * 359.97438 * 7 2 1 10 10 C 1.47768 * 134.40682 * 180.02562 * 9 7 2 11 11 C 1.52938 * 85.80860 * 156.09544 * 10 9 7 12 12 C 1.47774 * 134.40928 * 0.02829 * 9 7 2 13 13 C 1.54001 * 115.15214 * 266.50597 * 11 10 9 14 14 C 1.55491 * 100.77781 * 194.48859 * 13 11 10 15 15 H 1.08996 * 110.99817 * 274.81517 * 14 13 11 16 16 N 1.46498 * 110.82480 * 151.33293 * 14 13 11 17 17 C 1.34774 * 120.00060 * 160.59719 * 16 14 13 18 18 O 1.21283 * 119.99814 * 359.97438 * 17 16 14 19 19 C 1.50707 * 120.00118 * 180.02562 * 17 16 14 20 20 H 1.08996 * 109.68563 * 299.44817 * 19 17 16 21 21 C 1.53430 * 109.69925 * 178.87520 * 19 17 16 22 22 C 1.53106 * 109.55813 * 190.57827 * 21 19 17 23 23 C 1.53426 * 109.57717 * 70.05709 * 22 21 19 24 24 C 1.50592 * 108.33467 * 310.18566 * 23 22 21 25 25 N 1.32914 * 129.16107 * 196.52730 * 24 23 22 26 26 N 1.29017 * 108.63496 * 179.86729 * 25 24 23 27 27 N 1.29110 * 110.26030 * 0.02761 * 26 25 24 28 28 H 0.96996 * 126.00532 * 180.02562 * 27 26 25 29 29 C 1.34399 * 107.98304 * 0.04795 * 27 26 25 30 30 C 1.54466 * 102.37072 * 33.11437 * 14 13 11 31 31 O 1.42546 * 116.18789 * 141.03018 * 11 10 9 32 32 H 0.96998 * 119.99938 * 359.97438 * 1 2 3 33 33 H 1.09005 * 113.81863 * 41.87388 * 10 9 7 34 34 H 1.09003 * 113.81881 * 270.31807 * 10 9 7 35 35 H 1.08994 * 113.81959 * 89.67829 * 12 9 7 36 36 H 1.08999 * 113.81990 * 318.11796 * 12 9 7 37 37 H 1.08997 * 111.15906 * 76.61033 * 13 11 10 38 38 H 1.09000 * 111.15574 * 312.36085 * 13 11 10 39 39 H 0.97005 * 120.00423 * 340.59570 * 16 14 13 40 40 H 1.09001 * 109.46030 * 70.55483 * 21 19 17 41 41 H 1.08992 * 109.45657 * 310.60311 * 21 19 17 42 42 H 1.09004 * 109.45536 * 310.03069 * 22 21 19 43 43 H 1.09002 * 109.45768 * 190.09416 * 22 21 19 44 44 H 1.08999 * 109.68851 * 69.89822 * 23 22 21 45 45 H 1.09004 * 109.69220 * 190.42987 * 23 22 21 46 46 H 1.08998 * 109.83069 * 98.14141 * 30 14 13 47 47 H 1.08996 * 109.82923 * 219.12232 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 1.7228 -3.8114 -0.0005 11 6 0.3496 -4.0785 0.6175 12 6 -0.1057 -2.7557 -0.0006 13 6 0.3223 -4.1244 2.1566 14 6 -1.0689 -4.7736 2.4035 15 1 -1.8571 -4.0208 2.4011 16 7 -1.0761 -5.5280 3.6593 17 6 -2.2457 -5.8333 4.2553 18 8 -3.2922 -5.4830 3.7522 19 6 -2.2532 -6.6089 5.5474 20 1 -1.7852 -7.5814 5.3946 21 6 -3.6977 -6.7994 6.0280 22 6 -3.6943 -7.3486 7.4572 23 6 -3.2052 -6.2624 8.4241 24 6 -1.9238 -5.6869 7.8811 25 7 -1.0032 -4.9555 8.5009 26 7 -0.0644 -4.6764 7.6611 27 7 -0.3275 -5.1942 6.5080 28 1 0.2241 -5.1260 5.7131 29 6 -1.5003 -5.8437 6.6027 30 6 -1.2113 -5.7217 1.1924 31 8 -0.3266 -5.2492 0.1658 32 1 -0.4850 0.8400 0.0004 33 1 2.5563 -4.0358 0.6651 34 1 1.8464 -4.2339 -0.9977 35 1 -0.5333 -2.8599 -0.9977 36 1 -0.7168 -2.1462 0.6651 37 1 0.3693 -3.1216 2.5810 38 1 1.1239 -4.7522 2.5457 39 1 -0.2391 -5.8079 4.0618 40 1 -4.2096 -7.5021 5.3703 41 1 -4.2162 -5.8409 6.0087 42 1 -3.0294 -8.2106 7.5133 43 1 -4.7046 -7.6514 7.7323 44 1 -3.9561 -5.4764 8.5037 45 1 -3.0252 -6.6991 9.4065 46 1 -0.9340 -6.7354 1.4818 47 1 -2.2392 -5.7072 0.8303 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053908287.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:13 Heat of formation + Delta-G solvation = 72.673481 kcal Electronic energy + Delta-G solvation = -31175.612077 eV Core-core repulsion = 26976.376312 eV Total energy + Delta-G solvation = -4199.235765 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.88903 -40.64491 -39.59356 -37.26380 -36.34652 -34.98670 -34.15975 -32.15947 -31.36309 -30.50401 -30.07935 -28.20556 -25.93492 -25.25239 -25.01497 -23.63378 -23.11859 -22.19867 -21.74882 -21.06727 -19.97771 -18.89674 -18.70691 -17.58323 -16.92449 -16.79269 -16.43267 -15.83408 -15.62981 -15.27466 -14.94061 -14.74123 -14.58776 -14.29671 -14.15719 -13.91327 -13.79209 -13.55133 -13.02412 -12.75150 -12.65894 -12.12886 -11.98627 -11.80084 -11.75567 -11.69300 -11.57385 -11.47617 -11.24126 -11.06321 -10.99600 -10.91923 -10.81556 -10.72843 -10.44737 -10.27135 -10.08320 -9.63825 -9.43559 -9.26132 -8.89461 -8.85526 -6.99496 -5.84716 -3.18470 1.10024 2.03651 2.18471 2.30687 2.65171 3.35313 3.39486 3.41289 3.79914 3.89038 4.06711 4.13074 4.26453 4.40811 4.43578 4.48186 4.71494 4.78404 4.85061 4.95334 4.97984 5.00924 5.12596 5.14903 5.18102 5.24112 5.44580 5.46693 5.49834 5.59300 5.62212 5.69964 5.81495 5.84539 5.88725 5.92385 6.09541 6.18294 6.29084 6.37121 6.48394 6.57614 6.90955 6.97827 7.12780 7.41673 7.58042 7.72555 7.88125 8.08459 8.95636 9.61872 10.48226 11.32141 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013783 B = 0.002748 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.979775 B =10187.600737 C =11305.218469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.226 4.226 8 H 0.081 0.919 9 N -0.604 5.604 10 C 0.130 3.870 11 C 0.056 3.944 12 C 0.157 3.843 13 C -0.124 4.124 14 C 0.110 3.890 15 H 0.110 0.890 16 N -0.723 5.723 17 C 0.516 3.484 18 O -0.512 6.512 19 C -0.030 4.030 20 H 0.121 0.879 21 C -0.099 4.099 22 C -0.119 4.119 23 C -0.037 4.037 24 C -0.002 4.002 25 N -0.257 5.257 26 N -0.074 5.074 27 N -0.379 5.379 28 H 0.444 0.556 29 C -0.017 4.017 30 C 0.047 3.953 31 O -0.367 6.367 32 H 0.256 0.744 33 H 0.049 0.951 34 H 0.044 0.956 35 H 0.036 0.964 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.076 0.924 39 H 0.390 0.610 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.064 0.936 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.149 -19.131 14.242 24.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.353 4.353 8 H 0.099 0.901 9 N -0.333 5.333 10 C 0.004 3.996 11 C 0.016 3.984 12 C 0.032 3.968 13 C -0.162 4.162 14 C 0.006 3.994 15 H 0.128 0.872 16 N -0.376 5.376 17 C 0.300 3.700 18 O -0.385 6.385 19 C -0.053 4.053 20 H 0.138 0.862 21 C -0.137 4.137 22 C -0.157 4.157 23 C -0.076 4.076 24 C -0.142 4.142 25 N -0.123 5.123 26 N -0.053 5.053 27 N -0.099 5.099 28 H 0.291 0.709 29 C -0.153 4.153 30 C -0.031 4.031 31 O -0.285 6.285 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.094 0.906 37 H 0.119 0.881 38 H 0.095 0.905 39 H 0.225 0.775 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.089 0.911 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.083 0.917 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.922 -17.741 14.617 23.737 hybrid contribution 0.729 0.378 -1.062 1.342 sum -5.194 -17.363 13.555 22.631 Atomic orbital electron populations 1.69803 1.05032 1.25695 1.56003 1.24804 0.95693 0.97605 1.02088 0.86186 0.78503 0.82986 0.77990 1.21073 1.21481 1.21002 1.18917 0.90208 0.81503 1.44677 0.90081 1.45718 1.02172 0.99117 1.86250 1.22552 0.92881 0.86404 0.97812 1.24185 0.95666 0.86549 0.92009 1.22550 0.88371 0.87939 0.97984 1.23010 0.94084 1.02713 0.96416 1.22765 1.00306 0.93840 0.82516 0.87172 1.46133 1.08033 1.57819 1.25627 1.20450 0.84051 0.79887 0.85591 1.90770 1.31068 1.51658 1.65054 1.20069 0.98437 0.98023 0.88809 0.86164 1.21496 0.91895 1.03893 0.96427 1.21679 1.02517 0.97840 0.93661 1.20050 0.90439 0.97959 0.99171 1.21739 0.99507 1.02112 0.90803 1.74888 0.99931 1.13192 1.24255 1.78656 1.20646 1.17870 0.88143 1.44861 1.16595 1.35475 1.13016 0.70877 1.21434 0.90508 1.04718 0.98612 1.23430 0.95058 0.96837 0.87800 1.88328 1.57494 1.43964 1.38687 0.93421 0.93297 0.93792 0.94587 0.90608 0.88062 0.90547 0.77547 0.89515 0.89763 0.91147 0.89798 0.89452 0.89382 0.91742 0.90918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.80 11.40 55.49 0.63 -26.16 16 2 C 0.00 -0.14 5.50 -17.43 -0.10 -0.23 16 3 Si 0.91 21.82 29.55 -169.99 -5.02 16.80 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.23 -6.17 10.70 -15.06 -0.16 -6.33 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.60 -15.06 3.69 -183.23 -0.68 -15.74 16 10 C 0.13 2.61 8.49 -3.38 -0.03 2.58 16 11 C 0.06 1.04 1.47 -90.31 -0.13 0.90 16 12 C 0.16 3.67 6.98 -3.38 -0.02 3.65 16 13 C -0.12 -1.82 6.02 -24.89 -0.15 -1.97 16 14 C 0.11 1.44 3.29 -65.84 -0.22 1.22 16 15 H 0.11 1.70 7.71 -51.93 -0.40 1.30 16 16 N -0.72 -6.80 4.70 -51.78 -0.24 -7.04 16 17 C 0.52 5.29 7.14 -10.98 -0.08 5.21 16 18 O -0.51 -7.23 15.57 5.55 0.09 -7.14 16 19 C -0.03 -0.21 2.91 -92.78 -0.27 -0.48 16 20 H 0.12 0.53 8.14 -51.93 -0.42 0.10 16 21 C -0.10 -0.65 4.66 -26.45 -0.12 -0.77 16 22 C -0.12 -0.56 5.90 -26.46 -0.16 -0.72 16 23 C -0.04 -0.25 6.30 -27.71 -0.17 -0.42 16 24 C 0.00 -0.02 7.11 -83.12 -0.59 -0.61 16 25 N -0.26 -3.31 12.40 33.16 0.41 -2.90 16 26 N -0.07 -0.93 13.40 60.35 0.81 -0.12 16 27 N -0.38 -3.56 6.76 33.39 0.23 -3.33 16 28 H 0.44 3.05 6.82 -190.08 -1.30 1.75 16 29 C -0.02 -0.15 6.38 -82.50 -0.53 -0.68 16 30 C 0.05 0.65 7.57 37.93 0.29 0.93 16 31 O -0.37 -6.37 11.17 -35.23 -0.39 -6.76 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.05 0.89 8.11 -51.93 -0.42 0.47 16 34 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 1.92 7.16 -51.93 -0.37 1.55 16 37 H 0.10 1.71 8.05 -51.93 -0.42 1.29 16 38 H 0.08 0.90 7.98 -51.93 -0.41 0.49 16 39 H 0.39 2.51 6.54 -40.82 -0.27 2.24 16 40 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.71 7.75 -51.93 -0.40 0.31 16 42 H 0.07 0.28 8.12 -51.93 -0.42 -0.14 16 43 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.76 8.02 -51.93 -0.42 0.34 16 47 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 377.91 15.07 5.70 5.70 Total: -1.00 -34.82 377.91 -8.68 -43.50 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -7.76 Total: 0.91 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -2.44 Total: 2.29 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: 1.16 Total: -55.29 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -0.31 Total: -13.90 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.82 -8.68 -43.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053908287.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.169 kcal (2) G-P(sol) polarization free energy of solvation -34.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds