Wall clock time and date at job start Wed Apr 1 2020 04:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 120.00153 * 2 1 4 4 H 1.48495 * 109.47490 * 240.00284 * 3 2 1 5 5 H 1.48505 * 109.46887 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47012 * 119.99908 * 3 2 1 7 7 C 1.38815 * 120.00302 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00335 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99554 * 359.97438 * 7 2 1 10 10 C 1.47768 * 134.40682 * 180.02562 * 9 7 2 11 11 C 1.52938 * 85.80860 * 156.09544 * 10 9 7 12 12 C 1.47774 * 134.40928 * 0.02829 * 9 7 2 13 13 C 1.54001 * 115.15214 * 266.50597 * 11 10 9 14 14 C 1.55491 * 100.77781 * 194.48859 * 13 11 10 15 15 H 1.08996 * 110.99817 * 274.81517 * 14 13 11 16 16 N 1.46498 * 110.82480 * 151.33293 * 14 13 11 17 17 C 1.34774 * 120.00060 * 160.59719 * 16 14 13 18 18 O 1.21283 * 119.99814 * 359.97438 * 17 16 14 19 19 C 1.50707 * 120.00118 * 180.02562 * 17 16 14 20 20 H 1.08996 * 109.68563 * 299.44817 * 19 17 16 21 21 C 1.53430 * 109.69925 * 178.87520 * 19 17 16 22 22 C 1.53106 * 109.55813 * 190.57827 * 21 19 17 23 23 C 1.53426 * 109.57717 * 70.05709 * 22 21 19 24 24 C 1.50592 * 108.33467 * 310.18566 * 23 22 21 25 25 N 1.32914 * 129.16107 * 196.52730 * 24 23 22 26 26 N 1.29017 * 108.63496 * 179.86729 * 25 24 23 27 27 N 1.29110 * 110.26030 * 0.02761 * 26 25 24 28 28 H 0.96996 * 126.00532 * 180.02562 * 27 26 25 29 29 C 1.34399 * 107.98304 * 0.04795 * 27 26 25 30 30 C 1.54466 * 102.37072 * 33.11437 * 14 13 11 31 31 O 1.42546 * 116.18789 * 141.03018 * 11 10 9 32 32 H 0.96998 * 119.99938 * 359.97438 * 1 2 3 33 33 H 1.09005 * 113.81863 * 41.87388 * 10 9 7 34 34 H 1.09003 * 113.81881 * 270.31807 * 10 9 7 35 35 H 1.08994 * 113.81959 * 89.67829 * 12 9 7 36 36 H 1.08999 * 113.81990 * 318.11796 * 12 9 7 37 37 H 1.08997 * 111.15906 * 76.61033 * 13 11 10 38 38 H 1.09000 * 111.15574 * 312.36085 * 13 11 10 39 39 H 0.97005 * 120.00423 * 340.59570 * 16 14 13 40 40 H 1.09001 * 109.46030 * 70.55483 * 21 19 17 41 41 H 1.08992 * 109.45657 * 310.60311 * 21 19 17 42 42 H 1.09004 * 109.45536 * 310.03069 * 22 21 19 43 43 H 1.09002 * 109.45768 * 190.09416 * 22 21 19 44 44 H 1.08999 * 109.68851 * 69.89822 * 23 22 21 45 45 H 1.09004 * 109.69220 * 190.42987 * 23 22 21 46 46 H 1.08998 * 109.83069 * 98.14141 * 30 14 13 47 47 H 1.08996 * 109.82923 * 219.12232 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 1.7228 -3.8114 -0.0005 11 6 0.3496 -4.0785 0.6175 12 6 -0.1057 -2.7557 -0.0006 13 6 0.3223 -4.1244 2.1566 14 6 -1.0689 -4.7736 2.4035 15 1 -1.8571 -4.0208 2.4011 16 7 -1.0761 -5.5280 3.6593 17 6 -2.2457 -5.8333 4.2553 18 8 -3.2922 -5.4830 3.7522 19 6 -2.2532 -6.6089 5.5474 20 1 -1.7852 -7.5814 5.3946 21 6 -3.6977 -6.7994 6.0280 22 6 -3.6943 -7.3486 7.4572 23 6 -3.2052 -6.2624 8.4241 24 6 -1.9238 -5.6869 7.8811 25 7 -1.0032 -4.9555 8.5009 26 7 -0.0644 -4.6764 7.6611 27 7 -0.3275 -5.1942 6.5080 28 1 0.2241 -5.1260 5.7131 29 6 -1.5003 -5.8437 6.6027 30 6 -1.2113 -5.7217 1.1924 31 8 -0.3266 -5.2492 0.1658 32 1 -0.4850 0.8400 0.0004 33 1 2.5563 -4.0358 0.6651 34 1 1.8464 -4.2339 -0.9977 35 1 -0.5333 -2.8599 -0.9977 36 1 -0.7168 -2.1462 0.6651 37 1 0.3693 -3.1216 2.5810 38 1 1.1239 -4.7522 2.5457 39 1 -0.2391 -5.8079 4.0618 40 1 -4.2096 -7.5021 5.3703 41 1 -4.2162 -5.8409 6.0087 42 1 -3.0294 -8.2106 7.5133 43 1 -4.7046 -7.6514 7.7323 44 1 -3.9561 -5.4764 8.5037 45 1 -3.0252 -6.6991 9.4065 46 1 -0.9340 -6.7354 1.4818 47 1 -2.2392 -5.7072 0.8303 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053908287.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:12 Heat of formation + Delta-G solvation = 46.075049 kcal Electronic energy + Delta-G solvation = -31176.765471 eV Core-core repulsion = 26976.376312 eV Total energy + Delta-G solvation = -4200.389159 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.65335 -41.78973 -40.76678 -38.15630 -37.62235 -36.02781 -34.99268 -34.17419 -32.20541 -31.17878 -31.06430 -29.84909 -27.56057 -26.77334 -25.89954 -24.45576 -23.96709 -23.73279 -22.72716 -22.07417 -20.55951 -20.43187 -19.48667 -18.80872 -18.33532 -17.86371 -17.32958 -17.21986 -16.66495 -16.56285 -16.45267 -15.78018 -15.62577 -15.47693 -14.90831 -14.84217 -14.76510 -14.49302 -14.42079 -14.26145 -13.73131 -13.44062 -13.21118 -12.92175 -12.84946 -12.74319 -12.70750 -12.64573 -12.46541 -12.41670 -12.26413 -12.07425 -12.01092 -11.81594 -11.66535 -11.53457 -11.38946 -11.12497 -10.89585 -10.43039 -10.35283 -9.99703 -9.01445 -7.95344 -5.30399 0.35061 1.23470 1.40901 1.43724 1.46805 1.53021 1.58816 1.81993 2.40524 2.78998 3.12462 3.15094 3.23717 3.29561 3.44407 3.54110 3.63167 3.68551 3.73909 3.90643 3.96605 3.99646 4.17107 4.27440 4.32835 4.44864 4.58256 4.58938 4.65803 4.70899 4.75203 4.80113 4.86217 4.96602 4.97894 5.00050 5.09128 5.12541 5.16493 5.20067 5.24378 5.33301 5.45003 5.47152 5.71555 5.82790 6.12135 6.19574 6.84592 6.92799 7.28742 7.54706 8.47613 9.21243 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013783 B = 0.002748 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.979775 B =10187.600737 C =11305.218469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.066 4.066 3 Si 0.979 3.021 4 H -0.277 1.277 5 H -0.297 1.297 6 H -0.272 1.272 7 C -0.233 4.233 8 H 0.091 0.909 9 N -0.629 5.629 10 C 0.130 3.870 11 C 0.080 3.920 12 C 0.149 3.851 13 C -0.114 4.114 14 C 0.124 3.876 15 H 0.079 0.921 16 N -0.709 5.709 17 C 0.516 3.484 18 O -0.553 6.553 19 C -0.018 4.018 20 H 0.163 0.837 21 C -0.100 4.100 22 C -0.108 4.108 23 C -0.040 4.040 24 C -0.012 4.012 25 N -0.291 5.291 26 N -0.109 5.109 27 N -0.369 5.369 28 H 0.454 0.546 29 C -0.009 4.009 30 C 0.045 3.955 31 O -0.378 6.378 32 H 0.248 0.752 33 H 0.079 0.921 34 H 0.045 0.955 35 H 0.008 0.992 36 H 0.046 0.954 37 H 0.076 0.924 38 H 0.119 0.881 39 H 0.409 0.591 40 H 0.099 0.901 41 H 0.059 0.941 42 H 0.087 0.913 43 H 0.104 0.896 44 H 0.085 0.915 45 H 0.098 0.902 46 H 0.099 0.901 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.160 -22.039 15.447 27.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.259 4.259 3 Si 0.807 3.193 4 H -0.203 1.203 5 H -0.224 1.224 6 H -0.198 1.198 7 C -0.361 4.361 8 H 0.109 0.891 9 N -0.358 5.358 10 C 0.005 3.995 11 C 0.039 3.961 12 C 0.023 3.977 13 C -0.152 4.152 14 C 0.018 3.982 15 H 0.098 0.902 16 N -0.363 5.363 17 C 0.302 3.698 18 O -0.429 6.429 19 C -0.041 4.041 20 H 0.180 0.820 21 C -0.139 4.139 22 C -0.146 4.146 23 C -0.079 4.079 24 C -0.153 4.153 25 N -0.156 5.156 26 N -0.087 5.087 27 N -0.091 5.091 28 H 0.303 0.697 29 C -0.146 4.146 30 C -0.032 4.032 31 O -0.295 6.295 32 H 0.057 0.943 33 H 0.097 0.903 34 H 0.063 0.937 35 H 0.025 0.975 36 H 0.064 0.936 37 H 0.095 0.905 38 H 0.137 0.863 39 H 0.247 0.753 40 H 0.118 0.882 41 H 0.078 0.922 42 H 0.106 0.894 43 H 0.122 0.878 44 H 0.103 0.897 45 H 0.116 0.884 46 H 0.117 0.883 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.869 -20.689 15.842 26.509 hybrid contribution 0.358 1.220 -1.497 1.964 sum -4.511 -19.469 14.345 24.601 Atomic orbital electron populations 1.70015 1.06580 1.25750 1.57844 1.25658 0.96494 1.00999 1.02713 0.85143 0.77129 0.78584 0.78428 1.20301 1.22370 1.19785 1.19365 0.90940 0.82697 1.43120 0.89149 1.46027 1.02956 1.00583 1.86208 1.22700 0.94683 0.83474 0.98612 1.23649 0.93856 0.84635 0.93969 1.22447 0.87715 0.91107 0.96399 1.22908 0.96403 1.02498 0.93376 1.22305 0.98359 0.93408 0.84100 0.90244 1.45913 1.09074 1.57011 1.24325 1.21022 0.83317 0.79247 0.86211 1.90770 1.32605 1.53179 1.66341 1.20208 0.99095 0.98785 0.86010 0.81963 1.21543 0.91143 1.03142 0.98022 1.21662 1.04056 0.97308 0.91570 1.20238 0.88882 0.98541 1.00261 1.22352 1.00035 1.01570 0.91316 1.74847 1.00949 1.14458 1.25308 1.78597 1.21486 1.19454 0.89209 1.44862 1.16799 1.34725 1.12720 0.69748 1.21717 0.90034 1.04092 0.98756 1.23617 0.94268 0.98318 0.87013 1.88307 1.57980 1.42860 1.40402 0.94294 0.90326 0.93723 0.97452 0.93602 0.90517 0.86310 0.75309 0.88230 0.92239 0.89435 0.87797 0.89675 0.88351 0.88286 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.90 11.40 21.65 0.25 -57.65 16 2 C -0.07 -3.71 5.50 84.86 0.47 -3.25 16 3 Si 0.98 45.51 29.55 68.60 2.03 47.54 16 4 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 7 C -0.23 -12.84 10.70 84.03 0.90 -11.94 16 8 H 0.09 4.67 7.83 -2.91 -0.02 4.65 16 9 N -0.63 -31.79 3.69 -739.73 -2.73 -34.52 16 10 C 0.13 5.07 8.49 86.11 0.73 5.80 16 11 C 0.08 2.89 1.47 -10.44 -0.02 2.87 16 12 C 0.15 7.29 6.98 86.11 0.60 7.89 16 13 C -0.11 -3.16 6.02 31.79 0.19 -2.97 16 14 C 0.12 3.09 3.29 46.35 0.15 3.24 16 15 H 0.08 2.52 7.71 -2.39 -0.02 2.50 16 16 N -0.71 -11.47 4.70 -436.13 -2.05 -13.52 16 17 C 0.52 9.44 7.14 87.66 0.63 10.07 16 18 O -0.55 -15.15 15.57 -3.04 -0.05 -15.19 16 19 C -0.02 -0.20 2.91 -12.19 -0.04 -0.23 16 20 H 0.16 0.53 8.14 -2.39 -0.02 0.51 16 21 C -0.10 -1.04 4.66 30.77 0.14 -0.89 16 22 C -0.11 -0.65 5.90 30.77 0.18 -0.47 16 23 C -0.04 -0.45 6.30 29.96 0.19 -0.27 16 24 C -0.01 -0.22 7.11 41.75 0.30 0.07 16 25 N -0.29 -7.36 12.40 -48.99 -0.61 -7.97 16 26 N -0.11 -2.68 13.40 37.02 0.50 -2.19 16 27 N -0.37 -6.31 6.76 -48.27 -0.33 -6.63 16 28 H 0.45 5.18 6.82 -219.68 -1.50 3.69 16 29 C -0.01 -0.15 6.38 41.50 0.26 0.12 16 30 C 0.05 1.16 7.57 72.48 0.55 1.71 16 31 O -0.38 -12.57 11.17 -148.98 -1.66 -14.23 16 32 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 33 H 0.08 2.62 8.11 -2.38 -0.02 2.60 16 34 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.05 2.48 7.16 -2.39 -0.02 2.46 16 37 H 0.08 2.58 8.05 -2.39 -0.02 2.56 16 38 H 0.12 2.31 7.98 -2.39 -0.02 2.29 16 39 H 0.41 3.67 6.54 -92.70 -0.61 3.06 16 40 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.06 0.94 7.75 -2.39 -0.02 0.92 16 42 H 0.09 0.29 8.12 -2.38 -0.02 0.27 16 43 H 0.10 0.27 8.14 -2.39 -0.02 0.26 16 44 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 46 H 0.10 1.91 8.02 -2.39 -0.02 1.89 16 47 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -80.29 377.91 -0.50 -80.79 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -1.08 Total: 11.82 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: 5.24 Total: 11.76 kcal Atomic # 7 Polarization: -117.50 SS G_CDS: -4.97 Total: -122.47 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -1.71 Total: -29.43 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -80.29 -0.50 -80.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053908287.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.865 kcal (2) G-P(sol) polarization free energy of solvation -80.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds