Wall clock time and date at job start Wed Apr 1 2020 04:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86804 * 119.99913 * 2 1 4 4 H 1.48491 * 109.47188 * 274.99223 * 3 2 1 5 5 H 1.48502 * 109.47035 * 34.99079 * 3 2 1 6 6 H 1.48497 * 109.47141 * 154.98516 * 3 2 1 7 7 C 1.38814 * 120.00219 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99930 * 185.08827 * 7 2 1 9 9 N 1.36934 * 119.99710 * 5.09079 * 7 2 1 10 10 C 1.47774 * 134.40800 * 173.50754 * 9 7 2 11 11 C 1.52943 * 85.80512 * 156.09971 * 10 9 7 12 12 C 1.47772 * 134.41024 * 353.53622 * 9 7 2 13 13 C 1.54268 * 115.17920 * 266.69470 * 11 10 9 14 14 C 1.55472 * 100.66528 * 194.63236 * 13 11 10 15 15 H 1.09001 * 110.83012 * 274.55555 * 14 13 11 16 16 N 1.46506 * 110.82714 * 151.19533 * 14 13 11 17 17 C 1.34775 * 120.00197 * 157.71094 * 16 14 13 18 18 O 1.21289 * 119.99751 * 0.02562 * 17 16 14 19 19 C 1.50695 * 120.00176 * 180.02562 * 17 16 14 20 20 H 1.09002 * 109.45538 * 300.03501 * 19 17 16 21 21 C 1.53111 * 109.44429 * 180.08156 * 19 17 16 22 22 C 1.53420 * 109.58025 * 169.92987 * 21 19 17 23 23 C 1.50598 * 108.33638 * 49.82728 * 22 21 19 24 24 N 1.32905 * 129.16884 * 163.43267 * 23 22 21 25 25 N 1.29012 * 108.64029 * 180.12732 * 24 23 22 26 26 N 1.29110 * 110.26083 * 359.72738 * 25 24 23 27 27 H 0.96997 * 126.00992 * 180.19598 * 26 25 24 28 28 C 1.34403 * 107.97867 * 0.33653 * 26 25 24 29 29 C 1.50536 * 129.24967 * 180.02562 * 28 26 25 30 30 C 1.54464 * 102.55375 * 32.87684 * 14 13 11 31 31 O 1.42553 * 116.18342 * 141.03486 * 11 10 9 32 32 H 0.96994 * 119.99878 * 359.97438 * 1 2 3 33 33 H 1.08998 * 113.81748 * 41.88007 * 10 9 7 34 34 H 1.08994 * 113.81795 * 270.32223 * 10 9 7 35 35 H 1.09001 * 113.82261 * 89.67691 * 12 9 7 36 36 H 1.09000 * 113.81846 * 318.12092 * 12 9 7 37 37 H 1.08996 * 111.32980 * 76.73922 * 13 11 10 38 38 H 1.09003 * 111.08856 * 312.42276 * 13 11 10 39 39 H 0.96996 * 119.99900 * 337.71931 * 16 14 13 40 40 H 1.08997 * 109.45074 * 289.96187 * 21 19 17 41 41 H 1.08992 * 109.45396 * 49.89309 * 21 19 17 42 42 H 1.09003 * 109.69244 * 169.53132 * 22 21 19 43 43 H 1.08998 * 109.69028 * 290.11330 * 22 21 19 44 44 H 1.08999 * 109.69060 * 282.92989 * 29 28 26 45 45 H 1.09000 * 109.69658 * 43.47814 * 29 28 26 46 46 H 1.08993 * 109.83180 * 98.23702 * 30 14 13 47 47 H 1.08999 * 109.83723 * 219.13076 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.3922 2.1074 -1.3947 5 1 1.5044 2.6200 0.8029 6 1 3.5965 1.4121 0.5920 7 6 2.0104 -1.2021 -0.0005 8 1 3.0872 -1.2040 0.0824 9 7 1.3297 -2.3856 -0.1063 10 6 1.7315 -3.7995 -0.2588 11 6 0.3726 -4.1352 0.3576 12 6 -0.1000 -2.7592 -0.1141 13 6 0.3767 -4.3327 1.8876 14 6 -1.0049 -5.0153 2.0932 15 1 -1.7956 -4.2705 2.1837 16 7 -0.9828 -5.8931 3.2660 17 6 -2.1346 -6.2202 3.8848 18 8 -3.1895 -5.7882 3.4704 19 6 -2.1118 -7.1226 5.0914 20 1 -1.6770 -8.0840 4.8177 21 6 -3.5417 -7.3349 5.5962 22 6 -3.5529 -8.4421 6.6582 23 6 -2.4802 -8.1385 7.6706 24 7 -2.3164 -8.6320 8.8937 25 7 -1.2667 -8.0954 9.4177 26 7 -0.7247 -7.2692 8.5868 27 1 0.0751 -6.7437 8.7448 28 6 -1.4655 -7.2629 7.4653 29 6 -1.2672 -6.4763 6.1973 30 6 -1.1701 -5.8367 0.7956 31 8 -0.3092 -5.2579 -0.1962 32 1 -0.4850 0.8400 0.0004 33 1 2.5797 -4.0856 0.3632 34 1 1.8352 -4.1182 -1.2959 35 1 -0.5482 -2.7644 -1.1077 36 1 -0.6990 -2.2232 0.6221 37 1 0.4253 -3.3776 2.4105 38 1 1.1899 -4.9898 2.1961 39 1 -0.1393 -6.2388 3.5972 40 1 -3.9133 -6.4084 6.0339 41 1 -4.1816 -7.6246 4.7629 42 1 -4.5252 -8.4692 7.1503 43 1 -3.3520 -9.4045 6.1875 44 1 -1.5888 -5.4460 6.3501 45 1 -0.2147 -6.4944 5.9145 46 1 -0.8833 -6.8729 0.9748 47 1 -2.2059 -5.7927 0.4593 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053981360.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:48 Heat of formation + Delta-G solvation = 67.228970 kcal Electronic energy + Delta-G solvation = -30448.822538 eV Core-core repulsion = 26249.350681 eV Total energy + Delta-G solvation = -4199.471857 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.85762 -40.59772 -39.57309 -37.07265 -36.26266 -34.71342 -34.26228 -32.15193 -31.33511 -30.71036 -29.82882 -28.13107 -25.87419 -25.24164 -24.98867 -23.77594 -23.22114 -22.11376 -21.69026 -20.79528 -19.87822 -18.82722 -18.63669 -17.47917 -16.84955 -16.70417 -16.45932 -15.84112 -15.53285 -15.20575 -14.72445 -14.66506 -14.50508 -14.34615 -14.16404 -13.87184 -13.78531 -13.54000 -12.95872 -12.77463 -12.58463 -12.41882 -12.06140 -11.95599 -11.72547 -11.64130 -11.49879 -11.45896 -11.18212 -11.02334 -10.98748 -10.88171 -10.79495 -10.72835 -10.39563 -10.06815 -9.99392 -9.61626 -9.32253 -9.21746 -8.86591 -8.81245 -6.96695 -5.85735 -3.18146 1.10887 2.11409 2.16209 2.44632 2.84490 3.34134 3.39185 3.41625 3.73795 3.99912 4.13653 4.23027 4.25957 4.41771 4.45809 4.53096 4.63220 4.79735 4.85065 4.97379 5.03714 5.08478 5.12017 5.16425 5.24654 5.26941 5.31813 5.34731 5.48672 5.56872 5.66738 5.77468 5.83430 5.90100 5.91317 6.03543 6.20058 6.28480 6.36842 6.39371 6.53475 6.62713 6.96594 7.14648 7.24971 7.44226 7.63672 7.88592 7.97641 8.04048 8.96079 9.62119 10.50331 11.31865 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015572 B = 0.002216 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.612214 B =12634.697160 C =13523.899623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.005 4.005 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.225 4.225 8 H 0.082 0.918 9 N -0.605 5.605 10 C 0.129 3.871 11 C 0.055 3.945 12 C 0.160 3.840 13 C -0.121 4.121 14 C 0.110 3.890 15 H 0.108 0.892 16 N -0.717 5.717 17 C 0.518 3.482 18 O -0.527 6.527 19 C -0.101 4.101 20 H 0.107 0.893 21 C -0.102 4.102 22 C -0.034 4.034 23 C -0.015 4.015 24 N -0.258 5.258 25 N -0.089 5.089 26 N -0.381 5.381 27 H 0.449 0.551 28 C -0.012 4.012 29 C -0.039 4.039 30 C 0.046 3.954 31 O -0.368 6.368 32 H 0.255 0.745 33 H 0.048 0.952 34 H 0.044 0.956 35 H 0.037 0.963 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.076 0.924 39 H 0.400 0.600 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.090 0.910 46 H 0.064 0.936 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.553 -17.263 13.564 22.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.202 4.202 3 Si 0.741 3.259 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.352 4.352 8 H 0.100 0.900 9 N -0.333 5.333 10 C 0.003 3.997 11 C 0.014 3.986 12 C 0.034 3.966 13 C -0.159 4.159 14 C 0.005 3.995 15 H 0.126 0.874 16 N -0.369 5.369 17 C 0.304 3.696 18 O -0.402 6.402 19 C -0.123 4.123 20 H 0.125 0.875 21 C -0.140 4.140 22 C -0.073 4.073 23 C -0.154 4.154 24 N -0.124 5.124 25 N -0.067 5.067 26 N -0.100 5.100 27 H 0.295 0.705 28 C -0.147 4.147 29 C -0.079 4.079 30 C -0.032 4.032 31 O -0.286 6.286 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.090 0.910 37 H 0.117 0.883 38 H 0.094 0.906 39 H 0.235 0.765 40 H 0.095 0.905 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.105 0.895 44 H 0.115 0.885 45 H 0.109 0.891 46 H 0.082 0.918 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.298 -17.403 14.504 22.893 hybrid contribution 1.488 1.697 -0.646 2.348 sum -1.810 -15.705 13.858 21.023 Atomic orbital electron populations 1.69835 1.05061 1.25573 1.55807 1.24844 0.95691 0.97597 1.02091 0.86125 0.78685 0.83475 0.77623 1.21518 1.21672 1.20533 1.18958 0.90706 0.81631 1.43890 0.90031 1.45721 1.02238 1.00538 1.84848 1.22551 0.93068 0.86210 0.97899 1.24260 0.95461 0.87475 0.91356 1.22498 0.88195 0.86999 0.98890 1.23006 0.94536 1.01975 0.96355 1.22682 1.00080 0.92168 0.84524 0.87371 1.45992 1.09222 1.50741 1.30913 1.20422 0.83953 0.81080 0.84184 1.90757 1.30305 1.53163 1.65981 1.21367 0.98829 0.99599 0.92500 0.87522 1.21498 0.94364 0.99446 0.98691 1.20030 0.95684 0.99352 0.92276 1.21805 0.99465 0.99159 0.95014 1.74841 1.09547 1.20406 1.07586 1.78597 1.06447 1.05054 1.16651 1.44718 1.23177 1.31382 1.10740 0.70500 1.21754 0.96072 1.04626 0.92270 1.20145 1.01222 0.98707 0.87829 1.23442 0.95260 0.96578 0.87968 1.88321 1.58657 1.45433 1.36160 0.93475 0.93357 0.93861 0.94498 0.91013 0.88285 0.90570 0.76504 0.90490 0.89065 0.89097 0.89547 0.88538 0.89143 0.91801 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.55 11.52 55.49 0.64 -25.92 16 2 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 3 Si 0.91 21.52 29.56 -169.99 -5.02 16.49 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 7 C -0.22 -6.08 10.69 -15.06 -0.16 -6.24 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.60 -15.01 3.69 -183.21 -0.68 -15.69 16 10 C 0.13 2.59 8.50 -3.38 -0.03 2.56 16 11 C 0.05 1.01 1.48 -90.17 -0.13 0.88 16 12 C 0.16 3.72 6.89 -3.38 -0.02 3.70 16 13 C -0.12 -1.75 6.05 -24.75 -0.15 -1.90 16 14 C 0.11 1.42 3.32 -65.85 -0.22 1.20 16 15 H 0.11 1.64 7.63 -51.93 -0.40 1.25 16 16 N -0.72 -6.43 5.03 -51.79 -0.26 -6.69 16 17 C 0.52 4.98 7.13 -10.99 -0.08 4.90 16 18 O -0.53 -7.34 15.50 5.55 0.09 -7.25 16 19 C -0.10 -0.63 2.50 -91.50 -0.23 -0.85 16 20 H 0.11 0.49 8.12 -51.93 -0.42 0.07 16 21 C -0.10 -0.70 4.64 -26.46 -0.12 -0.82 16 22 C -0.03 -0.23 6.30 -27.71 -0.17 -0.40 16 23 C -0.01 -0.13 7.11 -83.12 -0.59 -0.72 16 24 N -0.26 -2.94 12.40 33.16 0.41 -2.53 16 25 N -0.09 -0.92 13.40 60.35 0.81 -0.11 16 26 N -0.38 -2.56 6.97 33.39 0.23 -2.33 16 27 H 0.45 1.30 8.96 -190.08 -1.70 -0.40 16 28 C -0.01 -0.08 7.15 -82.49 -0.59 -0.67 16 29 C -0.04 -0.20 5.43 -27.74 -0.15 -0.35 16 30 C 0.05 0.64 7.58 37.93 0.29 0.92 16 31 O -0.37 -6.44 11.17 -35.23 -0.39 -6.84 16 32 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.05 0.88 8.11 -51.93 -0.42 0.46 16 34 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.07 1.80 7.36 -51.93 -0.38 1.41 16 37 H 0.10 1.63 8.05 -51.93 -0.42 1.21 16 38 H 0.08 0.91 7.98 -51.93 -0.41 0.50 16 39 H 0.40 2.39 8.20 -40.82 -0.33 2.05 16 40 H 0.08 0.60 8.12 -51.93 -0.42 0.18 16 41 H 0.09 0.67 7.76 -51.93 -0.40 0.27 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.10 0.53 8.12 -51.93 -0.42 0.10 16 45 H 0.09 0.25 7.90 -51.93 -0.41 -0.16 16 46 H 0.06 0.77 8.02 -51.93 -0.42 0.35 16 47 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 381.98 15.07 5.76 5.76 Total: -1.00 -35.38 381.98 -9.10 -44.49 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -8.22 Total: -1.36 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -2.46 Total: 1.98 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: 1.16 Total: -53.27 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.31 Total: -14.09 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.38 -9.10 -44.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053981360.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.715 kcal (2) G-P(sol) polarization free energy of solvation -35.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds