Wall clock time and date at job start Wed Apr 1 2020 04:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86805 * 119.99865 * 2 1 4 4 H 1.48494 * 109.47446 * 239.99996 * 3 2 1 5 5 H 1.48494 * 109.47137 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46868 * 120.00183 * 3 2 1 7 7 C 1.38813 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00109 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99566 * 359.97438 * 7 2 1 10 10 C 1.47086 * 125.63204 * 0.02917 * 9 7 2 11 11 C 1.54464 * 107.30398 * 180.71467 * 10 9 7 12 12 C 1.54347 * 102.85812 * 21.47780 * 11 10 9 13 13 C 1.47582 * 125.62201 * 179.72241 * 9 7 2 14 14 C 1.52072 * 110.61232 * 83.53698 * 12 11 10 15 15 C 1.53185 * 109.67744 * 64.19005 * 14 12 11 16 16 C 1.53192 * 109.28004 * 59.96224 * 15 14 12 17 17 N 1.46934 * 108.92678 * 304.68004 * 16 15 14 18 18 C 1.34781 * 120.71251 * 234.27787 * 17 16 15 19 19 O 1.21283 * 119.99899 * 179.97438 * 18 17 16 20 20 C 1.50698 * 119.99671 * 0.02562 * 18 17 16 21 21 C 1.50708 * 109.46923 * 179.97438 * 20 18 17 22 22 N 1.31871 * 119.63411 * 269.72827 * 21 20 18 23 23 C 1.31846 * 121.74801 * 179.75339 * 22 21 20 24 24 C 1.38239 * 120.81795 * 0.52279 * 23 22 21 25 25 C 1.38589 * 119.18967 * 359.74743 * 24 23 22 26 26 C 1.38419 * 119.63567 * 90.00054 * 21 20 18 27 27 F 1.35101 * 120.44031 * 359.97438 * 26 21 20 28 28 C 1.47111 * 118.57822 * 54.25924 * 17 16 15 29 29 H 0.96999 * 120.00420 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.87174 * 300.14349 * 10 9 7 31 31 H 1.08998 * 109.87616 * 61.13363 * 10 9 7 32 32 H 1.08999 * 110.73589 * 139.81876 * 11 10 9 33 33 H 1.08998 * 110.73459 * 262.95248 * 11 10 9 34 34 H 1.09004 * 110.37617 * 275.80912 * 13 9 7 35 35 H 1.08999 * 110.38190 * 38.16079 * 13 9 7 36 36 H 1.09004 * 109.43855 * 184.25123 * 14 12 11 37 37 H 1.09002 * 109.43912 * 304.17083 * 14 12 11 38 38 H 1.09004 * 109.50775 * 179.90328 * 15 14 12 39 39 H 1.08997 * 109.50459 * 299.98596 * 15 14 12 40 40 H 1.08999 * 109.56012 * 64.51447 * 16 15 14 41 41 H 1.08997 * 109.56207 * 184.84659 * 16 15 14 42 42 H 1.08994 * 109.47380 * 299.99902 * 20 18 17 43 43 H 1.08997 * 109.47423 * 60.00178 * 20 18 17 44 44 H 1.07991 * 119.59184 * 180.26412 * 23 22 21 45 45 H 1.07996 * 120.40196 * 179.72354 * 24 23 22 46 46 H 1.07999 * 120.79968 * 180.02562 * 25 24 23 47 47 H 1.09001 * 109.57951 * 187.94082 * 28 17 16 48 48 H 1.09000 * 109.57830 * 67.55198 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6966 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1382 -2.5323 -0.0006 11 6 -0.4508 -4.0449 0.0178 12 6 0.8503 -4.6577 0.5781 13 6 1.9346 -3.7322 -0.0069 14 6 0.8569 -4.6027 2.0978 15 6 -0.2741 -5.4756 2.6504 16 6 -0.0675 -6.9221 2.1903 17 7 0.0329 -6.9463 0.7246 18 6 -0.7714 -7.7425 -0.0074 19 8 -0.6777 -7.7519 -1.2166 20 6 -1.7877 -8.6202 0.6765 21 6 -2.5526 -9.4038 -0.3589 22 7 -3.6599 -8.9018 -0.8698 23 6 -4.3590 -9.5490 -1.7812 24 6 -3.9577 -10.7935 -2.2298 25 6 -2.8020 -11.3578 -1.7134 26 6 -2.0883 -10.6449 -0.7589 27 9 -0.9560 -11.1558 -0.2279 28 6 1.0297 -6.0825 0.0732 29 1 -0.4851 0.8400 -0.0004 30 1 -0.5575 -2.0563 0.8858 31 1 -0.5555 -2.0762 -0.8983 32 1 -1.2924 -4.2570 0.6771 33 1 -0.6500 -4.4100 -0.9897 34 1 2.1808 -4.0326 -1.0254 35 1 2.8260 -3.7481 0.6203 36 1 1.8134 -4.9698 2.4700 37 1 0.7119 -3.5728 2.4242 38 1 -0.2658 -5.4355 3.7397 39 1 -1.2313 -5.1086 2.2801 40 1 0.8509 -7.3159 2.6256 41 1 -0.9141 -7.5306 2.5082 42 1 -1.2782 -9.3087 1.3506 43 1 -2.4793 -7.9994 1.2460 44 1 -5.2585 -9.1033 -2.1792 45 1 -4.5379 -11.3196 -2.9733 46 1 -2.4643 -12.3283 -2.0456 47 1 0.8851 -6.1081 -1.0069 48 1 2.0324 -6.4332 0.3177 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054184289.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:59 Heat of formation + Delta-G solvation = -14.813880 kcal Electronic energy + Delta-G solvation = -31232.285223 eV Core-core repulsion = 27009.335760 eV Total energy + Delta-G solvation = -4222.949463 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.26024 -40.73229 -40.04986 -38.33856 -35.84768 -33.60566 -32.94033 -32.14402 -31.82223 -30.23208 -28.82919 -28.37412 -25.65988 -25.28775 -23.92130 -23.62887 -22.73481 -22.06991 -20.15412 -19.34848 -18.11722 -17.96734 -17.55174 -17.31696 -16.83428 -16.55089 -15.99809 -15.52040 -15.31874 -14.90832 -14.58260 -14.31985 -14.11438 -13.94332 -13.81048 -13.62653 -13.43427 -13.25686 -13.16996 -13.04613 -12.63774 -12.30802 -12.16246 -11.97790 -11.89670 -11.68877 -11.05476 -10.92945 -10.83796 -10.63484 -10.52563 -10.26148 -10.07608 -10.04244 -9.89829 -9.87502 -9.76590 -9.61499 -9.53527 -9.11767 -8.53778 -8.45430 -6.76121 -5.65319 -2.98466 0.58804 0.77711 2.64637 2.92435 3.38138 3.43397 3.47669 3.48929 3.68211 3.94231 4.23354 4.36889 4.50593 4.54382 4.58995 4.79499 4.95002 5.01959 5.08102 5.12153 5.23350 5.23675 5.34193 5.35431 5.45509 5.51343 5.57499 5.63836 5.66233 5.77912 5.91111 5.96156 6.01436 6.05303 6.17295 6.28066 6.37522 6.42702 6.52251 6.60645 6.69263 6.75740 6.86844 6.99634 7.44688 7.55469 7.62351 7.72308 7.89780 8.19657 8.32002 9.27988 9.88394 10.55564 11.46065 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.021089 B = 0.002460 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.384656 B =11379.145009 C =11910.325249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.911 3.089 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.226 4.226 8 H 0.076 0.924 9 N -0.603 5.603 10 C 0.181 3.819 11 C -0.130 4.130 12 C -0.085 4.085 13 C 0.148 3.852 14 C -0.096 4.096 15 C -0.137 4.137 16 C 0.106 3.894 17 N -0.604 5.604 18 C 0.525 3.475 19 O -0.536 6.536 20 C -0.096 4.096 21 C 0.129 3.871 22 N -0.446 5.446 23 C 0.095 3.905 24 C -0.147 4.147 25 C -0.108 4.108 26 C 0.060 3.940 27 F -0.128 7.128 28 C 0.130 3.870 29 H 0.252 0.748 30 H 0.043 0.957 31 H 0.039 0.961 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.019 0.981 35 H 0.039 0.961 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.111 0.889 43 H 0.119 0.881 44 H 0.165 0.835 45 H 0.145 0.855 46 H 0.147 0.853 47 H 0.091 0.909 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.225 -24.665 3.470 25.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.355 4.355 8 H 0.094 0.906 9 N -0.329 5.329 10 C 0.056 3.944 11 C -0.168 4.168 12 C -0.087 4.087 13 C 0.022 3.978 14 C -0.134 4.134 15 C -0.175 4.175 16 C -0.016 4.016 17 N -0.337 5.337 18 C 0.311 3.689 19 O -0.413 6.413 20 C -0.137 4.137 21 C -0.011 4.011 22 N -0.154 5.154 23 C -0.063 4.063 24 C -0.167 4.167 25 C -0.135 4.135 26 C 0.038 3.962 27 F -0.107 7.107 28 C 0.008 3.992 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.036 0.964 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.129 0.871 43 H 0.138 0.862 44 H 0.182 0.818 45 H 0.163 0.837 46 H 0.165 0.835 47 H 0.110 0.890 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.477 -23.628 3.131 24.979 hybrid contribution 0.907 0.023 -0.234 0.937 sum -6.570 -23.604 2.896 24.672 Atomic orbital electron populations 1.69966 1.04838 1.24996 1.57140 1.24786 0.95687 0.97571 1.02452 0.86219 0.78434 0.83377 0.77839 1.21249 1.21674 1.21250 1.18999 0.90351 0.82465 1.43660 0.90601 1.44481 1.01664 0.99651 1.87111 1.21141 0.84164 0.88353 1.00740 1.22837 0.95506 0.99109 0.99346 1.21390 0.98512 0.93144 0.95641 1.21383 0.93716 0.86014 0.96730 1.21221 0.97198 1.00936 0.94007 1.22007 1.00773 0.94281 1.00441 1.21798 1.02028 0.98202 0.79621 1.48072 1.36856 1.41734 1.07019 1.20073 0.81057 0.80354 0.87369 1.90716 1.69612 1.67060 1.13908 1.20607 0.97381 0.98931 0.96741 1.20647 0.92953 0.90528 0.97006 1.67507 1.05071 1.33626 1.09196 1.22850 0.98883 0.91739 0.92787 1.22086 0.96639 0.97067 1.00905 1.21627 0.95324 1.01034 0.95507 1.18501 0.85492 0.94624 0.97591 1.91512 1.47849 1.86691 1.84644 1.21491 0.90117 0.88740 0.98823 0.93804 0.93840 0.94256 0.92328 0.92755 0.96379 0.94262 0.92469 0.90228 0.90920 0.90965 0.91186 0.90219 0.87090 0.86244 0.81761 0.83690 0.83505 0.89042 0.91806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.49 10.30 55.49 0.57 -26.92 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.23 -6.37 10.28 -15.06 -0.15 -6.52 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.64 16 9 N -0.60 -15.51 3.39 -170.32 -0.58 -16.09 16 10 C 0.18 4.50 5.01 -2.95 -0.01 4.48 16 11 C -0.13 -2.57 5.68 -25.26 -0.14 -2.71 16 12 C -0.09 -1.47 0.55 -154.10 -0.08 -1.55 16 13 C 0.15 3.09 6.15 -2.88 -0.02 3.07 16 14 C -0.10 -1.46 4.66 -27.11 -0.13 -1.59 16 15 C -0.14 -1.61 5.91 -26.54 -0.16 -1.77 16 16 C 0.11 1.07 6.32 -3.71 -0.02 1.05 16 17 N -0.60 -8.08 2.86 -173.20 -0.50 -8.57 16 18 C 0.52 7.62 7.70 -10.98 -0.08 7.53 16 19 O -0.54 -9.98 15.46 5.56 0.09 -9.89 16 20 C -0.10 -1.05 4.16 -29.03 -0.12 -1.17 16 21 C 0.13 1.56 5.28 -82.50 -0.44 1.12 16 22 N -0.45 -5.52 10.27 -9.42 -0.10 -5.62 16 23 C 0.09 0.87 11.18 -17.54 -0.20 0.68 16 24 C -0.15 -1.09 10.11 -39.45 -0.40 -1.49 16 25 C -0.11 -0.93 10.16 -39.22 -0.40 -1.33 16 26 C 0.06 0.66 7.27 -39.28 -0.29 0.38 16 27 F -0.13 -1.46 16.49 2.25 0.04 -1.42 16 28 C 0.13 2.00 5.11 -4.10 -0.02 1.98 16 29 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.04 1.18 7.40 -51.93 -0.38 0.80 16 31 H 0.04 1.11 7.48 -51.93 -0.39 0.72 16 32 H 0.06 1.08 6.09 -51.93 -0.32 0.76 16 33 H 0.05 1.12 7.88 -51.93 -0.41 0.72 16 34 H 0.02 0.39 8.00 -51.93 -0.42 -0.02 16 35 H 0.04 0.78 8.02 -51.93 -0.42 0.37 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 1.47 7.83 -51.93 -0.41 1.06 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.94 6.31 -51.93 -0.33 0.62 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.59 5.94 -51.93 -0.31 0.29 16 42 H 0.11 0.92 7.42 -51.93 -0.39 0.53 16 43 H 0.12 1.13 7.71 -51.93 -0.40 0.73 16 44 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 45 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16 46 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 47 H 0.09 1.61 6.85 -51.93 -0.36 1.26 16 48 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 380.51 15.07 5.73 5.73 Total: -1.00 -34.95 380.51 -9.54 -44.49 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -7.02 Total: -0.90 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -2.76 Total: 1.82 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: -0.60 Total: -57.20 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.95 -9.54 -44.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054184289.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.677 kcal (2) G-P(sol) polarization free energy of solvation -34.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds