Wall clock time and date at job start Wed Apr 1 2020 04:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99688 * 2 1 4 4 H 1.48503 * 109.46933 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47495 * 300.00161 * 3 2 1 6 6 H 1.48500 * 109.47039 * 60.00662 * 3 2 1 7 7 C 1.38816 * 120.00291 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99939 * 164.44086 * 7 2 1 9 9 N 1.36937 * 119.99890 * 344.43814 * 7 2 1 10 10 C 1.47085 * 121.01105 * 155.88392 * 9 7 2 11 11 C 1.53513 * 109.04605 * 116.23603 * 10 9 7 12 12 N 1.46559 * 109.14877 * 46.33481 * 11 10 9 13 13 N 1.39745 * 127.32770 * 160.87034 * 12 11 10 14 14 C 1.31005 * 108.17891 * 179.38721 * 13 12 11 15 15 C 1.40080 * 108.25515 * 0.17035 * 14 13 12 16 16 C 1.50702 * 126.12315 * 180.02562 * 15 14 13 17 17 N 1.46498 * 109.46874 * 260.02513 * 16 15 14 18 18 C 1.34778 * 119.99550 * 180.02562 * 17 16 15 19 19 O 1.21278 * 120.00356 * 359.97438 * 18 17 16 20 20 C 1.50708 * 119.99413 * 179.97438 * 18 17 16 21 21 H 1.09000 * 109.67040 * 300.48876 * 20 18 17 22 22 C 1.53350 * 109.66717 * 179.97438 * 20 18 17 23 23 C 1.52921 * 108.66914 * 172.69814 * 22 20 18 24 24 N 1.45754 * 110.49033 * 50.75524 * 23 22 20 25 25 C 1.33354 * 124.10251 * 341.20233 * 24 23 22 26 26 O 1.21286 * 118.24780 * 181.94089 * 25 24 23 27 27 C 1.50157 * 123.52361 * 1.66784 * 25 24 23 28 28 C 1.34643 * 107.74630 * 0.31640 * 15 14 13 29 29 C 1.47502 * 121.01151 * 335.90979 * 9 7 2 30 30 H 0.96998 * 120.00658 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.51277 * 236.40450 * 10 9 7 32 32 H 1.09006 * 109.50917 * 356.50285 * 10 9 7 33 33 H 1.09002 * 110.05817 * 286.13219 * 11 10 9 34 34 H 1.09002 * 109.05637 * 165.93246 * 11 10 9 35 35 H 1.08000 * 125.87437 * 180.15087 * 14 13 12 36 36 H 1.08999 * 109.46529 * 140.02345 * 16 15 14 37 37 H 1.08995 * 109.47089 * 20.02435 * 16 15 14 38 38 H 0.96996 * 120.00092 * 359.97438 * 17 16 15 39 39 H 1.08999 * 109.60526 * 52.94636 * 22 20 18 40 40 H 1.08997 * 109.60351 * 292.44959 * 22 20 18 41 41 H 1.08992 * 109.30408 * 290.44077 * 23 22 20 42 42 H 1.09003 * 109.30066 * 171.06291 * 23 22 20 43 43 H 0.96996 * 117.95084 * 160.92493 * 24 23 22 44 44 H 1.09003 * 109.54458 * 222.65151 * 27 25 24 45 45 H 1.09000 * 109.20552 * 102.94295 * 27 25 24 46 46 H 1.08999 * 109.94769 * 103.58850 * 29 9 7 47 47 H 1.09002 * 110.01766 * 342.36946 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0606 -1.2191 -0.2514 9 7 1.3633 -2.3665 0.3171 10 6 1.8638 -3.6654 -0.1579 11 6 2.2775 -4.5155 1.0515 12 7 1.2253 -4.4477 2.0694 13 7 1.0158 -5.3310 3.1318 14 6 -0.0190 -4.9096 3.8157 15 6 -0.5032 -3.7451 3.2061 16 6 -1.6837 -2.9277 3.6637 17 7 -2.8545 -3.2623 2.8491 18 6 -4.0329 -2.6501 3.0795 19 8 -4.1242 -1.8226 3.9614 20 6 -5.2371 -2.9938 2.2410 21 1 -5.0265 -2.7830 1.1926 22 6 -6.4414 -2.1645 2.7030 23 6 -7.5965 -2.3931 1.7273 24 7 -7.8211 -3.8194 1.5278 25 6 -6.9243 -4.7645 1.8120 26 8 -7.2099 -5.9182 1.5702 27 6 -5.5774 -4.4766 2.4100 28 6 0.2710 -3.4906 2.1344 29 6 0.1429 -2.3561 1.1456 30 1 -0.4851 0.8400 0.0004 31 1 1.0792 -4.1756 -0.7169 32 1 2.7277 -3.5085 -0.8039 33 1 3.2124 -4.1416 1.4690 34 1 2.4085 -5.5494 0.7317 35 1 -0.4286 -5.3795 4.6977 36 1 -1.4558 -1.8675 3.5542 37 1 -1.8943 -3.1479 4.7102 38 1 -2.7814 -3.9238 2.1435 39 1 -6.1753 -1.1076 2.7134 40 1 -6.7399 -2.4789 3.7031 41 1 -7.3572 -1.9289 0.7707 42 1 -8.5023 -1.9385 2.1284 43 1 -8.6780 -4.0989 1.1694 44 1 -4.8200 -5.0810 1.9107 45 1 -5.5955 -4.7254 3.4711 46 1 -0.7345 -2.5080 0.5170 47 1 0.0603 -1.4076 1.6763 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069856845.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:39 Heat of formation + Delta-G solvation = 24.250003 kcal Electronic energy + Delta-G solvation = -30967.279049 eV Core-core repulsion = 26765.943485 eV Total energy + Delta-G solvation = -4201.335564 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.06246 -40.71444 -39.22762 -36.51580 -36.32168 -34.84335 -33.47275 -32.95923 -31.28756 -30.26196 -29.89968 -28.83579 -26.34383 -25.60038 -24.59504 -23.58932 -22.99931 -21.79313 -20.35562 -20.13096 -19.41270 -18.47521 -17.73697 -17.01420 -16.76901 -16.51166 -16.09090 -15.70356 -15.44834 -15.23253 -15.00605 -14.65109 -14.43320 -14.03046 -13.88933 -13.76578 -13.64421 -13.47578 -13.35254 -13.20457 -12.56521 -12.51188 -12.09399 -11.94065 -11.72863 -11.65734 -11.36659 -11.32005 -11.27414 -11.02924 -10.92388 -10.76204 -10.38814 -10.21833 -10.20447 -10.11732 -9.61246 -9.36129 -8.95389 -8.82019 -8.59286 -7.96970 -7.12736 -6.06110 -3.48495 2.38306 2.40564 2.72494 2.87868 2.97716 3.02637 3.25611 3.34399 3.35477 3.60880 4.26041 4.27862 4.38997 4.51219 4.51413 4.91151 5.00173 5.00884 5.02838 5.05207 5.16844 5.27942 5.33677 5.40079 5.48986 5.50861 5.54134 5.58338 5.68624 5.73457 5.82027 5.91613 6.08685 6.18765 6.33307 6.38206 6.48392 6.49502 6.63366 6.86069 7.04260 7.04837 7.09855 7.53421 7.56847 7.69175 7.95654 8.04860 8.19966 8.34992 8.87837 9.50102 10.02627 11.04946 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010217 B = 0.003191 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.943868 B = 8773.815885 C =10235.953945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.009 3.991 3 Si 0.908 3.092 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.286 1.286 7 C -0.263 4.263 8 H 0.074 0.926 9 N -0.597 5.597 10 C 0.129 3.871 11 C 0.114 3.886 12 N -0.358 5.358 13 N -0.317 5.317 14 C 0.056 3.944 15 C -0.290 4.290 16 C 0.210 3.790 17 N -0.716 5.716 18 C 0.519 3.481 19 O -0.542 6.542 20 C -0.113 4.113 21 H 0.108 0.892 22 C -0.117 4.117 23 C 0.108 3.892 24 N -0.720 5.720 25 C 0.525 3.475 26 O -0.558 6.558 27 C -0.126 4.126 28 C 0.120 3.880 29 C 0.231 3.769 30 H 0.259 0.741 31 H 0.037 0.963 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.175 0.825 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.400 0.600 39 H 0.098 0.902 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.399 0.601 44 H 0.107 0.893 45 H 0.106 0.894 46 H 0.056 0.944 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.906 -5.787 3.355 12.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.737 3.263 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.212 1.212 7 C -0.392 4.392 8 H 0.092 0.908 9 N -0.319 5.319 10 C 0.000 4.000 11 C -0.010 4.010 12 N -0.139 5.139 13 N -0.137 5.137 14 C -0.130 4.130 15 C -0.302 4.302 16 C 0.086 3.914 17 N -0.366 5.366 18 C 0.305 3.695 19 O -0.419 6.419 20 C -0.135 4.135 21 H 0.126 0.874 22 C -0.155 4.155 23 C -0.016 4.016 24 N -0.373 5.373 25 C 0.312 3.688 26 O -0.437 6.437 27 C -0.166 4.166 28 C -0.012 4.012 29 C 0.104 3.896 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.192 0.808 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.234 0.766 39 H 0.116 0.884 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.234 0.766 44 H 0.126 0.874 45 H 0.124 0.876 46 H 0.074 0.926 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.894 -6.461 3.739 12.394 hybrid contribution -0.340 1.064 -0.390 1.183 sum -10.234 -5.397 3.349 12.045 Atomic orbital electron populations 1.69942 1.05236 1.26141 1.53407 1.25026 0.95460 0.98577 1.00005 0.86141 0.79271 0.83338 0.77519 1.20170 1.21441 1.21237 1.19211 0.92517 0.83907 1.43535 0.90816 1.44220 1.29277 1.01416 1.57034 1.21334 0.99259 0.87380 0.91981 1.22602 0.88638 1.01584 0.88175 1.48512 1.23890 1.19351 1.22119 1.77179 1.19905 1.16317 1.00330 1.23680 0.94559 0.95192 0.99600 1.19426 1.05325 1.03225 1.02221 1.19326 0.80529 0.98046 0.93484 1.46242 1.09621 1.43181 1.37569 1.20243 0.83986 0.81156 0.84165 1.90701 1.84867 1.33305 1.33049 1.21474 0.94540 0.95511 1.01976 0.87413 1.21715 0.92344 1.02230 0.99172 1.21480 0.99540 0.80547 1.00045 1.45500 1.18606 1.07204 1.65950 1.20019 0.86506 0.84820 0.77463 1.90778 1.78970 1.20309 1.53596 1.21643 0.94935 0.96036 1.03985 1.22585 0.88533 0.92874 0.97216 1.19912 0.89278 0.92270 0.88112 0.93124 0.94496 0.89740 0.90487 0.90257 0.80752 0.90761 0.91269 0.76605 0.88371 0.90251 0.91100 0.90071 0.76564 0.87420 0.87614 0.92631 0.87301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.84 11.07 55.49 0.61 -23.22 16 2 C 0.01 0.22 5.00 -17.43 -0.09 0.13 16 3 Si 0.91 20.36 29.58 -169.99 -5.03 15.33 16 4 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.26 -6.57 9.67 -15.06 -0.15 -6.72 16 8 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 9 N -0.60 -13.50 3.01 -172.81 -0.52 -14.02 16 10 C 0.13 2.34 6.51 -3.46 -0.02 2.32 16 11 C 0.11 1.89 7.45 -3.74 -0.03 1.86 16 12 N -0.36 -6.67 4.03 -56.79 -0.23 -6.90 16 13 N -0.32 -5.72 12.61 30.70 0.39 -5.33 16 14 C 0.06 0.89 11.97 -17.21 -0.21 0.68 16 15 C -0.29 -4.77 5.46 -105.20 -0.57 -5.35 16 16 C 0.21 3.13 5.95 -5.19 -0.03 3.10 16 17 N -0.72 -9.31 5.47 -61.47 -0.34 -9.65 16 18 C 0.52 6.76 7.13 -10.98 -0.08 6.69 16 19 O -0.54 -8.89 15.90 5.56 0.09 -8.81 16 20 C -0.11 -1.09 2.60 -91.55 -0.24 -1.33 16 21 H 0.11 0.97 8.13 -51.93 -0.42 0.55 16 22 C -0.12 -0.97 4.70 -26.59 -0.13 -1.09 16 23 C 0.11 0.67 7.17 -4.48 -0.03 0.64 16 24 N -0.72 -5.79 5.45 -61.40 -0.33 -6.12 16 25 C 0.52 5.73 7.71 -11.88 -0.09 5.64 16 26 O -0.56 -8.37 17.78 5.55 0.10 -8.28 16 27 C -0.13 -1.18 5.21 -28.11 -0.15 -1.32 16 28 C 0.12 2.28 6.71 -82.17 -0.55 1.73 16 29 C 0.23 5.00 5.11 -4.48 -0.02 4.98 16 30 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 1.41 7.94 -51.93 -0.41 1.00 16 33 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 34 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.18 2.12 8.06 -52.49 -0.42 1.70 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.40 4.73 8.23 -40.82 -0.34 4.39 16 39 H 0.10 0.88 7.90 -51.93 -0.41 0.47 16 40 H 0.08 0.69 8.12 -51.93 -0.42 0.27 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.40 2.77 8.80 -40.82 -0.36 2.41 16 44 H 0.11 0.96 7.98 -51.93 -0.41 0.55 16 45 H 0.11 0.96 8.09 -51.93 -0.42 0.54 16 46 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 47 H 0.11 2.67 6.46 -51.93 -0.34 2.33 16 LS Contribution 385.62 15.07 5.81 5.81 Total: -1.00 -32.61 385.62 -8.71 -41.32 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -6.89 Total: 7.91 kcal Atomic # 6 Polarization: 14.33 SS G_CDS: -2.38 Total: 11.95 kcal Atomic # 7 Polarization: -64.82 SS G_CDS: -0.42 Total: -65.23 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: 0.19 Total: -17.08 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.03 Total: 15.33 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.61 -8.71 -41.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069856845.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.570 kcal (2) G-P(sol) polarization free energy of solvation -32.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds