Wall clock time and date at job start Wed Apr 1 2020 04:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99688 * 2 1 4 4 H 1.48503 * 109.46933 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47495 * 300.00161 * 3 2 1 6 6 H 1.48500 * 109.47039 * 60.00662 * 3 2 1 7 7 C 1.38816 * 120.00291 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99939 * 164.44086 * 7 2 1 9 9 N 1.36937 * 119.99890 * 344.43814 * 7 2 1 10 10 C 1.47085 * 121.01105 * 155.88392 * 9 7 2 11 11 C 1.53513 * 109.04605 * 116.23603 * 10 9 7 12 12 N 1.46559 * 109.14877 * 46.33481 * 11 10 9 13 13 N 1.39745 * 127.32770 * 160.87034 * 12 11 10 14 14 C 1.31005 * 108.17891 * 179.38721 * 13 12 11 15 15 C 1.40080 * 108.25515 * 0.17035 * 14 13 12 16 16 C 1.50702 * 126.12315 * 180.02562 * 15 14 13 17 17 N 1.46498 * 109.46874 * 260.02513 * 16 15 14 18 18 C 1.34778 * 119.99550 * 180.02562 * 17 16 15 19 19 O 1.21278 * 120.00356 * 359.97438 * 18 17 16 20 20 C 1.50708 * 119.99413 * 179.97438 * 18 17 16 21 21 H 1.09000 * 109.67040 * 300.48876 * 20 18 17 22 22 C 1.53350 * 109.66717 * 179.97438 * 20 18 17 23 23 C 1.52921 * 108.66914 * 172.69814 * 22 20 18 24 24 N 1.45754 * 110.49033 * 50.75524 * 23 22 20 25 25 C 1.33354 * 124.10251 * 341.20233 * 24 23 22 26 26 O 1.21286 * 118.24780 * 181.94089 * 25 24 23 27 27 C 1.50157 * 123.52361 * 1.66784 * 25 24 23 28 28 C 1.34643 * 107.74630 * 0.31640 * 15 14 13 29 29 C 1.47502 * 121.01151 * 335.90979 * 9 7 2 30 30 H 0.96998 * 120.00658 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.51277 * 236.40450 * 10 9 7 32 32 H 1.09006 * 109.50917 * 356.50285 * 10 9 7 33 33 H 1.09002 * 110.05817 * 286.13219 * 11 10 9 34 34 H 1.09002 * 109.05637 * 165.93246 * 11 10 9 35 35 H 1.08000 * 125.87437 * 180.15087 * 14 13 12 36 36 H 1.08999 * 109.46529 * 140.02345 * 16 15 14 37 37 H 1.08995 * 109.47089 * 20.02435 * 16 15 14 38 38 H 0.96996 * 120.00092 * 359.97438 * 17 16 15 39 39 H 1.08999 * 109.60526 * 52.94636 * 22 20 18 40 40 H 1.08997 * 109.60351 * 292.44959 * 22 20 18 41 41 H 1.08992 * 109.30408 * 290.44077 * 23 22 20 42 42 H 1.09003 * 109.30066 * 171.06291 * 23 22 20 43 43 H 0.96996 * 117.95084 * 160.92493 * 24 23 22 44 44 H 1.09003 * 109.54458 * 222.65151 * 27 25 24 45 45 H 1.09000 * 109.20552 * 102.94295 * 27 25 24 46 46 H 1.08999 * 109.94769 * 103.58850 * 29 9 7 47 47 H 1.09002 * 110.01766 * 342.36946 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0606 -1.2191 -0.2514 9 7 1.3633 -2.3665 0.3171 10 6 1.8638 -3.6654 -0.1579 11 6 2.2775 -4.5155 1.0515 12 7 1.2253 -4.4477 2.0694 13 7 1.0158 -5.3310 3.1318 14 6 -0.0190 -4.9096 3.8157 15 6 -0.5032 -3.7451 3.2061 16 6 -1.6837 -2.9277 3.6637 17 7 -2.8545 -3.2623 2.8491 18 6 -4.0329 -2.6501 3.0795 19 8 -4.1242 -1.8226 3.9614 20 6 -5.2371 -2.9938 2.2410 21 1 -5.0265 -2.7830 1.1926 22 6 -6.4414 -2.1645 2.7030 23 6 -7.5965 -2.3931 1.7273 24 7 -7.8211 -3.8194 1.5278 25 6 -6.9243 -4.7645 1.8120 26 8 -7.2099 -5.9182 1.5702 27 6 -5.5774 -4.4766 2.4100 28 6 0.2710 -3.4906 2.1344 29 6 0.1429 -2.3561 1.1456 30 1 -0.4851 0.8400 0.0004 31 1 1.0792 -4.1756 -0.7169 32 1 2.7277 -3.5085 -0.8039 33 1 3.2124 -4.1416 1.4690 34 1 2.4085 -5.5494 0.7317 35 1 -0.4286 -5.3795 4.6977 36 1 -1.4558 -1.8675 3.5542 37 1 -1.8943 -3.1479 4.7102 38 1 -2.7814 -3.9238 2.1435 39 1 -6.1753 -1.1076 2.7134 40 1 -6.7399 -2.4789 3.7031 41 1 -7.3572 -1.9289 0.7707 42 1 -8.5023 -1.9385 2.1284 43 1 -8.6780 -4.0989 1.1694 44 1 -4.8200 -5.0810 1.9107 45 1 -5.5955 -4.7254 3.4711 46 1 -0.7345 -2.5080 0.5170 47 1 0.0603 -1.4076 1.6763 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001069856845.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:38 Heat of formation + Delta-G solvation = 0.178146 kcal Electronic energy + Delta-G solvation = -30968.322883 eV Core-core repulsion = 26765.943485 eV Total energy + Delta-G solvation = -4202.379398 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.42496 -41.60987 -40.27666 -37.96167 -37.34100 -36.08488 -34.66395 -34.19051 -32.81768 -31.81115 -30.70274 -30.16390 -27.88244 -26.85649 -25.65985 -25.08654 -23.91585 -23.26486 -21.59112 -21.33483 -20.16680 -19.95385 -18.63700 -18.53967 -18.01328 -17.54096 -17.28832 -16.85339 -16.67310 -16.40994 -16.20789 -16.02366 -15.50037 -15.31445 -15.15576 -15.02850 -14.85790 -14.64465 -14.56677 -14.40450 -13.96104 -13.81397 -13.34657 -13.07071 -12.95852 -12.83689 -12.75927 -12.66412 -12.60527 -12.32708 -12.08063 -12.03522 -12.01740 -11.88242 -11.60104 -11.37542 -10.78560 -10.65327 -10.06366 -10.06065 -9.98988 -9.37052 -8.94276 -7.98432 -5.41552 0.94770 1.45526 1.49655 1.56028 1.56902 1.60780 1.66142 1.68133 2.33289 2.45212 2.50890 3.20900 3.43929 3.47510 3.60954 3.63944 3.73172 3.79676 3.84476 4.12684 4.19430 4.24128 4.27051 4.27306 4.38441 4.44157 4.49227 4.64800 4.73976 4.76942 4.80557 4.88604 4.88885 4.96260 5.03368 5.05595 5.23459 5.25604 5.38097 5.49697 5.59749 5.77414 5.83057 6.10436 6.21266 6.30257 6.61853 6.81813 7.00356 7.17904 7.28141 7.65907 8.17136 9.11133 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010217 B = 0.003191 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.943868 B = 8773.815885 C =10235.953945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.039 4.039 3 Si 0.963 3.037 4 H -0.267 1.267 5 H -0.290 1.290 6 H -0.294 1.294 7 C -0.268 4.268 8 H 0.078 0.922 9 N -0.616 5.616 10 C 0.128 3.872 11 C 0.117 3.883 12 N -0.368 5.368 13 N -0.329 5.329 14 C 0.066 3.934 15 C -0.275 4.275 16 C 0.216 3.784 17 N -0.711 5.711 18 C 0.519 3.481 19 O -0.577 6.577 20 C -0.104 4.104 21 H 0.117 0.883 22 C -0.116 4.116 23 C 0.111 3.889 24 N -0.709 5.709 25 C 0.523 3.477 26 O -0.605 6.605 27 C -0.119 4.119 28 C 0.095 3.905 29 C 0.250 3.750 30 H 0.253 0.747 31 H 0.041 0.959 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.109 0.891 35 H 0.214 0.786 36 H 0.045 0.955 37 H 0.085 0.915 38 H 0.407 0.593 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.109 0.891 43 H 0.407 0.593 44 H 0.112 0.888 45 H 0.110 0.890 46 H 0.037 0.963 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.142 -6.671 3.680 13.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.236 4.236 3 Si 0.792 3.208 4 H -0.192 1.192 5 H -0.217 1.217 6 H -0.221 1.221 7 C -0.397 4.397 8 H 0.095 0.905 9 N -0.340 5.340 10 C 0.002 3.998 11 C -0.006 4.006 12 N -0.149 5.149 13 N -0.149 5.149 14 C -0.120 4.120 15 C -0.287 4.287 16 C 0.092 3.908 17 N -0.361 5.361 18 C 0.306 3.694 19 O -0.456 6.456 20 C -0.125 4.125 21 H 0.135 0.865 22 C -0.154 4.154 23 C -0.012 4.012 24 N -0.360 5.360 25 C 0.311 3.689 26 O -0.487 6.487 27 C -0.159 4.159 28 C -0.036 4.036 29 C 0.123 3.877 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.116 0.884 33 H 0.095 0.905 34 H 0.128 0.872 35 H 0.231 0.769 36 H 0.064 0.936 37 H 0.103 0.897 38 H 0.242 0.758 39 H 0.111 0.889 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.127 0.873 43 H 0.243 0.757 44 H 0.130 0.870 45 H 0.128 0.872 46 H 0.055 0.945 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.121 -7.349 4.037 13.143 hybrid contribution -0.264 1.330 -0.460 1.432 sum -10.385 -6.019 3.577 12.525 Atomic orbital electron populations 1.70073 1.06301 1.26152 1.54899 1.25669 0.96122 1.01130 1.00664 0.85271 0.78694 0.80103 0.76749 1.19156 1.21659 1.22080 1.19512 0.92868 0.85018 1.42336 0.90476 1.44448 1.29407 1.02426 1.57688 1.21483 0.99710 0.85617 0.93034 1.22574 0.88028 1.02850 0.87110 1.48690 1.24099 1.19349 1.22789 1.77170 1.20811 1.16448 1.00453 1.24256 0.93391 0.94359 1.00003 1.19565 1.04885 1.03201 1.01057 1.19167 0.80877 0.96170 0.94593 1.46155 1.09208 1.43268 1.37497 1.20798 0.84563 0.80225 0.83814 1.90686 1.85448 1.34802 1.34699 1.21442 0.93420 0.96030 1.01629 0.86535 1.21713 0.92459 1.01553 0.99657 1.21617 0.99885 0.79381 1.00303 1.45494 1.18342 1.07647 1.64498 1.20189 0.87078 0.84499 0.77128 1.90760 1.79895 1.22187 1.55883 1.21581 0.94469 0.95608 1.04238 1.22245 0.90330 0.93005 0.98022 1.19362 0.88587 0.91747 0.88003 0.93757 0.94067 0.88391 0.90489 0.87250 0.76929 0.93646 0.89692 0.75755 0.88947 0.90589 0.89756 0.87271 0.75715 0.86960 0.87174 0.94509 0.90878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -50.52 11.07 21.65 0.24 -50.28 16 2 C -0.04 -2.04 5.00 84.86 0.42 -1.62 16 3 Si 0.96 42.39 29.58 68.60 2.03 44.41 16 4 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 7 C -0.27 -13.49 9.67 84.03 0.81 -12.67 16 8 H 0.08 3.74 7.88 -2.91 -0.02 3.72 16 9 N -0.62 -28.12 3.01 -700.64 -2.11 -30.23 16 10 C 0.13 4.55 6.51 86.44 0.56 5.12 16 11 C 0.12 3.69 7.45 86.54 0.65 4.34 16 12 N -0.37 -13.22 4.03 -333.60 -1.34 -14.56 16 13 N -0.33 -11.10 12.61 -56.79 -0.72 -11.82 16 14 C 0.07 1.92 11.97 85.26 1.02 2.94 16 15 C -0.27 -8.80 5.46 -20.24 -0.11 -8.91 16 16 C 0.22 6.42 5.95 85.63 0.51 6.93 16 17 N -0.71 -18.24 5.47 -466.79 -2.55 -20.79 16 18 C 0.52 13.34 7.13 87.66 0.62 13.97 16 19 O -0.58 -18.98 15.90 -3.02 -0.05 -19.03 16 20 C -0.10 -1.88 2.60 -11.40 -0.03 -1.91 16 21 H 0.12 1.95 8.13 -2.39 -0.02 1.93 16 22 C -0.12 -1.76 4.70 30.69 0.14 -1.61 16 23 C 0.11 1.10 7.17 86.49 0.62 1.72 16 24 N -0.71 -10.06 5.45 -467.34 -2.55 -12.61 16 25 C 0.52 10.85 7.71 87.71 0.68 11.52 16 26 O -0.60 -17.92 17.78 -3.05 -0.05 -17.98 16 27 C -0.12 -2.09 5.21 29.70 0.15 -1.93 16 28 C 0.10 3.61 6.71 41.30 0.28 3.89 16 29 C 0.25 11.14 5.11 85.55 0.44 11.58 16 30 H 0.25 13.48 8.31 -92.71 -0.77 12.71 16 31 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.10 3.15 7.94 -2.38 -0.02 3.14 16 33 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.11 2.78 8.14 -2.39 -0.02 2.77 16 35 H 0.21 4.34 8.06 -2.91 -0.02 4.31 16 36 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.41 9.37 8.23 -92.71 -0.76 8.60 16 39 H 0.09 1.56 7.90 -2.39 -0.02 1.54 16 40 H 0.08 1.22 8.12 -2.39 -0.02 1.20 16 41 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.41 4.87 8.80 -92.71 -0.82 4.06 16 44 H 0.11 1.87 7.98 -2.39 -0.02 1.86 16 45 H 0.11 1.86 8.09 -2.39 -0.02 1.84 16 46 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 47 H 0.07 3.77 6.46 -2.39 -0.02 3.75 16 Total: -1.00 -71.62 385.62 -0.89 -72.51 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: -0.56 Total: 27.05 kcal Atomic # 6 Polarization: 26.56 SS G_CDS: 6.77 Total: 33.33 kcal Atomic # 7 Polarization: -131.28 SS G_CDS: -9.02 Total: -140.30 kcal Atomic # 8 Polarization: -36.90 SS G_CDS: -0.10 Total: -37.00 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Total: -71.62 -0.89 -72.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069856845.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.689 kcal (2) G-P(sol) polarization free energy of solvation -71.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds