Wall clock time and date at job start Wed Apr 1 2020 04:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99588 * 2 1 4 4 H 1.48500 * 109.46917 * 268.37165 * 3 2 1 5 5 H 1.48492 * 109.47210 * 28.37428 * 3 2 1 6 6 H 1.48502 * 109.46862 * 148.37692 * 3 2 1 7 7 C 1.38808 * 120.00327 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99743 * 339.86502 * 7 2 1 9 9 N 1.36933 * 120.00244 * 159.87258 * 7 2 1 10 10 C 1.47088 * 121.01260 * 155.22320 * 9 7 2 11 11 C 1.53263 * 109.26114 * 116.45947 * 10 9 7 12 12 N 1.46559 * 109.23731 * 45.97853 * 11 10 9 13 13 N 1.39739 * 127.32360 * 161.35945 * 12 11 10 14 14 C 1.31015 * 108.17885 * 179.54613 * 13 12 11 15 15 C 1.40069 * 108.25215 * 0.14411 * 14 13 12 16 16 C 1.50703 * 126.12543 * 180.09013 * 15 14 13 17 17 N 1.46499 * 109.46714 * 259.97383 * 16 15 14 18 18 C 1.34777 * 119.99956 * 179.97438 * 17 16 15 19 19 O 1.21283 * 119.99782 * 359.97438 * 18 17 16 20 20 C 1.50699 * 120.00258 * 179.97438 * 18 17 16 21 21 H 1.08999 * 109.29917 * 320.41421 * 20 18 17 22 22 C 1.52924 * 109.29880 * 79.99974 * 20 18 17 23 23 C 1.53348 * 108.67120 * 171.06704 * 22 20 18 24 24 C 1.53069 * 108.42385 * 292.46546 * 23 22 20 25 25 C 1.50182 * 109.89141 * 48.90381 * 24 23 22 26 26 O 1.21283 * 118.24355 * 162.43593 * 25 24 23 27 27 N 1.33343 * 123.50488 * 342.41851 * 25 24 23 28 28 C 1.34648 * 107.75024 * 0.06461 * 15 14 13 29 29 C 1.47490 * 121.00515 * 335.15315 * 9 7 2 30 30 H 0.96992 * 119.99953 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.51310 * 356.51720 * 10 9 7 32 32 H 1.08992 * 109.51663 * 236.41146 * 10 9 7 33 33 H 1.09000 * 109.51114 * 165.90631 * 11 10 9 34 34 H 1.08998 * 109.51101 * 286.00500 * 11 10 9 35 35 H 1.08000 * 125.87433 * 180.17986 * 14 13 12 36 36 H 1.08994 * 109.46693 * 19.97092 * 16 15 14 37 37 H 1.09000 * 109.47153 * 139.97562 * 16 15 14 38 38 H 0.96997 * 120.00613 * 359.97438 * 17 16 15 39 39 H 1.09000 * 109.60334 * 290.81934 * 22 20 18 40 40 H 1.08998 * 109.60312 * 51.31443 * 22 20 18 41 41 H 1.08994 * 109.67975 * 52.20423 * 23 22 20 42 42 H 1.09006 * 109.66956 * 172.73913 * 23 22 20 43 43 H 1.09004 * 109.39818 * 169.03063 * 24 23 22 44 44 H 1.08997 * 109.40676 * 288.77530 * 24 23 22 45 45 H 0.97011 * 117.94745 * 182.22528 * 27 25 24 46 46 H 1.08999 * 109.89318 * 103.53969 * 29 9 7 47 47 H 1.09003 * 109.96554 * 342.31323 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.5320 2.0266 -1.3995 5 1 1.4308 2.6623 0.6653 6 1 3.5301 1.4504 0.7341 7 6 2.0103 -1.2021 -0.0005 8 1 1.5198 -2.1090 0.3211 9 7 3.3169 -1.2381 -0.4086 10 6 4.2278 -2.2945 0.0581 11 6 4.6825 -3.1355 -1.1398 12 7 5.0699 -2.2439 -2.2366 13 7 5.8609 -2.5582 -3.3448 14 6 5.9607 -1.4871 -4.0927 15 6 5.2376 -0.4556 -3.4804 16 6 5.0822 0.9505 -4.0001 17 7 6.0107 1.8372 -3.2946 18 6 6.0490 3.1502 -3.5960 19 8 5.3151 3.5976 -4.4517 20 6 7.0037 4.0626 -2.8699 21 1 7.0380 3.7835 -1.8168 22 6 8.4000 3.9191 -3.4766 23 6 9.3061 5.0060 -2.8857 24 6 8.8207 6.3674 -3.3898 25 6 7.3361 6.4845 -3.1955 26 8 6.8379 7.5897 -3.2328 27 7 6.5366 5.4385 -2.9845 28 6 4.7056 -0.9453 -2.3445 29 6 3.8532 -0.2195 -1.3307 30 1 -0.4850 0.8400 0.0004 31 1 3.7095 -2.9318 0.7745 32 1 5.0965 -1.8415 0.5356 33 1 5.5358 -3.7492 -0.8509 34 1 3.8647 -3.7789 -1.4643 35 1 6.5062 -1.4125 -5.0218 36 1 5.3018 0.9695 -5.0675 37 1 4.0594 1.2885 -3.8334 38 1 6.5979 1.4794 -2.6105 39 1 8.8040 2.9357 -3.2362 40 1 8.3428 4.0392 -4.5585 41 1 9.2521 4.9772 -1.7974 42 1 10.3346 4.8411 -3.2071 43 1 9.3223 7.1593 -2.8336 44 1 9.0560 6.4660 -4.4495 45 1 5.5842 5.6035 -2.9022 46 1 4.4612 0.4972 -0.7786 47 1 3.0345 0.2953 -1.8335 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069864357.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:12 Heat of formation + Delta-G solvation = 33.648477 kcal Electronic energy + Delta-G solvation = -31128.917155 eV Core-core repulsion = 26927.989140 eV Total energy + Delta-G solvation = -4200.928016 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.35399 -40.89947 -39.29136 -36.74079 -36.53019 -35.16921 -33.32220 -33.15329 -31.87947 -30.71811 -30.40640 -29.11598 -26.53717 -25.73729 -24.77222 -23.74936 -23.16367 -21.91564 -20.82647 -20.31081 -19.49045 -19.00245 -18.02246 -17.29933 -16.94261 -16.65959 -16.30815 -15.80740 -15.54225 -15.33197 -15.15432 -14.92972 -14.44866 -14.30998 -14.21149 -14.09606 -14.07651 -13.66273 -13.58029 -13.15969 -12.97583 -12.76545 -12.41124 -12.29855 -12.07039 -11.87590 -11.73634 -11.54164 -11.50984 -11.45931 -10.88851 -10.62656 -10.53920 -10.41856 -10.34207 -9.93924 -9.77089 -9.32798 -9.13554 -8.97606 -8.93760 -8.27496 -7.42957 -6.18674 -3.60384 2.07148 2.34271 2.36607 2.62115 2.71924 2.99398 3.13180 3.25233 3.33523 3.38691 4.16456 4.21823 4.27790 4.28168 4.36037 4.47182 4.64123 4.68807 4.79229 4.87271 4.99152 5.13084 5.19255 5.25098 5.28675 5.30652 5.36483 5.39126 5.41030 5.46371 5.52632 5.67970 5.80858 5.86423 5.92188 6.06241 6.11116 6.25606 6.31855 6.33231 6.50123 6.79504 7.05668 7.22457 7.37104 7.52723 7.94011 7.96009 8.04705 8.05085 8.57326 9.40886 9.69926 10.96265 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011139 B = 0.003460 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.128492 B = 8089.677053 C = 9727.719769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.032 3.968 3 Si 0.874 3.126 4 H -0.281 1.281 5 H -0.296 1.296 6 H -0.271 1.271 7 C -0.275 4.275 8 H 0.094 0.906 9 N -0.605 5.605 10 C 0.132 3.868 11 C 0.112 3.888 12 N -0.352 5.352 13 N -0.307 5.307 14 C 0.060 3.940 15 C -0.283 4.283 16 C 0.205 3.795 17 N -0.716 5.716 18 C 0.499 3.501 19 O -0.529 6.529 20 C 0.123 3.877 21 H 0.100 0.900 22 C -0.127 4.127 23 C -0.122 4.122 24 C -0.137 4.137 25 C 0.523 3.477 26 O -0.555 6.555 27 N -0.700 5.700 28 C 0.122 3.878 29 C 0.176 3.824 30 H 0.267 0.733 31 H 0.095 0.905 32 H 0.041 0.959 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.179 0.821 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.401 0.599 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.102 0.898 44 H 0.102 0.898 45 H 0.406 0.594 46 H 0.055 0.945 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.530 2.531 -4.480 21.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.169 4.169 3 Si 0.703 3.297 4 H -0.208 1.208 5 H -0.224 1.224 6 H -0.196 1.196 7 C -0.402 4.402 8 H 0.111 0.889 9 N -0.329 5.329 10 C 0.004 3.996 11 C -0.011 4.011 12 N -0.133 5.133 13 N -0.127 5.127 14 C -0.127 4.127 15 C -0.296 4.296 16 C 0.082 3.918 17 N -0.368 5.368 18 C 0.282 3.718 19 O -0.405 6.405 20 C 0.014 3.986 21 H 0.117 0.883 22 C -0.165 4.165 23 C -0.160 4.160 24 C -0.176 4.176 25 C 0.311 3.689 26 O -0.434 6.434 27 N -0.353 5.353 28 C -0.010 4.010 29 C 0.049 3.951 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.196 0.804 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.236 0.764 39 H 0.112 0.888 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.102 0.898 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.243 0.757 46 H 0.072 0.928 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 20.050 2.099 -4.853 20.735 hybrid contribution -0.027 1.337 0.201 1.352 sum 20.023 3.436 -4.651 20.841 Atomic orbital electron populations 1.69798 1.05642 1.27067 1.51255 1.25213 0.95255 0.97554 0.98881 0.87156 0.79855 0.84865 0.77802 1.20803 1.22359 1.19618 1.18863 0.83941 0.95331 1.42055 0.88874 1.44487 1.09041 1.28919 1.50419 1.21333 0.94103 0.91457 0.92691 1.22584 1.00281 0.92705 0.85576 1.48533 1.37950 1.08442 1.18324 1.77241 1.14747 1.23504 0.97223 1.23701 0.99289 0.90218 0.99505 1.19413 1.12997 0.97426 0.99717 1.19407 0.93197 0.83736 0.95488 1.46229 1.41483 1.07573 1.41494 1.20708 0.84163 0.83034 0.83846 1.90760 1.42014 1.75374 1.32312 1.20928 0.94465 0.82424 1.00783 0.88274 1.21867 0.91752 1.01086 1.01793 1.21673 0.99854 0.92960 1.01472 1.21685 0.91733 0.99671 1.04558 1.20150 0.89880 0.83637 0.75277 1.90779 1.76143 1.25173 1.51277 1.45253 1.11924 1.05237 1.72855 1.21838 0.96055 0.86120 0.96990 1.20536 0.95138 0.91224 0.88208 0.92239 0.88694 0.94131 0.89600 0.89930 0.80374 0.90564 0.90800 0.76425 0.88821 0.89988 0.90600 0.89782 0.87920 0.88018 0.75674 0.92804 0.88128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.01 13.97 55.49 0.78 -25.23 16 2 C 0.03 0.85 5.26 -17.43 -0.09 0.76 16 3 Si 0.87 20.50 24.15 -169.99 -4.11 16.40 16 4 H -0.28 -6.38 6.47 56.52 0.37 -6.01 16 5 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.27 -6.05 6.61 56.52 0.37 -5.68 16 7 C -0.27 -7.01 10.10 -15.06 -0.15 -7.16 16 8 H 0.09 2.52 8.06 -52.48 -0.42 2.10 16 9 N -0.61 -12.85 2.81 -172.97 -0.49 -13.33 16 10 C 0.13 2.16 6.49 -3.59 -0.02 2.14 16 11 C 0.11 1.67 7.45 -3.87 -0.03 1.64 16 12 N -0.35 -5.93 4.03 -56.93 -0.23 -6.16 16 13 N -0.31 -4.95 12.61 30.70 0.39 -4.56 16 14 C 0.06 0.82 11.97 -17.21 -0.21 0.61 16 15 C -0.28 -4.16 5.46 -105.21 -0.57 -4.73 16 16 C 0.21 2.76 5.95 -5.19 -0.03 2.73 16 17 N -0.72 -8.04 5.55 -61.47 -0.34 -8.38 16 18 C 0.50 6.04 6.98 -10.99 -0.08 5.97 16 19 O -0.53 -8.63 16.40 5.55 0.09 -8.54 16 20 C 0.12 1.10 3.45 -69.52 -0.24 0.86 16 21 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 22 C -0.13 -0.77 5.29 -26.59 -0.14 -0.91 16 23 C -0.12 -0.61 6.03 -26.52 -0.16 -0.77 16 24 C -0.14 -0.99 6.03 -28.10 -0.17 -1.16 16 25 C 0.52 6.21 7.71 -11.87 -0.09 6.12 16 26 O -0.56 -9.05 17.78 5.55 0.10 -8.95 16 27 N -0.70 -7.96 4.79 -55.99 -0.27 -8.22 16 28 C 0.12 2.11 6.71 -82.17 -0.55 1.56 16 29 C 0.18 3.46 4.24 -4.49 -0.02 3.44 16 30 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.09 1.45 7.94 -51.93 -0.41 1.04 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.18 1.80 8.06 -52.49 -0.42 1.38 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.40 3.64 8.46 -40.82 -0.35 3.30 16 39 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 41 H 0.08 0.35 8.13 -51.93 -0.42 -0.07 16 42 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.41 5.24 8.46 -40.81 -0.35 4.89 16 46 H 0.05 1.03 6.41 -51.93 -0.33 0.69 16 47 H 0.10 2.22 5.12 -51.93 -0.27 1.96 16 LS Contribution 379.88 15.07 5.72 5.72 Total: -1.00 -34.94 379.88 -7.73 -42.67 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -6.82 Total: 7.49 kcal Atomic # 6 Polarization: 13.66 SS G_CDS: -2.56 Total: 11.10 kcal Atomic # 7 Polarization: -65.73 SS G_CDS: -0.16 Total: -65.89 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: 0.19 Total: -17.49 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.11 Total: 16.40 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.94 -7.73 -42.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069864357.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.316 kcal (2) G-P(sol) polarization free energy of solvation -34.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds